jgi.p|Nanoce1779_2|201634, mRNA_8105 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|201634
Unique NamemRNA_8105
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2252
Alignment locationscaffold_25:170474..172933 +

Link to JBrowse

Properties
Property NameValue
TranscriptId201720
TrackFilteredModels2
ProteinId201634
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:170474..172933 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|201634gene_8105Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|201634mRNA_8105-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8105CDS_8105Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8105 ID=mRNA_8105|Name=jgi.p|Nanoce1779_2|201634|organism=Nannochloropsis oceanica|type=mRNA|length=2252bp
TTGACATTTAAAGATTCGCGTCGTCCACCAGCCCATTTAACCTCCCCTCC
CGAATCGCTACTACGTGTATCACTCCAGCAGTTTTCTATTATCTCCCTCA
TGCCCACCCTTTCTCCTTTATACATCTCCACGGGTTATGAACGAGTTGGT
CATGGACACGAGAGACTGCCTGACGTGGCGACGTGCTCATATGCTGCGGC
CATGAAAAGCGGAGATTGTAGCACGAGGGGAGGTCGGCGAGATGGAGGGC
GAGGCGGCAGGGGCAGTGGGCGTGTAGACTCCTCACGCGAGCAAAAGCAC
AAAGACTCGGCCGCGGCACCAGGCAATGGGCGGCGGAGGCGCAGCAGAGG
CATCGATCCTGGTGCATTTGAGCTGCAGCTGGAGGAGCAGCGGCAGAGAC
AACAGCAGCGACGAGAGGGAGGAAATGGAGGCGGAGAACGAGGAGAAGAT
AACGGAGGAGGAAGTGCAATCGGGGAACAGCGCACAAGCTCTGTTAAATC
AGGCCCGCATAACACTACACCACCGTCAATCTCCGCTCCCTCATCCTCCG
ACCAGCAGCGATCGGAGCAGCGTCGCCCTCAGTCATTAATTCGAGGCTTC
CAATACGACGAGGCCCGCGGCCGGTACTTTCCTACCTCTTCCCCCTTCTT
CTCCTCTTCTTCTTCTTCAGAGCCCTTTCGGCCTCCCAAAAATCTTCGTG
GCGCCTCTTCCTTATCGACGCTACCAGCATCCGCCTCCGCCTTCTCCTCA
TTATCCACCTCCTCCTTTTCGAAAGGAGCGCCATTTGTCTGTGTAAACTT
CACCCGCCGCCTGCGCGAACGAGAATGGCGACACGGACAACAGCAGCTTC
ACATGGGATCACTTCACAGGCTCCTTCACCTGAGCACCTCCACAGATCTA
GGCCAGGAAGGCACATTGGAGGACATCGATGTGGCGGGGGGTGGAGTAGT
AACAGGAGCTCGCAACGGCATGCTACACGTGAGCGCCCTTCCCCTATCAT
CCGACGAATTCCCTCGGCGCTGGCCTATTTTGAGCTTTCACTCTTCAGTG
GTACGCGTTCGTTGGCGGGTCGGCAGGCAGGGAGAGCTGCCGTGTCTCCT
GGCGGTTGCGACGATGGGAACGGCGGCGGGAAAGGCGGCTGTAACGGTGT
GCAAGCTCCAGGGGGAAAGTAGTGAAGAAGGAATCGGGCATGGAGAAGGA
GGAGGAAGCGATGGAGGACAGGGAGGAAGAAGAGGATGGATGGGAAGCGA
AAGGCTAATTCGAGAGGATCGATTTCCGTTGGATGCTCGGGATGTGTGGG
GGGTGGAGTGGGAGCCGGGGCAAGGGCGGCGCCTCCTTCCCTGCCTCTCC
CATGGGCCTTTGCTCGTGGTGGACGTTGAGGCGCGTCGGCAGTTACGGCA
TTCTTTTCGGTTGCCGAGCGATTGTTTTGCAGCATGTTGGAGCACTGGTG
GCGAAAGCAGCAATGGCAGCAGCAACAGTAGCAGCAGTGAGGCAGAGGAG
GGTGTGTTTTTGGGGCTGAGGAATGGACAGGTGCGGTTCGTGGACTTGAG
GGCACCGACAGGGATAGCTCAGCCCTTGACGACAATGGGTTCTGTTGTCG
ACCAGATTGAGATGCTACCGAATGGGAGGGGCTTGTTAGTGAGTGATCGT
TTGGGTGCCCTGCGTTTGCTCGACCTGCGTCTTGTGTCCTCCCTACCTGG
TGCTGGTGCTGCTGGTGCTGCTGGTGGCTTGGCTTCGACGAGGACAACGA
CCGCCTACCTACGTGACTTCCCCGCTCCCCGCATGTCCAATACTCCTGCG
AGCACTGGCTTCGTCCTCGACCGCGTAGATGGCTCCCTCGTTCTCACCCT
CACCACCCGAGGGCAGCTTCGCACCTATGACTTGAATGCACCGCAAAGGG
AAGAGGAGTGGAAAGATGGGAGGCGGACCCATGTGTGTGTCGCCGACATG
CTTCCGCTTCTCTCTTCGGGATTTGTGAATGATGCCGCACTTACTATACC
TGCTACCACTGGTGCTGCTGCGCCGCCGCGCTTCTTTTTGGCTCGTCGTT
GGGCAGGAGAGGGGTGGGATGTTTCGGGGAGAGGGCGGGAGGAATCGGGC
AGTCTTATCGGGAATGGGATTGTCGACGTGTGGCCGTCGAAGCTGGTATG
TGGGGATAGGACGTCAGGGCGCATACGGCAGTTGCGGCTGCAGAGGGAGA
GTTGCGGCCGTGAGAAGGAAGGATAGGATGGAGAAAGAGAGGAAATTCGT
GT
back to top

protein sequence of jgi.p|Nanoce1779_2|201634

>mRNA_8105-protein ID=mRNA_8105-protein|Name=jgi.p|Nanoce1779_2|201634|organism=Nannochloropsis oceanica|type=polypeptide|length=709bp
MPTLSPLYISTGYERVGHGHERLPDVATCSYAAAMKSGDCSTRGGRRDGG
RGGRGSGRVDSSREQKHKDSAAAPGNGRRRRSRGIDPGAFELQLEEQRQR
QQQRREGGNGGGERGEDNGGGSAIGEQRTSSVKSGPHNTTPPSISAPSSS
DQQRSEQRRPQSLIRGFQYDEARGRYFPTSSPFFSSSSSSEPFRPPKNLR
GASSLSTLPASASAFSSLSTSSFSKGAPFVCVNFTRRLREREWRHGQQQL
HMGSLHRLLHLSTSTDLGQEGTLEDIDVAGGGVVTGARNGMLHVSALPLS
SDEFPRRWPILSFHSSVVRVRWRVGRQGELPCLLAVATMGTAAGKAAVTV
CKLQGESSEEGIGHGEGGGSDGGQGGRRGWMGSERLIREDRFPLDARDVW
GVEWEPGQGRRLLPCLSHGPLLVVDVEARRQLRHSFRLPSDCFAACWSTG
GESSNGSSNSSSSEAEEGVFLGLRNGQVRFVDLRAPTGIAQPLTTMGSVV
DQIEMLPNGRGLLVSDRLGALRLLDLRLVSSLPGAGAAGAAGGLASTRTT
TAYLRDFPAPRMSNTPASTGFVLDRVDGSLVLTLTTRGQLRTYDLNAPQR
EEEWKDGRRTHVCVADMLPLLSSGFVNDAALTIPATTGAAAPPRFFLARR
WAGEGWDVSGRGREESGSLIGNGIVDVWPSKLVCGDRTSGRIRQLRLQRE
SCGREKEG*
back to top

mRNA from alignment at scaffold_25:170474..172933+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8105 ID=mRNA_8105|Name=jgi.p|Nanoce1779_2|201634|organism=Nannochloropsis oceanica|type=mRNA|length=2460bp|location=Sequence derived from alignment at scaffold_25:170474..172933+ (Nannochloropsis oceanica)
TTGACATTTAAAGATTCGCGTCGTCCACCAGCCCATTTAACCTCCCCTCC CGAATCGCTACTACGTGTATCACTCCAGCAGTTTTCTATTATCTCCCTCA TGCCCACCCTTTCTCCTTTATACATCTCCACGGGTTATGAACGAGTTGGT CATGGACACGAGAGACTGCCTGACGTGGCGACGTGCTCATATGCTGCGGC CATGAAAAGCGGAGATTGTAGCACGAGGGGAGGTCGGCGAGATGGAGGGC GAGGCGGCAGGGGCAGTGGGCGTGTAGACTCCTCACGCGAGCAAAAGCAC AAAGACTCGGCCGCGGCACCAGGCAATGGGCGGCGGAGGCGCAGCAGAGG CATCGATCCTGGTGCATTTGAGCTGCAGCTGGAGGAGCAGCGGCAGAGAC AACAGCAGCGACGAGAGGGAGGAAATGGAGGCGGAGAACGAGGAGAAGAT AACGGAGGAGGAAGTGCAATCGGGGAACAGCGCACAAGCTCTGTTAAATC AGGCCCGCATAACACTACACCACCGTCAATCTCCGCTCCCTCATCCTCCG ACCAGCAGCGATCGGAGCAGCGTCGCCCTCAGTCATTAATTCGAGGTACG GCTTGTACAAAAAAAGGGTCACTGCGCGGCTCCGCAAATCGTATAGCTTT TCTTTGAGCCACACGTTCTGGAGAAGTGGGCGTATACTTATTACCATCTT TTCAAAATGAAACACATTTCTGCGTGCTTTGGCGCTCCTCTTCGTCTCTT TTTCAAGGTACTCATTCTTTCCGTCATTCCTTCCTATTTGCGCCATTTCC CAGGCTTCCAATACGACGAGGCCCGCGGCCGGTACTTTCCTACCTCTTCC CCCTTCTTCTCCTCTTCTTCTTCTTCAGAGCCCTTTCGGCCTCCCAAAAA TCTTCGTGGCGCCTCTTCCTTATCGACGCTACCAGCATCCGCCTCCGCCT TCTCCTCATTATCCACCTCCTCCTTTTCGAAAGGAGCGCCATTTGTCTGT GTAAACTTCACCCGCCGCCTGCGCGAACGAGAATGGCGACACGGACAACA GCAGCTTCACATGGGATCACTTCACAGGCTCCTTCACCTGAGCACCTCCA CAGATCTAGGCCAGGAAGGCACATTGGAGGACATCGATGTGGCGGGGGGT GGAGTAGTAACAGGAGCTCGCAACGGCATGCTACACGTGAGCGCCCTTCC CCTATCATCCGACGAATTCCCTCGGCGCTGGCCTATTTTGAGCTTTCACT CTTCAGTGGTACGCGTTCGTTGGCGGGTCGGCAGGCAGGGAGAGCTGCCG TGTCTCCTGGCGGTTGCGACGATGGGAACGGCGGCGGGAAAGGCGGCTGT AACGGTGTGCAAGCTCCAGGGGGAAAGTAGTGAAGAAGGAATCGGGCATG GAGAAGGAGGAGGAAGCGATGGAGGACAGGGAGGAAGAAGAGGATGGATG GGAAGCGAAAGGCTAATTCGAGAGGATCGATTTCCGTTGGATGCTCGGGA TGTGTGGGGGGTGGAGTGGGAGCCGGGGCAAGGGCGGCGCCTCCTTCCCT GCCTCTCCCATGGGCCTTTGCTCGTGGTGGACGTTGAGGCGCGTCGGCAG TTACGGCATTCTTTTCGGTTGCCGAGCGATTGTTTTGCAGCATGTTGGAG CACTGGTGGCGAAAGCAGCAATGGCAGCAGCAACAGTAGCAGCAGTGAGG CAGAGGAGGGTGTGTTTTTGGGGCTGAGGAATGGACAGGTGCGGTTCGTG GACTTGAGGGCACCGACAGGGATAGCTCAGCCCTTGACGACAATGGGTTC TGTTGTCGACCAGATTGAGATGCTACCGAATGGGAGGGGCTTGTTAGTGA GTGATCGTTTGGGTGCCCTGCGTTTGCTCGACCTGCGTCTTGTGTCCTCC CTACCTGGTGCTGGTGCTGCTGGTGCTGCTGGTGGCTTGGCTTCGACGAG GACAACGACCGCCTACCTACGTGACTTCCCCGCTCCCCGCATGTCCAATA CTCCTGCGAGCACTGGCTTCGTCCTCGACCGCGTAGATGGCTCCCTCGTT CTCACCCTCACCACCCGAGGGCAGCTTCGCACCTATGACTTGAATGCACC GCAAAGGGAAGAGGAGTGGAAAGATGGGAGGCGGACCCATGTGTGTGTCG CCGACATGCTTCCGCTTCTCTCTTCGGGATTTGTGAATGATGCCGCACTT ACTATACCTGCTACCACTGGTGCTGCTGCGCCGCCGCGCTTCTTTTTGGC TCGTCGTTGGGCAGGAGAGGGGTGGGATGTTTCGGGGAGAGGGCGGGAGG AATCGGGCAGTCTTATCGGGAATGGGATTGTCGACGTGTGGCCGTCGAAG CTGGTATGTGGGGATAGGACGTCAGGGCGCATACGGCAGTTGCGGCTGCA GAGGGAGAGTTGCGGCCGTGAGAAGGAAGGATAGGATGGAGAAAGAGAGG AAATTCGTGT
back to top

Coding sequence (CDS) from alignment at scaffold_25:170474..172933+

>mRNA_8105 ID=mRNA_8105|Name=jgi.p|Nanoce1779_2|201634|organism=Nannochloropsis oceanica|type=CDS|length=4254bp|location=Sequence derived from alignment at scaffold_25:170474..172933+ (Nannochloropsis oceanica)
ATGCCCACCCTTTCTCCTTTATACATCTCCACGGGTTATGAACGAGTTGG
TCATGGACACGAGAGACTGCCTGACGTGGCGACGTGCTCATATGCTGCGG
CCATGAAAAGCGGAGATTGTAGCACGAGGGGAGGTCGGCGAGATGGAGGG
CGAGGCGGCAGGGGCAGTGGGCGTGTAGACTCCTCACGCGAGCAAAAGCA
CAAAGACTCGGCCGCGGCACCAGGCAATGGGCGGCGGAGGCGCAGCAGAG
GCATCGATCCTGGTGCATTTGAGCTGCAGCTGGAGGAGCAGCGGCAGAGA
CAACAGCAGCGACGAGAGGGAGGAAATGGAGGCGGAGAACGAGGAGAAGA
TAACGGAGGAGGAAGTGCAATCGGGGAACAGCGCACAAGCTCTGTTAAAT
CAGGCCCGCATAACACTACACCACCGTCAATCTCCGCTCCCTCATCCTCC
GACCAGCAGCGATCGGAGCAGCGTCGCCCTCAGTCATTAATTCGAGGCTT
CCAATACGACGAGGCCCGCGGCCGGTACTTTCCTACCTCTTCCCCCTTCT
TCTCCTCTTCTTCTTCTTCAGAGCCCTTTCGGCCTCCCAAAAATCTTCGT
GGCGCCTCTTCCTTATCGACGCTACCAGCATCCGCCTCCGCCTTCTCCTC
ATTATCCACCTCCTCCTTTTCGAAAGGAGCGCCATTTGTCTGTGTAAACT
TCACCCGCCGCCTGCGCGAACGAGAATGGCGACACGGACAACAGCAGCTT
CACATGGGATCACTTCACAGGCTCCTTCACCTGAGCACCTCCACAGATCT
AGGCCAGGAAGGCACATTGGAGGACATCGATGTGGCGGGGGGTGGAGTAG
TAACAGGAGCTCGCAACGGCATGCTACACGTGAGCGCCCTTCCCCTATCA
TCCGACGAATTCCCTCGGCGCTGGCCTATTTTGAGCTTTCACTCTTCAGT
GGTACGCGTTCGTTGGCGGGTCGGCAGGCAGGGAGAGCTGCCGTGTCTCC
TGGCGGTTGCGACGATGGGAACGGCGGCGGGAAAGGCGGCTGTAACGGTG
TGCAAGCTCCAGGGGGAAAGTAGTGAAGAAGGAATCGGGCATGGAGAAGG
AGGAGGAAGCGATGGAGGACAGGGAGGAAGAAGAGGATGGATGGGAAGCG
AAAGGCTAATTCGAGAGGATCGATTTCCGTTGGATGCTCGGGATGTGTGG
GGGGTGGAGTGGGAGCCGGGGCAAGGGCGGCGCCTCCTTCCCTGCCTCTC
CCATGGGCCTTTGCTCGTGGTGGACGTTGAGGCGCGTCGGCAGTTACGGC
ATTCTTTTCGGTTGCCGAGCGATTGTTTTGCAGCATGTTGGAGCACTGGT
GGCGAAAGCAGCAATGGCAGCAGCAACAGTAGCAGCAGTGAGGCAGAGGA
GGGTGTGTTTTTGGGGCTGAGGAATGGACAGGTGCGGTTCGTGGACTTGA
GGGCACCGACAGGGATAGCTCAGCCCTTGACGACAATGGGTTCTGTTGTC
GACCAGATTGAGATGCTACCGAATGGGAGGGGCTTGTTAGTGAGTGATCG
TTTGGGTGCCCTGCGTTTGCTCGACCTGCGTCTTGTGTCCTCCCTACCTG
GTGCTGGTGCTGCTGGTGCTGCTGGTGGCTTGGCTTCGACGAGGACAACG
ACCGCCTACCTACGTGACTTCCCCGCTCCCCGCATGTCCAATACTCCTGC
GAGCACTGGCTTCGTCCTCGACCGCGTAGATGGCTCCCTCGTTCTCACCC
TCACCACCCGAGGGCAGCTTCGCACCTATGACTTGAATGCACCGCAAAGG
GAAGAGGAGTGGAAAGATGGGAGGCGGACCCATGTGTGTGTCGCCGACAT
GCTTCCGCTTCTCTCTTCGGGATTTGTGAATGATGCCGCACTTACTATAC
CTGCTACCACTGGTGCTGCTGCGCCGCCGCGCTTCTTTTTGGCTCGTCGT
TGGGCAGGAGAGGGGTGGGATGTTTCGGGGAGAGGGCGGGAGGAATCGGG
CAGTCTTATCGGGAATGGGATTGTCGACGTGTGGCCGTCGAAGCTGGTAT
GTGGGGATAGGACGTCAGGGCGCATACGGCAGTTGCGGCTGCAGAGGGAG
AGTTGCGGCCGTGAGAAGGAAGGATAGATGCCCACCCTTTCTCCTTTATA
CATCTCCACGGGTTATGAACGAGTTGGTCATGGACACGAGAGACTGCCTG
ACGTGGCGACGTGCTCATATGCTGCGGCCATGAAAAGCGGAGATTGTAGC
ACGAGGGGAGGTCGGCGAGATGGAGGGCGAGGCGGCAGGGGCAGTGGGCG
TGTAGACTCCTCACGCGAGCAAAAGCACAAAGACTCGGCCGCGGCACCAG
GCAATGGGCGGCGGAGGCGCAGCAGAGGCATCGATCCTGGTGCATTTGAG
CTGCAGCTGGAGGAGCAGCGGCAGAGACAACAGCAGCGACGAGAGGGAGG
AAATGGAGGCGGAGAACGAGGAGAAGATAACGGAGGAGGAAGTGCAATCG
GGGAACAGCGCACAAGCTCTGTTAAATCAGGCCCGCATAACACTACACCA
CCGTCAATCTCCGCTCCCTCATCCTCCGACCAGCAGCGATCGGAGCAGCG
TCGCCCTCAGTCATTAATTCGAGGCTTCCAATACGACGAGGCCCGCGGCC
GGTACTTTCCTACCTCTTCCCCCTTCTTCTCCTCTTCTTCTTCTTCAGAG
CCCTTTCGGCCTCCCAAAAATCTTCGTGGCGCCTCTTCCTTATCGACGCT
ACCAGCATCCGCCTCCGCCTTCTCCTCATTATCCACCTCCTCCTTTTCGA
AAGGAGCGCCATTTGTCTGTGTAAACTTCACCCGCCGCCTGCGCGAACGA
GAATGGCGACACGGACAACAGCAGCTTCACATGGGATCACTTCACAGGCT
CCTTCACCTGAGCACCTCCACAGATCTAGGCCAGGAAGGCACATTGGAGG
ACATCGATGTGGCGGGGGGTGGAGTAGTAACAGGAGCTCGCAACGGCATG
CTACACGTGAGCGCCCTTCCCCTATCATCCGACGAATTCCCTCGGCGCTG
GCCTATTTTGAGCTTTCACTCTTCAGTGGTACGCGTTCGTTGGCGGGTCG
GCAGGCAGGGAGAGCTGCCGTGTCTCCTGGCGGTTGCGACGATGGGAACG
GCGGCGGGAAAGGCGGCTGTAACGGTGTGCAAGCTCCAGGGGGAAAGTAG
TGAAGAAGGAATCGGGCATGGAGAAGGAGGAGGAAGCGATGGAGGACAGG
GAGGAAGAAGAGGATGGATGGGAAGCGAAAGGCTAATTCGAGAGGATCGA
TTTCCGTTGGATGCTCGGGATGTGTGGGGGGTGGAGTGGGAGCCGGGGCA
AGGGCGGCGCCTCCTTCCCTGCCTCTCCCATGGGCCTTTGCTCGTGGTGG
ACGTTGAGGCGCGTCGGCAGTTACGGCATTCTTTTCGGTTGCCGAGCGAT
TGTTTTGCAGCATGTTGGAGCACTGGTGGCGAAAGCAGCAATGGCAGCAG
CAACAGTAGCAGCAGTGAGGCAGAGGAGGGTGTGTTTTTGGGGCTGAGGA
ATGGACAGGTGCGGTTCGTGGACTTGAGGGCACCGACAGGGATAGCTCAG
CCCTTGACGACAATGGGTTCTGTTGTCGACCAGATTGAGATGCTACCGAA
TGGGAGGGGCTTGTTAGTGAGTGATCGTTTGGGTGCCCTGCGTTTGCTCG
ACCTGCGTCTTGTGTCCTCCCTACCTGGTGCTGGTGCTGCTGGTGCTGCT
GGTGGCTTGGCTTCGACGAGGACAACGACCGCCTACCTACGTGACTTCCC
CGCTCCCCGCATGTCCAATACTCCTGCGAGCACTGGCTTCGTCCTCGACC
GCGTAGATGGCTCCCTCGTTCTCACCCTCACCACCCGAGGGCAGCTTCGC
ACCTATGACTTGAATGCACCGCAAAGGGAAGAGGAGTGGAAAGATGGGAG
GCGGACCCATGTGTGTGTCGCCGACATGCTTCCGCTTCTCTCTTCGGGAT
TTGTGAATGATGCCGCACTTACTATACCTGCTACCACTGGTGCTGCTGCG
CCGCCGCGCTTCTTTTTGGCTCGTCGTTGGGCAGGAGAGGGGTGGGATGT
TTCGGGGAGAGGGCGGGAGGAATCGGGCAGTCTTATCGGGAATGGGATTG
TCGACGTGTGGCCGTCGAAGCTGGTATGTGGGGATAGGACGTCAGGGCGC
ATACGGCAGTTGCGGCTGCAGAGGGAGAGTTGCGGCCGTGAGAAGGAAGG
ATAG
back to top
Synonyms
Publications