jgi.p|Nanoce1779_2|596595, mRNA_6865 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596595
Unique NamemRNA_6865
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length527
Alignment locationscaffold_17:293700..294622 +

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Properties
Property NameValue
TranscriptId596681
TrackFilteredModels2
ProteinId596595
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:293700..294622 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596595gene_6865Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596595mRNA_6865-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6865CDS_6865Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6865 ID=mRNA_6865|Name=jgi.p|Nanoce1779_2|596595|organism=Nannochloropsis oceanica|type=mRNA|length=527bp
CAGCACCCGTCCAAAACAATGGCCGGATGTCGTGCCTACACCGAACTGGA
AGCGGAAAAGCTAACTTGTGAAATTGTGGAGCTCGAGAACTCAGTCATGC
ATTTGAAACGCTCCAATCAAGAACTCACCGACGCCCTAGCCTCCTCCCCA
GAAGATACCGACTTCCAAGAGGCCATCAAAGAAAATACGGGTGTTATCCA
GAGAAAGGAAAATCTCCTCGAAGAGCTGAAGAAGGAACTATGTACCCACA
AAAGCATGCTCGTCACGGCCTTGGGCGCAGCAGAAGCCCGGCAGCTCCCT
GCGGCGATAGCGATTGAAAACGAGGCGGCAGCATCAGGTAGGCAAGCAGC
TTCAATAGCGACAGAGGCAGCACGTGCAGCGCAAGCAAGAGCAGCGCCCA
ACCAAGCTACGCCGGACCAGCAGCAGCCCGAGGAAGAGGGAAAGGAAGGT
GGGGTTTACCTTTGAGGACCATGTTAAAAAACGAAAAGCGAATACAAAGA
AACCAAGTGAGAAGATGTCAAACAGTA
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protein sequence of jgi.p|Nanoce1779_2|596595

>mRNA_6865-protein ID=mRNA_6865-protein|Name=jgi.p|Nanoce1779_2|596595|organism=Nannochloropsis oceanica|type=polypeptide|length=149bp
MAGCRAYTELEAEKLTCEIVELENSVMHLKRSNQELTDALASSPEDTDFQ
EAIKENTGVIQRKENLLEELKKELCTHKSMLVTALGAAEARQLPAAIAIE
NEAAASGRQAASIATEAARAAQARAAPNQATPDQQQPEEEGKEGGVYL*
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mRNA from alignment at scaffold_17:293700..294622+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6865 ID=mRNA_6865|Name=jgi.p|Nanoce1779_2|596595|organism=Nannochloropsis oceanica|type=mRNA|length=923bp|location=Sequence derived from alignment at scaffold_17:293700..294622+ (Nannochloropsis oceanica)
CAGCACCCGTCCAAAACAATGGCCGGATGTCGTGCCTACACCGAACTGGA
AGCGGAAAAGCTAACTTGTGAAATTGTGGAGCTCGAGAACTCAGTCATGC
ATTTGGTAAGTTTGCGATGGTGTCCTGGGGTACTACGAGTGAGGGCGGTT
TGGGGGGAAGGAGAAATTGTTCTTTCCTAACTATTTGCCTTGCGTGGCAA
TCTATCCAAGACATGGACGCTCTCTAAATCGATCACGGAAGTTACTCGCG
GCAAAATGTTGATATCCGCGGACTGCCGTGCATGTCTGTATCGTCTGTCT
CATGTCTCCTCTTGTGCGGCGGCCAGCATGTCGTTTGCGCCACCCTCGAA
GGGCGGTTTCGTACCTTACCTCACGCTGCGACACTGCCTATATTTGCCCC
CACTTCTACCGTTTGTATATACCCATTATCGCTACCTATATGTACACTCC
CTCTCCGTACGAGTCAATGTTCATCTTCTTCCCCACTACAAAAACAAACA
GAAACGCTCCAATCAAGAACTCACCGACGCCCTAGCCTCCTCCCCAGAAG
ATACCGACTTCCAAGAGGCCATCAAAGAAAATACGGGTGTTATCCAGAGA
AAGGAAAATCTCCTCGAAGAGCTGAAGAAGGAACTATGTACCCACAAAAG
CATGCTCGTCACGGCCTTGGGCGCAGCAGAAGCCCGGCAGCTCCCTGCGG
CGATAGCGATTGAAAACGAGGCGGCAGCATCAGGTAGGCAAGCAGCTTCA
ATAGCGACAGAGGCAGCACGTGCAGCGCAAGCAAGAGCAGCGCCCAACCA
AGCTACGCCGGACCAGCAGCAGCCCGAGGAAGAGGGAAAGGAAGGTGGGG
TTTACCTTTGAGGACCATGTTAAAAAACGAAAAGCGAATACAAAGAAACC
AAGTGAGAAGATGTCAAACAGTA
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Coding sequence (CDS) from alignment at scaffold_17:293700..294622+

>mRNA_6865 ID=mRNA_6865|Name=jgi.p|Nanoce1779_2|596595|organism=Nannochloropsis oceanica|type=CDS|length=894bp|location=Sequence derived from alignment at scaffold_17:293700..294622+ (Nannochloropsis oceanica)
ATGGCCGGATGTCGTGCCTACACCGAACTGGAAGCGGAAAAGCTAACTTG
TGAAATTGTGGAGCTCGAGAACTCAGTCATGCATTTGAAACGCTCCAATC
AAGAACTCACCGACGCCCTAGCCTCCTCCCCAGAAGATACCGACTTCCAA
GAGGCCATCAAAGAAAATACGGGTGTTATCCAGAGAAAGGAAAATCTCCT
CGAAGAGCTGAAGAAGGAACTATGTACCCACAAAAGCATGCTCGTCACGG
CCTTGGGCGCAGCAGAAGCCCGGCAGCTCCCTGCGGCGATAGCGATTGAA
AACGAGGCGGCAGCATCAGGTAGGCAAGCAGCTTCAATAGCGACAGAGGC
AGCACGTGCAGCGCAAGCAAGAGCAGCGCCCAACCAAGCTACGCCGGACC
AGCAGCAGCCCGAGGAAGAGGGAAAGGAAGGTGGGGTTTACCTTTGAATG
GCCGGATGTCGTGCCTACACCGAACTGGAAGCGGAAAAGCTAACTTGTGA
AATTGTGGAGCTCGAGAACTCAGTCATGCATTTGAAACGCTCCAATCAAG
AACTCACCGACGCCCTAGCCTCCTCCCCAGAAGATACCGACTTCCAAGAG
GCCATCAAAGAAAATACGGGTGTTATCCAGAGAAAGGAAAATCTCCTCGA
AGAGCTGAAGAAGGAACTATGTACCCACAAAAGCATGCTCGTCACGGCCT
TGGGCGCAGCAGAAGCCCGGCAGCTCCCTGCGGCGATAGCGATTGAAAAC
GAGGCGGCAGCATCAGGTAGGCAAGCAGCTTCAATAGCGACAGAGGCAGC
ACGTGCAGCGCAAGCAAGAGCAGCGCCCAACCAAGCTACGCCGGACCAGC
AGCAGCCCGAGGAAGAGGGAAAGGAAGGTGGGGTTTACCTTTGA
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Synonyms
Publications