jgi.p|Nanoce1779_2|600614, mRNA_7941 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|600614
Unique NamemRNA_7941
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length875
Alignment locationscaffold_22:227435..229180 -

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Properties
Property NameValue
TranscriptId600700
TrackFilteredModels2
ProteinId600614
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:227435..229180 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600614gene_7941Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|600614mRNA_7941-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7941CDS_7941Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7941 ID=mRNA_7941|Name=jgi.p|Nanoce1779_2|600614|organism=Nannochloropsis oceanica|type=mRNA|length=875bp
ACAGAAACAGGCAGCCAGGCGATTGCATCCAGCAATCACACAGAAGAAGA
CTTTCGAGCCGCCGGGCCCTCTTTTCGTTCTCAGTCATGTCCATCTTAGA
GTATAACGGCGGTGCATGTGTGGCCATGGTGGGCAAGAACTGCGTGGCGA
TTGCCAGTGACTTGCGTTATGGTGTGCAGGCACAAACGGTGTCATGCAAT
TTCCCCAAGGTGTACAAAATGAGCGACCGCCTGTTCGTGGGCCTGTCAGG
CCTTGCCACCGACATCCAGACCTTGGAGCAGCTGCTGCGCTTCCGGCTGA
ATATGTACAAGCTACGTGAGGAGCGGGACATCAAGCCCGAGACCTTCTCC
GCCCTCCTCTCCCACATTCTGTATGAAAAACGCTTTGGGCCCTACTTCGT
CGAGCCCCTTGTGGCGGGTCTCAAAACCGAGGATAACACGCCTTTCATCT
CAGGCATGGACCTGATAGGTGCCCCTGTCTTCGCCAAGGATTTCGTGGTG
GCGGGCACGTGCGCAGCCAATCTGTACGGGCTGTGCGAGTCCATGTGGAA
GCCGGATCTGGAGCCGGAGGAGCTGTTCGAGGTGCTGTCCCAGTCACTGC
TTGCCTCCGTAGACCGCGACGCGCTCAGTGGCTGGGGCGCAGTGGTGCAC
ATCATCACCCCTGAGGGAGTCACCTCGCGGACACTCAAGACCAGACAAGA
TTAGAGGGACGGAAAGAAAATGTCACAAGGGTGTACACACACTCTGGGAT
AGTGAGAAGCATGGGAAGGTTGAGGGTTAGGGGGAGGGGAGGGTAGTAGA
CCGAAAAGAATCAGACTAAGTGCCAGGCGGAAAACGCGGAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAA
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protein sequence of jgi.p|Nanoce1779_2|600614

>mRNA_7941-protein ID=mRNA_7941-protein|Name=jgi.p|Nanoce1779_2|600614|organism=Nannochloropsis oceanica|type=polypeptide|length=206bp
MSILEYNGGACVAMVGKNCVAIASDLRYGVQAQTVSCNFPKVYKMSDRLF
VGLSGLATDIQTLEQLLRFRLNMYKLREERDIKPETFSALLSHILYEKRF
GPYFVEPLVAGLKTEDNTPFISGMDLIGAPVFAKDFVVAGTCAANLYGLC
ESMWKPDLEPEELFEVLSQSLLASVDRDALSGWGAVVHIITPEGVTSRTL
KTRQD*
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mRNA from alignment at scaffold_22:227435..229180-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7941 ID=mRNA_7941|Name=jgi.p|Nanoce1779_2|600614|organism=Nannochloropsis oceanica|type=mRNA|length=1746bp|location=Sequence derived from alignment at scaffold_22:227435..229180- (Nannochloropsis oceanica)
ACAGAAACAGGCAGCCAGGCGATTGCATCCAGCAATCACACAGAAGAAGA
CTTTCGAGCCGCCGGGCCCTCTTTTCGTTCTCAGTCATGGTACGTACATG
TGTGCGCTCCAGCCCTCCCCCTAACCTCATATCTCCTCGCCAAATCGATT
CTCCATCGTCCGGCAAGGCTTGGGCGCGGCCAAAAAGGCCACCCCAAGCA
GTCACCCTGGACTCATCTCACCTGCACCCACATGCACACACAAACAGTCC
ATCTTAGAGTATAACGGCGGTGCATGTGTGGCCATGGTGGGCAAGAACTG
CGTGGCGATTGCCAGGTAAAGAGAGAGGGGGATGATAACGAGTACGGTAG
GTTTGGAAGTGTTGGCAGCAGAGGGTTATGAACGCACTGCTCGGTTATGC
TTCATAATTGTTATCGCAGCTAACAGTCGGGAGTTATTAATTGTGCCTGT
GAAAAAACATGTTCAATAAAGTAATCTCTCGGACAGCGGCGGCAAGTGTA
GAATTCGCTTCGCTTTCTAGCTCTTGAACTTCCACACTCATACGTGCCTT
TACTCTACCCCTTCCATCCCTCTCCACGCAGTGACTTGCGTTATGGTGTG
CAGGCACAAACGGTGTCATGCAATTTCCCCAAGGTATGCCTCGCTCCGTC
TTCTCTTTCGCCATGTCTACAATTTGTGTCAGTGTCTACATGCATGCTCC
ACTGCCCTCCCCGCAAGTTAAGGCCCCCAGTAAATTGCAGAGGCTTCCCT
TTCACTCAGCAATCGCTAGCTGCGGTTGCTGAACTCACCACCCGTATCTT
CTACTTTTCCTTCTCTTTCCTACTCCCATCCAGGTGTACAAAATGAGCGA
CCGCCTGTTCGTGGGCCTGTCAGGCCTTGCCACCGACATCCAGACCTTGG
AGCAGCTGCTGCGCTTCCGGCTGAATATGTACAAGCTACGTGAGGAGCGG
GACATCAAGCCCGAGACCTTCTCCGCCCTCCTCTCCCACATTCTGTATGA
AAAACGCTTTGGGCCCTACTTCGTCGAGCCCCTTGTGGCGGGTCTCAAAA
CCGAGGATAACACGCCTTTCATCTCAGGCATGGACCTGATAGGTGCCCCT
GTCTTCGCCAAGGATTTCGTGGTGGCGGGCACGTGCGCAGCCAATCTGTA
CGGGCTGTGCGAGTCCATGTGGAAGCCGGATCTGGAGCCGGAGGAGCTGT
TCGAGGTGCTGTCCCAGTCACTGCTTGCCTCCGTAGACCGCGACGCGCTC
AGTGGCTGGGGCGCAGTGGTGCACATCATGTATGTTTCTTTTGGCGGGGC
AGAGGACAAGAAGGAGTCAGGAGGGGGTTTGGATTCGAATTGGTGGGGGA
ATGAGGAAGAGTATGGAGGGGGATGAAAACGTTTCACTACTTTGGCCGTA
GAGTTTATCGGTTCCTGGCCCGCTTACATGTTGTCACATAACAAGTCTTA
CGCGCAGTGTTGATTGCATGCCGCTTGCCGTAACTTCACCCTTTCGCCCC
TCTTTCCCTCCCACCCCGAATCACAGCACCCCTGAGGGAGTCACCTCGCG
GACACTCAAGACCAGACAAGATTAGAGGGACGGAAAGAAAATGTCACAAG
GGTGTACACACACTCTGGGATAGTGAGAAGCATGGGAAGGTTGAGGGTTA
GGGGGAGGGGAGGGTAGTAGACCGAAAAGAATCAGACTAAGTGCCAGGCG
GAAAACGCGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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Coding sequence (CDS) from alignment at scaffold_22:227435..229180-

>mRNA_7941 ID=mRNA_7941|Name=jgi.p|Nanoce1779_2|600614|organism=Nannochloropsis oceanica|type=CDS|length=3090bp|location=Sequence derived from alignment at scaffold_22:227435..229180- (Nannochloropsis oceanica)
CACCCCTGAGGGAGTCACCTCGCGGACACTCAAGACCAGACAAGATTAGG
TGTACAAAATGAGCGACCGCCTGTTCGTGGGCCTGTCAGGCCTTGCCACC
GACATCCAGACCTTGGAGCAGCTGCTGCGCTTCCGGCTGAATATGTACAA
GCTACGTGAGGAGCGGGACATCAAGCCCGAGACCTTCTCCGCCCTCCTCT
CCCACATTCTGTATGAAAAACGCTTTGGGCCCTACTTCGTCGAGCCCCTT
GTGGCGGGTCTCAAAACCGAGGATAACACGCCTTTCATCTCAGGCATGGA
CCTGATAGGTGCCCCTGTCTTCGCCAAGGATTTCGTGGTGGCGGGCACGT
GCGCAGCCAATCTGTACGGGCTGTGCGAGTCCATGTGGAAGCCGGATCTG
GAGCCGGAGGAGCTGTTCGAGGTGCTGTCCCAGTCACTGCTTGCCTCCGT
AGACCGCGACGCGCTCAGTGGCTGGGGCGCAGTGGTGCACATCATTGACT
TGCGTTATGGTGTGCAGGCACAAACGGTGTCATGCAATTTCCCCAAGTCC
ATCTTAGAGTATAACGGCGGTGCATGTGTGGCCATGGTGGGCAAGAACTG
CGTGGCGATTGCCAGATGCACCCCTGAGGGAGTCACCTCGCGGACACTCA
AGACCAGACAAGATTAGGTGTACAAAATGAGCGACCGCCTGTTCGTGGGC
CTGTCAGGCCTTGCCACCGACATCCAGACCTTGGAGCAGCTGCTGCGCTT
CCGGCTGAATATGTACAAGCTACGTGAGGAGCGGGACATCAAGCCCGAGA
CCTTCTCCGCCCTCCTCTCCCACATTCTGTATGAAAAACGCTTTGGGCCC
TACTTCGTCGAGCCCCTTGTGGCGGGTCTCAAAACCGAGGATAACACGCC
TTTCATCTCAGGCATGGACCTGATAGGTGCCCCTGTCTTCGCCAAGGATT
TCGTGGTGGCGGGCACGTGCGCAGCCAATCTGTACGGGCTGTGCGAGTCC
ATGTGGAAGCCGGATCTGGAGCCGGAGGAGCTGTTCGAGGTGCTGTCCCA
GTCACTGCTTGCCTCCGTAGACCGCGACGCGCTCAGTGGCTGGGGCGCAG
TGGTGCACATCATTGACTTGCGTTATGGTGTGCAGGCACAAACGGTGTCA
TGCAATTTCCCCAAGTCCATCTTAGAGTATAACGGCGGTGCATGTGTGGC
CATGGTGGGCAAGAACTGCGTGGCGATTGCCAGATGCACCCCTGAGGGAG
TCACCTCGCGGACACTCAAGACCAGACAAGATTAGGTGTACAAAATGAGC
GACCGCCTGTTCGTGGGCCTGTCAGGCCTTGCCACCGACATCCAGACCTT
GGAGCAGCTGCTGCGCTTCCGGCTGAATATGTACAAGCTACGTGAGGAGC
GGGACATCAAGCCCGAGACCTTCTCCGCCCTCCTCTCCCACATTCTGTAT
GAAAAACGCTTTGGGCCCTACTTCGTCGAGCCCCTTGTGGCGGGTCTCAA
AACCGAGGATAACACGCCTTTCATCTCAGGCATGGACCTGATAGGTGCCC
CTGTCTTCGCCAAGGATTTCGTGGTGGCGGGCACGTGCGCAGCCAATCTG
TACGGGCTGTGCGAGTCCATGTGGAAGCCGGATCTGGAGCCGGAGGAGCT
GTTCGAGGTGCTGTCCCAGTCACTGCTTGCCTCCGTAGACCGCGACGCGC
TCAGTGGCTGGGGCGCAGTGGTGCACATCATTGACTTGCGTTATGGTGTG
CAGGCACAAACGGTGTCATGCAATTTCCCCAAGTCCATCTTAGAGTATAA
CGGCGGTGCATGTGTGGCCATGGTGGGCAAGAACTGCGTGGCGATTGCCA
GATGCACCCCTGAGGGAGTCACCTCGCGGACACTCAAGACCAGACAAGAT
TAGGTGTACAAAATGAGCGACCGCCTGTTCGTGGGCCTGTCAGGCCTTGC
CACCGACATCCAGACCTTGGAGCAGCTGCTGCGCTTCCGGCTGAATATGT
ACAAGCTACGTGAGGAGCGGGACATCAAGCCCGAGACCTTCTCCGCCCTC
CTCTCCCACATTCTGTATGAAAAACGCTTTGGGCCCTACTTCGTCGAGCC
CCTTGTGGCGGGTCTCAAAACCGAGGATAACACGCCTTTCATCTCAGGCA
TGGACCTGATAGGTGCCCCTGTCTTCGCCAAGGATTTCGTGGTGGCGGGC
ACGTGCGCAGCCAATCTGTACGGGCTGTGCGAGTCCATGTGGAAGCCGGA
TCTGGAGCCGGAGGAGCTGTTCGAGGTGCTGTCCCAGTCACTGCTTGCCT
CCGTAGACCGCGACGCGCTCAGTGGCTGGGGCGCAGTGGTGCACATCATT
GACTTGCGTTATGGTGTGCAGGCACAAACGGTGTCATGCAATTTCCCCAA
GTCCATCTTAGAGTATAACGGCGGTGCATGTGTGGCCATGGTGGGCAAGA
ACTGCGTGGCGATTGCCAGATGCACCCCTGAGGGAGTCACCTCGCGGACA
CTCAAGACCAGACAAGATTAGGTGTACAAAATGAGCGACCGCCTGTTCGT
GGGCCTGTCAGGCCTTGCCACCGACATCCAGACCTTGGAGCAGCTGCTGC
GCTTCCGGCTGAATATGTACAAGCTACGTGAGGAGCGGGACATCAAGCCC
GAGACCTTCTCCGCCCTCCTCTCCCACATTCTGTATGAAAAACGCTTTGG
GCCCTACTTCGTCGAGCCCCTTGTGGCGGGTCTCAAAACCGAGGATAACA
CGCCTTTCATCTCAGGCATGGACCTGATAGGTGCCCCTGTCTTCGCCAAG
GATTTCGTGGTGGCGGGCACGTGCGCAGCCAATCTGTACGGGCTGTGCGA
GTCCATGTGGAAGCCGGATCTGGAGCCGGAGGAGCTGTTCGAGGTGCTGT
CCCAGTCACTGCTTGCCTCCGTAGACCGCGACGCGCTCAGTGGCTGGGGC
GCAGTGGTGCACATCATTGACTTGCGTTATGGTGTGCAGGCACAAACGGT
GTCATGCAATTTCCCCAAGTCCATCTTAGAGTATAACGGCGGTGCATGTG
TGGCCATGGTGGGCAAGAACTGCGTGGCGATTGCCAGATG
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Synonyms
Publications