jgi.p|Nanoce1779_2|574448, mRNA_868 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|574448
Unique NamemRNA_868
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1722
Alignment locationscaffold_2:623224..625434 +

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Properties
Property NameValue
TranscriptId574534
TrackFilteredModels2
ProteinId574448
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:623224..625434 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574448gene_868Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574448mRNA_868-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_868CDS_868Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_868 ID=mRNA_868|Name=jgi.p|Nanoce1779_2|574448|organism=Nannochloropsis oceanica|type=mRNA|length=1722bp
ACGACAGTGAGAACTTGCCCCCCACACACATCACGCTAAAAAAATAGCAT
GGCAACGTTTTGGAGCCGATTGTGGGACAAGACGAAGAAGGACCCCCTGA
TTCCCATTGGTTGCACCGCGACGCTGGGTTGCCTCAGTGCGGGTCTGTAC
GCCTTCAAGAGCGGAGAGAAACATTTATCACAAAAAATGATGCGGGCCCG
CGTGGTGGCACAAGGCTTCACAGTCGCGGTCCTCATGGCAGGCGCTTTCT
ACAATTCGAATATAAAGGCAATCCAGGAGCCTGCTCGTGGCAGGAGTCCA
TCTTAAGCGCCTTCTTGAGGCGAAAGGCAGCAGCAATTAAGGAAGATAAG
TTTGAAAACGTAGTTTTTGTGCTATGTAAGGGAGAGAGCGCAATGGCTGT
ACAGGTTGAAGAGAGGATGGACGGGGAGTTCGACGTGTCTGGCAAAGTGC
CTTGGGACATCAAATTTATGTGGAAATATTCGGGCACGTTTAAAGAAGCA
AGCAAACTAACATAAGAACGAGGCTCGTTATTTGTGAGCATCTCTCCAGA
GAAAAAGCACTCTCGGATCGGCCACGTTTTGAGGGTCGATGCGCAAGTGG
ATTGACGATGATGCTGCTCCGTGCTCCCTCCGAAATGCCACCGGGCCTCC
GAAATGCCACCAGGCCTCTTTTGGAATCCTTGCTAACTGTCTTTTCTACA
GTCCGGTACGTCTCCGGGCGTTTTAAAGGCGTGTCCTGAAATGTCACAAT
AAGTAAGGCCTTAGGCCCATCCTCTCGCCAAGGCCTCTCGACCACATTGC
TTCTTTCTTTCTCACGCCTCACATCTCCCCATGCATCCTACACAAACACC
AACACACATGCGCCACCGTCACCACGATCACCACAGCTCTCACAAAGTAG
AGGATTATGAGCGACAATGGAGGGTTCAACCCCTTCGCTCCAAGGGTAAG
GACATTAGCTTTTCCCTCTTCTCTCTTCCTGTGAGGCCCCATTTCCAAAG
CCCAGTCAAAATATGCTTCCTTCATTCCTACATCCATGCTGAATCACCAC
AACCAAATCACAAGATAGTAGAGCTGATGATGGGACTCGTGCCAGCAGCG
GCAAGTTCCCATCCCCGTGCCTCTTACCCGTTTCCCCATTCTTACACAAT
TACTCTTTTCCCATTTTCTGTCAGAGCGGAGCTGGCGGCGGTCCTGGAAC
TGTGACAGGTAGCAAGTCTACATCCCCGTCCACTGTCCACGAGCCATCCT
GGCTCAAGGGTGCGTCAATCTCATCGAACCCGGTCGCGACTGCGCAATCC
GCATCGCATGTGCCGATTCAACCAGCCACGCTTCAGCCTCAAGCCGCCGC
TGCCGCTCCCGCTCAACAACAGCCGAGCGGCCAGACACCACAGCTTGTTG
TGTATATGCGGGTAGCGAATTTCGGGCTTTGCATTCTGATGTCGGCAGCT
GCTATTCTGACTGTGATTGTACCTGCCGGTGCCACGCCTGCCTCGTGGGT
GTTGGCGTTCTATGTGCTGTGAGTAGACGGAGAGTGCGGGCCGCGCTGTC
TGATATTTTGCTCCTTTTGTTTCCATCGGGTTTATGTAGCGTCTCTGATG
GCTTGTCTCACATAGATATTGTCCATTTCTTGTAGTCCATCATTTATCAT
TTCCCCACGACACTGCTGCTTCTATGAGCGCTCTCCTTAATCTTTCCTCT
GCCCTTCCTTCCCTCCCTCCCT
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protein sequence of jgi.p|Nanoce1779_2|574448

>mRNA_868-protein ID=mRNA_868-protein|Name=jgi.p|Nanoce1779_2|574448|organism=Nannochloropsis oceanica|type=polypeptide|length=86bp
MATFWSRLWDKTKKDPLIPIGCTATLGCLSAGLYAFKSGEKHLSQKMMRA
RVVAQGFTVAVLMAGAFYNSNIKAIQEPARGRSPS*
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mRNA from alignment at scaffold_2:623224..625434+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_868 ID=mRNA_868|Name=jgi.p|Nanoce1779_2|574448|organism=Nannochloropsis oceanica|type=mRNA|length=2211bp|location=Sequence derived from alignment at scaffold_2:623224..625434+ (Nannochloropsis oceanica)
ACGACAGTGAGAACTTGCCCCCCACACACATCACGCTAAAAAAATAGCAT
GGCAACGTTTTGGAGCCGATTGTGGGACAAGACGAAGAAGGACCCCCTGA
TTCCCATTGGTTGCACCGCGACGCTGGGTTGCCTCAGTGCGGGTCTGTAC
GCCTTCAAGAGCGGAGAGGTACGTGGGCGTCTGTGGACTGCGAAAGGGGA
CGGCGGGCCACACAAGTCAACCCTTCCCCCCCCCCCCCCTCCCGCTCCCC
CCAATCCGTGAATTCTGTTTACAATACTTTCTGATCAACCGGCATTCATG
CGTAAACACAGAAACATTTATCACAAAAAATGATGCGGGCCCGCGTGGTG
GCACAAGGCTTCACAGTCGCGGTCCTCATGGCAGGTAAGGAGACGCAGAA
AGACGGTAGATAGGGACGGAAGTTAATAATGCCCGCTTCCCGCGTGATGA
CTGGTGCTTTCCAATTCTAGGGTCGTCGAGGCCATTTCTTCGTAGTTCCT
CCCGTGGCTTATTTCCTCCACGCTATGCTGTACAGGCGCTTTCTACAATT
CGAATATAAAGGCAATCCAGGAGCCTGCTCGTGGCAGGTAGGGCTGTTTT
CATTCAAAAGAGGAAGACAGGGAGGTCAGATGGAGGGATGCCGGCTGCCA
GGATGCAGTTAGAGGGTTCCTTTATTTGTGTGTAATAATGTGAAAAAATC
CCCCTCTTCTAAACTGACGTTTCCGCTCCTTACCCTGGTAATCAATTCAC
ATGAACTCTCCGCTCTTCCCTCTTTTACACAGGAGTCCATCTTAAGCGCC
TTCTTGAGGCGAAAGGCAGCAGCAATTAAGGAAGATAAGTTTGAAAACGT
AGTTTTTGTGCTATGTAAGGGAGAGAGCGCAATGGCTGTACAGGTTGAAG
AGAGGATGGACGGGGAGTTCGACGTGTCTGGCAAAGTGCCTTGGGACATC
AAATTTATGTGGAAATATTCGGGCACGTTTAAAGAAGCAAGCAAACTAAC
ATAAGAACGAGGCTCGTTATTTGTGAGCATCTCTCCAGAGAAAAAGCACT
CTCGGATCGGCCACGTTTTGAGGGTCGATGCGCAAGTGGATTGACGATGA
TGCTGCTCCGTGCTCCCTCCGAAATGCCACCGGGCCTCCGAAATGCCACC
AGGCCTCTTTTGGAATCCTTGCTAACTGTCTTTTCTACAGTCCGGTACGT
CTCCGGGCGTTTTAAAGGCGTGTCCTGAAATGTCACAATAAGTAAGGCCT
TAGGCCCATCCTCTCGCCAAGGCCTCTCGACCACATTGCTTCTTTCTTTC
TCACGCCTCACATCTCCCCATGCATCCTACACAAACACCAACACACATGC
GCCACCGTCACCACGATCACCACAGCTCTCACAAAGTAGAGGATTATGAG
CGACAATGGAGGGTTCAACCCCTTCGCTCCAAGGGTAAGGACATTAGCTT
TTCCCTCTTCTCTCTTCCTGTGAGGCCCCATTTCCAAAGCCCAGTCAAAA
TATGCTTCCTTCATTCCTACATCCATGCTGAATCACCACAACCAAATCAC
AAGATAGTAGAGCTGATGATGGGACTCGTGCCAGCAGCGGCAAGTTCCCA
TCCCCGTGCCTCTTACCCGTTTCCCCATTCTTACACAATTACTCTTTTCC
CATTTTCTGTCAGAGCGGAGCTGGCGGCGGTCCTGGAACTGTGACAGGTA
GCAAGTCTACATCCCCGTCCACTGTCCACGAGCCATCCTGGCTCAAGGGT
GCGTCAATCTCATCGAACCCGGTCGCGACTGCGCAATCCGCATCGCATGT
GCCGATTCAACCAGCCACGCTTCAGCCTCAAGCCGCCGCTGCCGCTCCCG
CTCAACAACAGCCGAGCGGCCAGACACCACAGCTTGTTGTGTATATGCGG
GTAGCGAATTTCGGGCTTTGCATTCTGATGTCGGCAGCTGCTATTCTGAC
TGTGATTGTACCTGCCGGTGCCACGCCTGCCTCGTGGGTGTTGGCGTTCT
ATGTGCTGTGAGTAGACGGAGAGTGCGGGCCGCGCTGTCTGATATTTTGC
TCCTTTTGTTTCCATCGGGTTTATGTAGCGTCTCTGATGGCTTGTCTCAC
ATAGATATTGTCCATTTCTTGTAGTCCATCATTTATCATTTCCCCACGAC
ACTGCTGCTTCTATGAGCGCTCTCCTTAATCTTTCCTCTGCCCTTCCTTC
CCTCCCTCCCT
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Coding sequence (CDS) from alignment at scaffold_2:623224..625434+

>mRNA_868 ID=mRNA_868|Name=jgi.p|Nanoce1779_2|574448|organism=Nannochloropsis oceanica|type=CDS|length=1032bp|location=Sequence derived from alignment at scaffold_2:623224..625434+ (Nannochloropsis oceanica)
ATGGCAACGTTTTGGAGCCGATTGTGGGACAAGACGAAGAAGGACCCCCT
GATTCCCATTGGTTGCACCGCGACGCTGGGTTGCCTCAGTGCGGGTCTGT
ACGCCTTCAAGAGCGGAGAGAAACATTTATCACAAAAAATGATGCGGGCC
CGCGTGGTGGCACAAGGCTTCACAGTCGCGGTCCTCATGGCAGGCGCTTT
CTACAATTCGAATATAAAGGCAATCCAGGAGCCTGCTCGTGGCAGGAGTC
CATCTTAAATGGCAACGTTTTGGAGCCGATTGTGGGACAAGACGAAGAAG
GACCCCCTGATTCCCATTGGTTGCACCGCGACGCTGGGTTGCCTCAGTGC
GGGTCTGTACGCCTTCAAGAGCGGAGAGAAACATTTATCACAAAAAATGA
TGCGGGCCCGCGTGGTGGCACAAGGCTTCACAGTCGCGGTCCTCATGGCA
GGCGCTTTCTACAATTCGAATATAAAGGCAATCCAGGAGCCTGCTCGTGG
CAGGAGTCCATCTTAAATGGCAACGTTTTGGAGCCGATTGTGGGACAAGA
CGAAGAAGGACCCCCTGATTCCCATTGGTTGCACCGCGACGCTGGGTTGC
CTCAGTGCGGGTCTGTACGCCTTCAAGAGCGGAGAGAAACATTTATCACA
AAAAATGATGCGGGCCCGCGTGGTGGCACAAGGCTTCACAGTCGCGGTCC
TCATGGCAGGCGCTTTCTACAATTCGAATATAAAGGCAATCCAGGAGCCT
GCTCGTGGCAGGAGTCCATCTTAAATGGCAACGTTTTGGAGCCGATTGTG
GGACAAGACGAAGAAGGACCCCCTGATTCCCATTGGTTGCACCGCGACGC
TGGGTTGCCTCAGTGCGGGTCTGTACGCCTTCAAGAGCGGAGAGAAACAT
TTATCACAAAAAATGATGCGGGCCCGCGTGGTGGCACAAGGCTTCACAGT
CGCGGTCCTCATGGCAGGCGCTTTCTACAATTCGAATATAAAGGCAATCC
AGGAGCCTGCTCGTGGCAGGAGTCCATCTTAA
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Synonyms
Publications