jgi.p|Nanoce1779_2|601645, mRNA_8338 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|601645
Unique NamemRNA_8338
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1953
Alignment locationscaffold_23:405575..407527 -

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Properties
Property NameValue
TranscriptId601731
TrackFilteredModels2
ProteinId601645
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_23supercontigscaffold_23:405575..407527 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601645gene_8338Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601645mRNA_8338-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8338CDS_8338Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8338 ID=mRNA_8338|Name=jgi.p|Nanoce1779_2|601645|organism=Nannochloropsis oceanica|type=mRNA|length=1953bp
CGGAGGAATCTCGGGCTCGGCCTTGTACAGCCTCCCTGGTCAGCTTAAGG
GCTTTCTGCAGCTTAAGACGCTCATAAATGTGGTAATTCCACTTCCTGGG
GAACGAATTGTGGTTTTTGAATTTGCGGACCGTCTGACCGACACGACTCC
CACGCACAAGTTTGTGGTTGAGATCATGGGTCGGCGGAGCAACGTCATGC
TTGTCGATGGAAATGACGACTCTGTCCTTGCGTGTGGCTACCAGGTGTCG
CCATCCAAGTCCGTGCGCTCTGTTTCAATTGGTCAACGCTACACACTTCC
GCCACCTCTCACTGCGCCAATGCCACCGCCCTTGCCCGAGGACCCAGAGG
CTCTTCGGGCTTACGAAACAGAGTTTCTGCGGCGGATAACGCTCGTGCCA
TCATACCCATTGCCCAAGGCCCTCATTTCAGCCTACCGTGGATTCAGTCC
GCAACTTGTTGAGACGATGGCCGCCGCGGTTGGCGTCAACGAAGCGGGCA
CCACGCTGGTGGGCAAGGTGGCACCTGAAGCGCTCGAGCGCCTTGTCCGC
GGACCGCTCAACCACTGGGTGAAAGTCGTCGTCATGCGCGACGCCCGGGC
TCTAGCCGATAATAAGGGTGGACTCAATGCGGATAGGACGCGTTATACAC
CCATCTTGTTCGATTCTCAAGTCGGGTGGCGGCCCGTGCCTTCTGTCCTA
GCGCTGATCGAAGGCTACTACACAGCTTATCTGGAACGGCAAGAGCTTCG
GGACCTACAACGCAAGGGCCTCAGCCGAGTCCAGGCCGTGCTCCAGCGAC
TGCAACGTACTCGTCAGGAATTCCAGCGACAGCTCGATGCTGCGGCTGAG
GAGCAGGTGGCCAAGCTGCAGACCAAGGCGGATTTGCTCACCACGTATGC
ATACAGCTGGAAGGAGGGCGACGCCGAGTGTGTGTGCTTGGATTTTGATA
CAGGGGCCGAGGTTCGTATTCCTCTTAAGCCAGGAAACTCTGCGGCAGAT
GAGGCCCAAGCTGCGTACAATCGGATTCGTAAGCTCAAGCGAAGTGTCGA
CGCCGTGTTGCCCTTGTTGCAGAAGATTGATCTCAAAGTGGCCTACGTTG
AGGAGCTGGAGTCGAGCATTCAGCAGCTTGGGGACGAGGGGATTGCTGGG
TCTGCAGCAGCAGATAGATACGGGATGAGTATCCGCAGTCGCACTCTTAC
TCAAGATTTGACAGTGATGCGGGAGATCGCCGAGGAGCTGGGCATAGATG
GGCCTGGTGGCAGTGGAAGTGGGACGACGACTTTTTTTTCAACCATTCTT
AATCGGCTCTCCTTGCCGGGGGGCGAGGGGCAACAAGAGAATGTGGCAAA
AAAAACTAAAGGCAACAAAAAGCCGACAGGAAGAGGCAAAGCCGGCAGTA
GTAAAGGCGGAAAAGCCAAGGCAAAAAGAGGTGGGAGCGGTGGAAACGCG
CCTGCAAGCATGGCCATCCAATCCTTCCGACCCCCAGCCTTGTCCGACGA
ATCGTCAACCCCGCTTAAAATTTACGTTGGGCGCAACAGCAAGCAGAATG
ACTACGTTACCTTCACTCTGGCGCGCGACCACGAGCTTTGGTTCCACGCG
CAGGGCGTCCCAGGCGCACATTGTCTTATGCGCTGTGATCCCGGGGTAGA
AGTCAGCGACGCCAATATGCAGTTCGCAGCGGATCTTGCCGCCTATTTTA
GCAAGGCGCGTGGGGCAGGCCAAGTGCCAGTGCTATGGACTTCGCCAAAG
AACCTCAAGCGCGTTGTGGGTGGCGGGCCAGGCATGGTCCAAGTAAGTAA
GGAGAAAGTACTGTGGGGCAGGCCTTCAGAAGGGGAACAGATTGTGCGAA
AGCAGGAGGAAGATGACAATGACAACAGCTAGTTATGCGCAATATGATTT
GCACAAAACAAGTAAAGTAATAAAAGTATCCAGGGTCAAACCGAAGAGCT
CAC
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protein sequence of jgi.p|Nanoce1779_2|601645

>mRNA_8338-protein ID=mRNA_8338-protein|Name=jgi.p|Nanoce1779_2|601645|organism=Nannochloropsis oceanica|type=polypeptide|length=569bp
MGRRSNVMLVDGNDDSVLACGYQVSPSKSVRSVSIGQRYTLPPPLTAPMP
PPLPEDPEALRAYETEFLRRITLVPSYPLPKALISAYRGFSPQLVETMAA
AVGVNEAGTTLVGKVAPEALERLVRGPLNHWVKVVVMRDARALADNKGGL
NADRTRYTPILFDSQVGWRPVPSVLALIEGYYTAYLERQELRDLQRKGLS
RVQAVLQRLQRTRQEFQRQLDAAAEEQVAKLQTKADLLTTYAYSWKEGDA
ECVCLDFDTGAEVRIPLKPGNSAADEAQAAYNRIRKLKRSVDAVLPLLQK
IDLKVAYVEELESSIQQLGDEGIAGSAAADRYGMSIRSRTLTQDLTVMRE
IAEELGIDGPGGSGSGTTTFFSTILNRLSLPGGEGQQENVAKKTKGNKKP
TGRGKAGSSKGGKAKAKRGGSGGNAPASMAIQSFRPPALSDESSTPLKIY
VGRNSKQNDYVTFTLARDHELWFHAQGVPGAHCLMRCDPGVEVSDANMQF
AADLAAYFSKARGAGQVPVLWTSPKNLKRVVGGGPGMVQVSKEKVLWGRP
SEGEQIVRKQEEDDNDNS*
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mRNA from alignment at scaffold_23:405575..407527-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8338 ID=mRNA_8338|Name=jgi.p|Nanoce1779_2|601645|organism=Nannochloropsis oceanica|type=mRNA|length=1953bp|location=Sequence derived from alignment at scaffold_23:405575..407527- (Nannochloropsis oceanica)
CGGAGGAATCTCGGGCTCGGCCTTGTACAGCCTCCCTGGTCAGCTTAAGG
GCTTTCTGCAGCTTAAGACGCTCATAAATGTGGTAATTCCACTTCCTGGG
GAACGAATTGTGGTTTTTGAATTTGCGGACCGTCTGACCGACACGACTCC
CACGCACAAGTTTGTGGTTGAGATCATGGGTCGGCGGAGCAACGTCATGC
TTGTCGATGGAAATGACGACTCTGTCCTTGCGTGTGGCTACCAGGTGTCG
CCATCCAAGTCCGTGCGCTCTGTTTCAATTGGTCAACGCTACACACTTCC
GCCACCTCTCACTGCGCCAATGCCACCGCCCTTGCCCGAGGACCCAGAGG
CTCTTCGGGCTTACGAAACAGAGTTTCTGCGGCGGATAACGCTCGTGCCA
TCATACCCATTGCCCAAGGCCCTCATTTCAGCCTACCGTGGATTCAGTCC
GCAACTTGTTGAGACGATGGCCGCCGCGGTTGGCGTCAACGAAGCGGGCA
CCACGCTGGTGGGCAAGGTGGCACCTGAAGCGCTCGAGCGCCTTGTCCGC
GGACCGCTCAACCACTGGGTGAAAGTCGTCGTCATGCGCGACGCCCGGGC
TCTAGCCGATAATAAGGGTGGACTCAATGCGGATAGGACGCGTTATACAC
CCATCTTGTTCGATTCTCAAGTCGGGTGGCGGCCCGTGCCTTCTGTCCTA
GCGCTGATCGAAGGCTACTACACAGCTTATCTGGAACGGCAAGAGCTTCG
GGACCTACAACGCAAGGGCCTCAGCCGAGTCCAGGCCGTGCTCCAGCGAC
TGCAACGTACTCGTCAGGAATTCCAGCGACAGCTCGATGCTGCGGCTGAG
GAGCAGGTGGCCAAGCTGCAGACCAAGGCGGATTTGCTCACCACGTATGC
ATACAGCTGGAAGGAGGGCGACGCCGAGTGTGTGTGCTTGGATTTTGATA
CAGGGGCCGAGGTTCGTATTCCTCTTAAGCCAGGAAACTCTGCGGCAGAT
GAGGCCCAAGCTGCGTACAATCGGATTCGTAAGCTCAAGCGAAGTGTCGA
CGCCGTGTTGCCCTTGTTGCAGAAGATTGATCTCAAAGTGGCCTACGTTG
AGGAGCTGGAGTCGAGCATTCAGCAGCTTGGGGACGAGGGGATTGCTGGG
TCTGCAGCAGCAGATAGATACGGGATGAGTATCCGCAGTCGCACTCTTAC
TCAAGATTTGACAGTGATGCGGGAGATCGCCGAGGAGCTGGGCATAGATG
GGCCTGGTGGCAGTGGAAGTGGGACGACGACTTTTTTTTCAACCATTCTT
AATCGGCTCTCCTTGCCGGGGGGCGAGGGGCAACAAGAGAATGTGGCAAA
AAAAACTAAAGGCAACAAAAAGCCGACAGGAAGAGGCAAAGCCGGCAGTA
GTAAAGGCGGAAAAGCCAAGGCAAAAAGAGGTGGGAGCGGTGGAAACGCG
CCTGCAAGCATGGCCATCCAATCCTTCCGACCCCCAGCCTTGTCCGACGA
ATCGTCAACCCCGCTTAAAATTTACGTTGGGCGCAACAGCAAGCAGAATG
ACTACGTTACCTTCACTCTGGCGCGCGACCACGAGCTTTGGTTCCACGCG
CAGGGCGTCCCAGGCGCACATTGTCTTATGCGCTGTGATCCCGGGGTAGA
AGTCAGCGACGCCAATATGCAGTTCGCAGCGGATCTTGCCGCCTATTTTA
GCAAGGCGCGTGGGGCAGGCCAAGTGCCAGTGCTATGGACTTCGCCAAAG
AACCTCAAGCGCGTTGTGGGTGGCGGGCCAGGCATGGTCCAAGTAAGTAA
GGAGAAAGTACTGTGGGGCAGGCCTTCAGAAGGGGAACAGATTGTGCGAA
AGCAGGAGGAAGATGACAATGACAACAGCTAGTTATGCGCAATATGATTT
GCACAAAACAAGTAAAGTAATAAAAGTATCCAGGGTCAAACCGAAGAGCT
CAC
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Coding sequence (CDS) from alignment at scaffold_23:405575..407527-

>mRNA_8338 ID=mRNA_8338|Name=jgi.p|Nanoce1779_2|601645|organism=Nannochloropsis oceanica|type=CDS|length=1707bp|location=Sequence derived from alignment at scaffold_23:405575..407527- (Nannochloropsis oceanica)
ATGGGTCGGCGGAGCAACGTCATGCTTGTCGATGGAAATGACGACTCTGT
CCTTGCGTGTGGCTACCAGGTGTCGCCATCCAAGTCCGTGCGCTCTGTTT
CAATTGGTCAACGCTACACACTTCCGCCACCTCTCACTGCGCCAATGCCA
CCGCCCTTGCCCGAGGACCCAGAGGCTCTTCGGGCTTACGAAACAGAGTT
TCTGCGGCGGATAACGCTCGTGCCATCATACCCATTGCCCAAGGCCCTCA
TTTCAGCCTACCGTGGATTCAGTCCGCAACTTGTTGAGACGATGGCCGCC
GCGGTTGGCGTCAACGAAGCGGGCACCACGCTGGTGGGCAAGGTGGCACC
TGAAGCGCTCGAGCGCCTTGTCCGCGGACCGCTCAACCACTGGGTGAAAG
TCGTCGTCATGCGCGACGCCCGGGCTCTAGCCGATAATAAGGGTGGACTC
AATGCGGATAGGACGCGTTATACACCCATCTTGTTCGATTCTCAAGTCGG
GTGGCGGCCCGTGCCTTCTGTCCTAGCGCTGATCGAAGGCTACTACACAG
CTTATCTGGAACGGCAAGAGCTTCGGGACCTACAACGCAAGGGCCTCAGC
CGAGTCCAGGCCGTGCTCCAGCGACTGCAACGTACTCGTCAGGAATTCCA
GCGACAGCTCGATGCTGCGGCTGAGGAGCAGGTGGCCAAGCTGCAGACCA
AGGCGGATTTGCTCACCACGTATGCATACAGCTGGAAGGAGGGCGACGCC
GAGTGTGTGTGCTTGGATTTTGATACAGGGGCCGAGGTTCGTATTCCTCT
TAAGCCAGGAAACTCTGCGGCAGATGAGGCCCAAGCTGCGTACAATCGGA
TTCGTAAGCTCAAGCGAAGTGTCGACGCCGTGTTGCCCTTGTTGCAGAAG
ATTGATCTCAAAGTGGCCTACGTTGAGGAGCTGGAGTCGAGCATTCAGCA
GCTTGGGGACGAGGGGATTGCTGGGTCTGCAGCAGCAGATAGATACGGGA
TGAGTATCCGCAGTCGCACTCTTACTCAAGATTTGACAGTGATGCGGGAG
ATCGCCGAGGAGCTGGGCATAGATGGGCCTGGTGGCAGTGGAAGTGGGAC
GACGACTTTTTTTTCAACCATTCTTAATCGGCTCTCCTTGCCGGGGGGCG
AGGGGCAACAAGAGAATGTGGCAAAAAAAACTAAAGGCAACAAAAAGCCG
ACAGGAAGAGGCAAAGCCGGCAGTAGTAAAGGCGGAAAAGCCAAGGCAAA
AAGAGGTGGGAGCGGTGGAAACGCGCCTGCAAGCATGGCCATCCAATCCT
TCCGACCCCCAGCCTTGTCCGACGAATCGTCAACCCCGCTTAAAATTTAC
GTTGGGCGCAACAGCAAGCAGAATGACTACGTTACCTTCACTCTGGCGCG
CGACCACGAGCTTTGGTTCCACGCGCAGGGCGTCCCAGGCGCACATTGTC
TTATGCGCTGTGATCCCGGGGTAGAAGTCAGCGACGCCAATATGCAGTTC
GCAGCGGATCTTGCCGCCTATTTTAGCAAGGCGCGTGGGGCAGGCCAAGT
GCCAGTGCTATGGACTTCGCCAAAGAACCTCAAGCGCGTTGTGGGTGGCG
GGCCAGGCATGGTCCAAGTAAGTAAGGAGAAAGTACTGTGGGGCAGGCCT
TCAGAAGGGGAACAGATTGTGCGAAAGCAGGAGGAAGATGACAATGACAA
CAGCTAG
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Synonyms
Publications