jgi.p|Nanoce1779_2|595776, mRNA_7148 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595776
Unique NamemRNA_7148
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1325
Alignment locationscaffold_16:400691..402180 -

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Properties
Property NameValue
TranscriptId595862
TrackFilteredModels2
ProteinId595776
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:400691..402180 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595776gene_7148Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595776mRNA_7148-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7148CDS_7148Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7148 ID=mRNA_7148|Name=jgi.p|Nanoce1779_2|595776|organism=Nannochloropsis oceanica|type=mRNA|length=1325bp
GCTGGTCGAGCGATTGGAGGAATCGAATCGGGCGACACGTACGCAGGTGC
AAGCTATGGAAGCAGCGTTGGGCTGTAAGGTGGACAAGGTGGAGATGGCG
GGGATGGAGGCGACGTTGAATCGTATCAAGATATATAATAGTCGAATGGA
GGGGTTGGAGCAGGGCCAAGCCCAGGACATGGCGCGTGTTCGGGCGGAGG
TACAACTGCTGCAGGAACGACGCATTGCGGCGGATCAGCAGTTGGAGGTG
ACGAGGAAGGCGCTGGGAGCTCTGGAGGAAAAGCATGGGGCGTGGAAGCG
GGAGACATTGGAATTGATGAAAGAGGTTGGTGATGGATAGTGGAGGGGAA
TGCGGAGGAGTAGAAGGAGGGGAGAAGAAAATGGAAAAGGAAGAGGAGGA
ATAGGAACCGGACGACGATAAAATGGACCACGATGAGGAGGAGGAGATAG
ATGGGTGGAAAGGCCAGCCTGACATCGAGGAAGGTCCAGGCGGAAAGACG
GAAATTCTTGTACTCCTCACTGAAGACTCACCCTCGTTCACTCCCTCCTT
CCTCCATCTTTTCTCCCTCCTCTAGGTTGATGGAGAGCTGGCACAGATGG
CATCATTATCTCAACTGGAAGGCAAGCTTGATGCAAGAGTGTGGGAGAGG
GAGTGGAGGTTGGCTTGTGAGCGATTAGATTCAAAGGTAGATCTGCCAGA
GATGGCGGCAATGGCGGAACGTGTGGGGGGGGTTGAGGAGGACGTGGTGC
GATTGGGGAGGGAGAGCGATCAGTACTCGCGGTTTGTGGCCTGGTTCTAT
TCGAGAGGGGAGGCGTATGAGCATAATTTGAATGCGCTCGATAGAACGAT
CGGGAGGTTGGCTAAGGAGTCGTTGGGGAAGTACCTAGAAGGGAGGTGGG
GAGGTCGAGAGCGCGAGAGAATTCAGGAGCCGGAAGTAGACGAGGCGGAG
AGGGAGGAAGAAAGCGATTTAGCATTCTCGTCGTCGTCATCGGAGCGGTC
GTCCTCACCGGGGTTTGGGGGGAGGAGAGGAGGAGGGCGGCTTGAAGGGG
GGAAGGAGAGGGAGGAGACACGCACGCTTTCGCCGGTAGCGTAGGAGATG
ATTGCAGCAGAGACGCTGCTCACATCACCTGATCTATTTCAACCATTCAT
GTTCTTGTCCTCCTTCTCCCCGACTGCTGGACAGGATGTCAGAGTGCATC
GTTGACATGCTTTATTTTCCTGCCTCCTCCTGCCTCCTCAGTCACCCGAC
ATGCTCCTGCCTCTACTCTCCCATTCGCCATCGACTGCTGCCGCCTTCAT
AGACAGGACAGACAGCGGGTTTCCT
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protein sequence of jgi.p|Nanoce1779_2|595776

>mRNA_7148-protein ID=mRNA_7148-protein|Name=jgi.p|Nanoce1779_2|595776|organism=Nannochloropsis oceanica|type=polypeptide|length=164bp
MASLSQLEGKLDARVWEREWRLACERLDSKVDLPEMAAMAERVGGVEEDV
VRLGRESDQYSRFVAWFYSRGEAYEHNLNALDRTIGRLAKESLGKYLEGR
WGGRERERIQEPEVDEAEREEESDLAFSSSSSERSSSPGFGGRRGGGRLE
GGKEREETRTLSPV
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mRNA from alignment at scaffold_16:400691..402180-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7148 ID=mRNA_7148|Name=jgi.p|Nanoce1779_2|595776|organism=Nannochloropsis oceanica|type=mRNA|length=1490bp|location=Sequence derived from alignment at scaffold_16:400691..402180- (Nannochloropsis oceanica)
GCTGGTCGAGCGATTGGAGGAATCGAATCGGGCGACACGTACGCAGGTGC
AAGCTATGGAAGCAGCGTTGGGCTGTAAGGTGGACAAGGTGGAGATGGCG
GGGATGGAGGCGACGTTGAATCGTATCAAGATATATAATAGTCGAATGGA
GGGGTTGGAGCAGGGCCAAGCCCAGGACATGGCGCGTGTTCGGGCGGAGG
TACAACTGCTGCAGGAACGACGCATTGCGGCGGATCAGCAGTTGGAGGTG
ACGAGGAAGGCGCTGGGAGCTCTGGAGGAAAAGCATGGGGCGTGGAAGCG
GGAGACATTGGAATTGATGAAAGAGGTTGGTGATGGATAGTGGAGGGGAA
TGCGGAGGAGTAGAAGGAGGGGAGAAGAAAATGGAAAAGGAAGAGGAGGA
ATAGGAACCGGACGACGATAAAATGGACCACGATGAGGAGGAGGAGATAG
ATGGGTGGAAAGGCCAGCCTGACATCGAGGAAGGTCCAGGCGGAAAGACG
GAAATTCTTGTACTCCTCACTGAAGACTCACCCTCGTTCACTCCCTCCTT
CCTCCATCTTTTCTCCCTCCTCTAGGTTGATGGAGAGCTGGCACAGATGG
CATCATTATCTCAACTGGAAGGCAAGCTTGATGCAAGAGTGTGGGAGAGG
GAGTGGAGGTTGGCTTGTGAGCGATTAGATTCAAAGGTAGATCTGCCAGA
GATGGCGGCAATGGCGGAACGTGTGGGGGGGGTTGAGGAGGACGTGGTGC
GATTGGGGAGGGAGAGCGATCAGTACTCGCGGTTTGTGGCCTGGTTCTAT
TCGAGAGGGGAGGCGTATGAGCATAATTTGAATGCGCTCGATAGAACGAT
CGGGAGGTTGGCTAAGGAGTCGTTGGGGAAGTACCTAGAAGGGAGGTGGG
GAGGTCGAGAGCGCGAGAGAATTCAGGAGCCGGAAGTAGACGAGGCGGAG
AGGGAGGAAGAAAGCGATTTAGCATTCTCGTCGTCGTCATCGGAGCGGTC
GTCCTCACCGGGGTTTGGGGGGAGGAGAGGAGGAGGGCGGCTTGAAGGGG
GGAAGGAGAGGGAGGAGACACGCACGCTTTCGCCGGTAGCGTAGGAGATG
ATTGCAGCAGAGACGCTGTGAGTATGGAGGAATAAATGGCTTTAATACGT
AAAAATACATAGATGGGCACAGGAACTTATAACGTAATCCCTCCCGAAAG
TAAAACAATTGATGCAATATCGACTCACCAACCACCTTGAGGCTTCTAGT
CTACCATTTCACGCTTCTTTCTGTACCCACCTGCTCACATCACCTGATCT
ATTTCAACCATTCATGTTCTTGTCCTCCTTCTCCCCGACTGCTGGACAGG
ATGTCAGAGTGCATCGTTGACATGCTTTATTTTCCTGCCTCCTCCTGCCT
CCTCAGTCACCCGACATGCTCCTGCCTCTACTCTCCCATTCGCCATCGAC
TGCTGCCGCCTTCATAGACAGGACAGACAGCGGGTTTCCT
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Coding sequence (CDS) from alignment at scaffold_16:400691..402180-

>mRNA_7148 ID=mRNA_7148|Name=jgi.p|Nanoce1779_2|595776|organism=Nannochloropsis oceanica|type=CDS|length=493bp|location=Sequence derived from alignment at scaffold_16:400691..402180- (Nannochloropsis oceanica)
ATGGCATCATTATCTCAACTGGAAGGCAAGCTTGATGCAAGAGTGTGGGA
GAGGGAGTGGAGGTTGGCTTGTGAGCGATTAGATTCAAAGGTAGATCTGC
CAGAGATGGCGGCAATGGCGGAACGTGTGGGGGGGGTTGAGGAGGACGTG
GTGCGATTGGGGAGGGAGAGCGATCAGTACTCGCGGTTTGTGGCCTGGTT
CTATTCGAGAGGGGAGGCGTATGAGCATAATTTGAATGCGCTCGATAGAA
CGATCGGGAGGTTGGCTAAGGAGTCGTTGGGGAAGTACCTAGAAGGGAGG
TGGGGAGGTCGAGAGCGCGAGAGAATTCAGGAGCCGGAAGTAGACGAGGC
GGAGAGGGAGGAAGAAAGCGATTTAGCATTCTCGTCGTCGTCATCGGAGC
GGTCGTCCTCACCGGGGTTTGGGGGGAGGAGAGGAGGAGGGCGGCTTGAA
GGGGGGAAGGAGAGGGAGGAGACACGCACGCTTTCGCCGGTAG
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Synonyms
Publications