jgi.p|Nanoce1779_2|602000, mRNA_8432 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|602000
Unique Name	mRNA_8432
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1922
Alignment location	scaffold_24:253719..256026 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	602086
Track	FilteredModels2
ProteinId	602000

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_24	supercontig	scaffold_24:253719..256026 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|602000	gene_8432	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|602000	mRNA_8432-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8432	CDS_8432	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_24:253719..256026+
coding sequence from alignment at scaffold_24:253719..256026+

mRNA sequence

>mRNA_8432 ID=mRNA_8432|Name=jgi.p|Nanoce1779_2|602000|organism=Nannochloropsis oceanica|type=mRNA|length=1922bp
ACAGCGGCACGGTGTCTTTATATTTTCCCTCCAGCCTGTTTTTGCCTTTA
AACGACGCACACGAACCAACGATAGCCCCTCAGAGCCTGGTCATGTTACC
CCTCCTCAAGCTAGTCTCCATCTTGATTGTTGCAAGCCTAGGGCACGCGT
TCGGAGCATTGACTGCCACTGCTGACATTTTGTCGAGTGGGTATGTAATT
TCCGAAGGCGAGGATGCAATTTTGACCGCGGACATTTCTCAACACAAGCG
CTTCGGCGACAGCGACGATAACGACGGCAGCGACACCATCGTCGGCCTAT
TGGAGGGCGACGAGGACCAGAAACATGAGGAAATTAACGAGACCGGCACT
TCAAGCATGGATGATGAGGCTCTTCTCACTTTTGCGGGCGACACTCTCCT
CCAGGCGAGGGACCACCAAGAGGCCCACCCCGAAGAGCGACGACCCTACT
ATGCGGCCTGCCCGTACTATGATAAGCTTATGAGCGCGTTTTGGGGGTGC
CAAGTTCTACTGGGCGCTCGGAAGATACTGACAAGGTCCTGTGGTAATTT
TTCGAACATCTTCTCCCTCAAGAATCCTGCCAACCCCACCGGTCTTTGGC
CAAAGAAACTGACTGACCTCGGGCCCGACCCACCGTTTGAAGTACCCAAG
GCCCTCGTTGTCCATGAGCGAGGGACTTTTTACTGGCTCTACCGGCACGT
CAATAATATGTATAAGTATGCTTACCTGGAAGAAGAAGATGGCAGTGTAC
CGTGGCCGCCTGTGCCTCCTGGATGGAGCGAGCAACGAGTGCATTATGTC
CACGAGACTAACGTTCGAATTGTCTTTGAGGGTTTTATTGACACGCCCCT
GGCCATGACGATGATGAATGAAGAACGAAACGTAATGCTGGTGGCAATTC
GGGGCACGCTGTCGCCTCAGGAGTGGAATTTTGATTTTCAGTACCAATTT
GCCGAGGGCCAAGCCAGACAAGACTTTCCGGGTGGGCGGGTGCATCAAGG
CGTGTACGGTGTCTACACCCTCTTTGCCAAGGAGGTTCTCACAGAGGTCG
CGCGTCTCCAGCCCGCGCACGTGTTTGTCACGGGGCACAGCCTCGGAGGG
GCATTGGCCCATTTACTTTCTTACACGATAGCGGATCGGTTTCCGGGGAT
GACGGTGGACAGCGTGACATTTGCGAGTATCATGATGGCGGATGAGTCCA
TGATGGCTGCTATGGCGGAAAAGATTAATATGCGAAATATATTTTACTTG
GGGCCCGGTCAGGACGGCCTTATGTATCGGGTGGGGGATTTGATCCCCCA
AGCGACTTGTGGGCCTTTTCACGGCTGCCCCTTGCTGGGTACAGGCTCTC
GATCTGAGAGATATCAATATGCCATGCTGGGGAGCTACGTTCCATTTTAT
TCGGAAGACATGCCAAACACCTCAGCGTGGAAAATAGAGGAAAATACGGT
TCCCTTTGTTCCCTACCGCTTTTATGTCTCAACCCATTTGTGCAGCTACG
TATGCTGGCTGTCGCATGGCATTGATTCAGAGACTAGGTGCTATTTTCCC
AGGCAAAGTGTGCCCAACGAGGGCAAGTACCGCGAAGACGAAGTGTGTTG
GGTCCGGAGTACTTTGACACAGTCAGCCTAGTAGATACATGTAGGGTAAA
TTTGAGTATTATGGGCAGCTACTTGGCTGAGTTCATTACGTATTCCAGCT
GAAGAAGAATATAATAGGTGCCTTCTGCAATTCAACACCGCCGCAAGGGA
AAGGTTGGAGGAAAAGTCAGAGAGGATCTCTCTTTCCACCACGAAAAGCA
AAATATCATAGTATCACGGCAAAAAAAATGAATCAACAGTCCACTCAATC
TTAATTTGTACCAAACTAAAGAGAAAATAGGTTTGAAGGTGAACGAAAAG
GCTTCTGACCGTACGATCGAGC

protein sequence of jgi.p|Nanoce1779_2|602000

>mRNA_8432-protein ID=mRNA_8432-protein|Name=jgi.p|Nanoce1779_2|602000|organism=Nannochloropsis oceanica|type=polypeptide|length=513bp
MLPLLKLVSILIVASLGHAFGALTATADILSSGYVISEGEDAILTADISQ
HKRFGDSDDNDGSDTIVGLLEGDEDQKHEEINETGTSSMDDEALLTFAGD
TLLQARDHQEAHPEERRPYYAACPYYDKLMSAFWGCQVLLGARKILTRSC
GNFSNIFSLKNPANPTGLWPKKLTDLGPDPPFEVPKALVVHERGTFYWLY
RHVNNMYKYAYLEEEDGSVPWPPVPPGWSEQRVHYVHETNVRIVFEGFID
TPLAMTMMNEERNVMLVAIRGTLSPQEWNFDFQYQFAEGQARQDFPGGRV
HQGVYGVYTLFAKEVLTEVARLQPAHVFVTGHSLGGALAHLLSYTIADRF
PGMTVDSVTFASIMMADESMMAAMAEKINMRNIFYLGPGQDGLMYRVGDL
IPQATCGPFHGCPLLGTGSRSERYQYAMLGSYVPFYSEDMPNTSAWKIEE
NTVPFVPYRFYVSTHLCSYVCWLSHGIDSETRCYFPRQSVPNEGKYREDE
VCWVRSTLTQSA*

mRNA from alignment at scaffold_24:253719..256026+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8432 ID=mRNA_8432|Name=jgi.p|Nanoce1779_2|602000|organism=Nannochloropsis oceanica|type=mRNA|length=2308bp|location=Sequence derived from alignment at scaffold_24:253719..256026+ (Nannochloropsis oceanica)
ACAGCGGCACGGTGTCTTTATATTTTCCCTCCAGCCTGTTTTTGCCTTTA
AACGACGCACACGAACCAACGATAGCCCCTCAGAGCCTGGTCATGTTACC
CCTCCTCAAGCTAGTCTCCATCTTGATTGTTGCAAGCCTAGGGCACGCGT
TCGGAGCATTGACTGCCACTGCTGACATTTTGTCGAGTGGGTATGTAATT
TCCGAAGGCGAGGATGCAATTTTGACCGCGGACATTTCTCAACACAAGCG
CTTCGGCGACAGCGACGATAACGACGGCAGCGACACCATCGTCGGCCTAT
TGGAGGGCGACGAGGACCAGAAACATGAGGAAATTAACGAGACCGGCACT
TCAAGCATGGATGATGAGGCTCTTCTCACTTTTGCGGGCGACACTCTCCT
CCAGGCGAGGGACCACCAAGAGGCCCACCCCGAAGAGCGACGACCCTACT
ATGCGGCCTGCCCGTACTATGATAAGCTTATGAGCGCGTTTTGGGGGTGC
CAAGTTCTACTGGGCGCTCGGAAGATACTGACAAGGTCCTGTGGTAATTT
TTCGAACATCTTCTCCCTCAAGAATCCTGCCAACCCCACCGGTCTTTGGC
CAAAGAAACTGACTGACCTCGGGCCCGACCCACCGTTTGAAGTACCCAAG
GCCCTCGTTGTCCATGAGCGAGGGACTTTTTACTGGCTCTACCGGCACGT
CAATAATATGTATAAGTATGCTTACCTGGAAGAAGAAGATGGCAGTGTAC
CGTGGCCGCCTGTGCCTCCTGGATGGAGCGAGCAACGAGTGCATTATGTC
CACGAGACTAACGTTCGAATTGTCTTTGAGGGTTTTATTGACACGCCCCT
GGCCATGACGATGATGAATGAAGAACGAAACGTAATGCTGGTGGCAATTC
GGGGCACGCTGTCGCCTCAGGAGTGGAATTTTGATTTTCAGGTACACTTG
GTTTGGGTGAGGAAATGAGAGAGAGAGAGAATAACCATTCCCACTCACCC
CATCCATTCCTCCATTCATCTTCCTTGGATTCCCACATACGTTCACAGTA
CCAATTTGCCGAGGGCCAAGCCAGACAAGACTTTCCGGGTGGGCGGGTGC
ATCAAGGCGTGTACGGTGTCTACACCCTCTTTGCCAAGGAGGTTCTCACA
GAGGTCGCGCGTCTCCAGCCCGCGCACGTGTTTGTCACGGGGCACAGCCT
CGGAGGGGCATTGGCCCATTTACTTTCTTACACGATAGCGGATCGGTTTC
CGGGGATGACGGTGGACAGCGTGACATTTGCGAGTATCATGATGGCGGAT
GAGTCCATGATGGCTGCTATGGCGGAAAAGATTAATATGCGAAATATATT
TTACTTGGGGCCCGGTCAGGACGGCCTTATGTATCGGGTGGGGGATTTGA
TCCCCCAAGCGACTTGGTACGTGCTTGGAGTTCTAAAAGGGGTTTTTGGT
GAATGTTTCCGAAGGGAGAAAGAGAAGAAGGTAGAGCTAAAGGTGATGAT
CGCTTGCAAGAAATAGCGGGGATTTTTGGTTGGCTCGGCGACAACGAGGG
AACCTCTCTCGCATATCAGCTCAATCTCTTGCTCGCAGTCCGTACTTTAA
GGCCACAAAGATGATCTGTTATTTCACGAATTCCTCCTACTAGAATTTTT
ATTTTCATCGACATCGACCCCCCATCACACACAAAAAAAAAACAGTGGGC
CTTTTCACGGCTGCCCCTTGCTGGGTACAGGCTCTCGATCTGAGAGATAT
CAATATGCCATGCTGGGGAGCTACGTTCCATTTTATTCGGAAGACATGCC
AAACACCTCAGCGTGGAAAATAGAGGAAAATACGGTTCCCTTTGTTCCCT
ACCGCTTTTATGTCTCAACCCATTTGTGCAGCTACGTATGCTGGCTGTCG
CATGGCATTGATTCAGAGACTAGGTGCTATTTTCCCAGGCAAAGTGTGCC
CAACGAGGGCAAGTACCGCGAAGACGAAGTGTGTTGGGTCCGGAGTACTT
TGACACAGTCAGCCTAGTAGATACATGTAGGGTAAATTTGAGTATTATGG
GCAGCTACTTGGCTGAGTTCATTACGTATTCCAGCTGAAGAAGAATATAA
TAGGTGCCTTCTGCAATTCAACACCGCCGCAAGGGAAAGGTTGGAGGAAA
AGTCAGAGAGGATCTCTCTTTCCACCACGAAAAGCAAAATATCATAGTAT
CACGGCAAAAAAAATGAATCAACAGTCCACTCAATCTTAATTTGTACCAA
ACTAAAGAGAAAATAGGTTTGAAGGTGAACGAAAAGGCTTCTGACCGTAC
GATCGAGC

Coding sequence (CDS) from alignment at scaffold_24:253719..256026+

>mRNA_8432 ID=mRNA_8432|Name=jgi.p|Nanoce1779_2|602000|organism=Nannochloropsis oceanica|type=CDS|length=4617bp|location=Sequence derived from alignment at scaffold_24:253719..256026+ (Nannochloropsis oceanica)
ATGTTACCCCTCCTCAAGCTAGTCTCCATCTTGATTGTTGCAAGCCTAGG
GCACGCGTTCGGAGCATTGACTGCCACTGCTGACATTTTGTCGAGTGGGT
ATGTAATTTCCGAAGGCGAGGATGCAATTTTGACCGCGGACATTTCTCAA
CACAAGCGCTTCGGCGACAGCGACGATAACGACGGCAGCGACACCATCGT
CGGCCTATTGGAGGGCGACGAGGACCAGAAACATGAGGAAATTAACGAGA
CCGGCACTTCAAGCATGGATGATGAGGCTCTTCTCACTTTTGCGGGCGAC
ACTCTCCTCCAGGCGAGGGACCACCAAGAGGCCCACCCCGAAGAGCGACG
ACCCTACTATGCGGCCTGCCCGTACTATGATAAGCTTATGAGCGCGTTTT
GGGGGTGCCAAGTTCTACTGGGCGCTCGGAAGATACTGACAAGGTCCTGT
GGTAATTTTTCGAACATCTTCTCCCTCAAGAATCCTGCCAACCCCACCGG
TCTTTGGCCAAAGAAACTGACTGACCTCGGGCCCGACCCACCGTTTGAAG
TACCCAAGGCCCTCGTTGTCCATGAGCGAGGGACTTTTTACTGGCTCTAC
CGGCACGTCAATAATATGTATAAGTATGCTTACCTGGAAGAAGAAGATGG
CAGTGTACCGTGGCCGCCTGTGCCTCCTGGATGGAGCGAGCAACGAGTGC
ATTATGTCCACGAGACTAACGTTCGAATTGTCTTTGAGGGTTTTATTGAC
ACGCCCCTGGCCATGACGATGATGAATGAAGAACGAAACGTAATGCTGGT
GGCAATTCGGGGCACGCTGTCGCCTCAGGAGTGGAATTTTGATTTTCAGT
ACCAATTTGCCGAGGGCCAAGCCAGACAAGACTTTCCGGGTGGGCGGGTG
CATCAAGGCGTGTACGGTGTCTACACCCTCTTTGCCAAGGAGGTTCTCAC
AGAGGTCGCGCGTCTCCAGCCCGCGCACGTGTTTGTCACGGGGCACAGCC
TCGGAGGGGCATTGGCCCATTTACTTTCTTACACGATAGCGGATCGGTTT
CCGGGGATGACGGTGGACAGCGTGACATTTGCGAGTATCATGATGGCGGA
TGAGTCCATGATGGCTGCTATGGCGGAAAAGATTAATATGCGAAATATAT
TTTACTTGGGGCCCGGTCAGGACGGCCTTATGTATCGGGTGGGGGATTTG
ATCCCCCAAGCGACTTGTGGGCCTTTTCACGGCTGCCCCTTGCTGGGTAC
AGGCTCTCGATCTGAGAGATATCAATATGCCATGCTGGGGAGCTACGTTC
CATTTTATTCGGAAGACATGCCAAACACCTCAGCGTGGAAAATAGAGGAA
AATACGGTTCCCTTTGTTCCCTACCGCTTTTATGTCTCAACCCATTTGTG
CAGCTACGTATGCTGGCTGTCGCATGGCATTGATTCAGAGACTAGGTGCT
ATTTTCCCAGGCAAAGTGTGCCCAACGAGGGCAAGTACCGCGAAGACGAA
GTGTGTTGGGTCCGGAGTACTTTGACACAGTCAGCCTAGATGTTACCCCT
CCTCAAGCTAGTCTCCATCTTGATTGTTGCAAGCCTAGGGCACGCGTTCG
GAGCATTGACTGCCACTGCTGACATTTTGTCGAGTGGGTATGTAATTTCC
GAAGGCGAGGATGCAATTTTGACCGCGGACATTTCTCAACACAAGCGCTT
CGGCGACAGCGACGATAACGACGGCAGCGACACCATCGTCGGCCTATTGG
AGGGCGACGAGGACCAGAAACATGAGGAAATTAACGAGACCGGCACTTCA
AGCATGGATGATGAGGCTCTTCTCACTTTTGCGGGCGACACTCTCCTCCA
GGCGAGGGACCACCAAGAGGCCCACCCCGAAGAGCGACGACCCTACTATG
CGGCCTGCCCGTACTATGATAAGCTTATGAGCGCGTTTTGGGGGTGCCAA
GTTCTACTGGGCGCTCGGAAGATACTGACAAGGTCCTGTGGTAATTTTTC
GAACATCTTCTCCCTCAAGAATCCTGCCAACCCCACCGGTCTTTGGCCAA
AGAAACTGACTGACCTCGGGCCCGACCCACCGTTTGAAGTACCCAAGGCC
CTCGTTGTCCATGAGCGAGGGACTTTTTACTGGCTCTACCGGCACGTCAA
TAATATGTATAAGTATGCTTACCTGGAAGAAGAAGATGGCAGTGTACCGT
GGCCGCCTGTGCCTCCTGGATGGAGCGAGCAACGAGTGCATTATGTCCAC
GAGACTAACGTTCGAATTGTCTTTGAGGGTTTTATTGACACGCCCCTGGC
CATGACGATGATGAATGAAGAACGAAACGTAATGCTGGTGGCAATTCGGG
GCACGCTGTCGCCTCAGGAGTGGAATTTTGATTTTCAGTACCAATTTGCC
GAGGGCCAAGCCAGACAAGACTTTCCGGGTGGGCGGGTGCATCAAGGCGT
GTACGGTGTCTACACCCTCTTTGCCAAGGAGGTTCTCACAGAGGTCGCGC
GTCTCCAGCCCGCGCACGTGTTTGTCACGGGGCACAGCCTCGGAGGGGCA
TTGGCCCATTTACTTTCTTACACGATAGCGGATCGGTTTCCGGGGATGAC
GGTGGACAGCGTGACATTTGCGAGTATCATGATGGCGGATGAGTCCATGA
TGGCTGCTATGGCGGAAAAGATTAATATGCGAAATATATTTTACTTGGGG
CCCGGTCAGGACGGCCTTATGTATCGGGTGGGGGATTTGATCCCCCAAGC
GACTTGTGGGCCTTTTCACGGCTGCCCCTTGCTGGGTACAGGCTCTCGAT
CTGAGAGATATCAATATGCCATGCTGGGGAGCTACGTTCCATTTTATTCG
GAAGACATGCCAAACACCTCAGCGTGGAAAATAGAGGAAAATACGGTTCC
CTTTGTTCCCTACCGCTTTTATGTCTCAACCCATTTGTGCAGCTACGTAT
GCTGGCTGTCGCATGGCATTGATTCAGAGACTAGGTGCTATTTTCCCAGG
CAAAGTGTGCCCAACGAGGGCAAGTACCGCGAAGACGAAGTGTGTTGGGT
CCGGAGTACTTTGACACAGTCAGCCTAGATGTTACCCCTCCTCAAGCTAG
TCTCCATCTTGATTGTTGCAAGCCTAGGGCACGCGTTCGGAGCATTGACT
GCCACTGCTGACATTTTGTCGAGTGGGTATGTAATTTCCGAAGGCGAGGA
TGCAATTTTGACCGCGGACATTTCTCAACACAAGCGCTTCGGCGACAGCG
ACGATAACGACGGCAGCGACACCATCGTCGGCCTATTGGAGGGCGACGAG
GACCAGAAACATGAGGAAATTAACGAGACCGGCACTTCAAGCATGGATGA
TGAGGCTCTTCTCACTTTTGCGGGCGACACTCTCCTCCAGGCGAGGGACC
ACCAAGAGGCCCACCCCGAAGAGCGACGACCCTACTATGCGGCCTGCCCG
TACTATGATAAGCTTATGAGCGCGTTTTGGGGGTGCCAAGTTCTACTGGG
CGCTCGGAAGATACTGACAAGGTCCTGTGGTAATTTTTCGAACATCTTCT
CCCTCAAGAATCCTGCCAACCCCACCGGTCTTTGGCCAAAGAAACTGACT
GACCTCGGGCCCGACCCACCGTTTGAAGTACCCAAGGCCCTCGTTGTCCA
TGAGCGAGGGACTTTTTACTGGCTCTACCGGCACGTCAATAATATGTATA
AGTATGCTTACCTGGAAGAAGAAGATGGCAGTGTACCGTGGCCGCCTGTG
CCTCCTGGATGGAGCGAGCAACGAGTGCATTATGTCCACGAGACTAACGT
TCGAATTGTCTTTGAGGGTTTTATTGACACGCCCCTGGCCATGACGATGA
TGAATGAAGAACGAAACGTAATGCTGGTGGCAATTCGGGGCACGCTGTCG
CCTCAGGAGTGGAATTTTGATTTTCAGTACCAATTTGCCGAGGGCCAAGC
CAGACAAGACTTTCCGGGTGGGCGGGTGCATCAAGGCGTGTACGGTGTCT
ACACCCTCTTTGCCAAGGAGGTTCTCACAGAGGTCGCGCGTCTCCAGCCC
GCGCACGTGTTTGTCACGGGGCACAGCCTCGGAGGGGCATTGGCCCATTT
ACTTTCTTACACGATAGCGGATCGGTTTCCGGGGATGACGGTGGACAGCG
TGACATTTGCGAGTATCATGATGGCGGATGAGTCCATGATGGCTGCTATG
GCGGAAAAGATTAATATGCGAAATATATTTTACTTGGGGCCCGGTCAGGA
CGGCCTTATGTATCGGGTGGGGGATTTGATCCCCCAAGCGACTTGTGGGC
CTTTTCACGGCTGCCCCTTGCTGGGTACAGGCTCTCGATCTGAGAGATAT
CAATATGCCATGCTGGGGAGCTACGTTCCATTTTATTCGGAAGACATGCC
AAACACCTCAGCGTGGAAAATAGAGGAAAATACGGTTCCCTTTGTTCCCT
ACCGCTTTTATGTCTCAACCCATTTGTGCAGCTACGTATGCTGGCTGTCG
CATGGCATTGATTCAGAGACTAGGTGCTATTTTCCCAGGCAAAGTGTGCC
CAACGAGGGCAAGTACCGCGAAGACGAAGTGTGTTGGGTCCGGAGTACTT
TGACACAGTCAGCCTAG

Synonyms

Publications