jgi.p|Nanoce1779_2|602738, mRNA_8177 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|602738
Unique NamemRNA_8177
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1082
Alignment locationscaffold_25:345500..346845 +

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Properties
Property NameValue
TranscriptId602824
TrackFilteredModels2
ProteinId602738
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:345500..346845 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602738gene_8177Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602738mRNA_8177-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8177CDS_8177Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8177 ID=mRNA_8177|Name=jgi.p|Nanoce1779_2|602738|organism=Nannochloropsis oceanica|type=mRNA|length=1082bp
AGACACACACTCCCAATACTGGGTGGGTGACATTATATCAGTGGATAAAG
GTGCCTTCCAGGTCTCTCCTTCCTGGCAAGAGCCGCAATATTGCCACCTC
CTTTCCTCCCTTCTCCCCCAGCCTCTCCTACTCCTAGCCATGCCGCCGCT
GCCTCCGGTCTCCCCCCCCACCTCCCCTTCCCCCTCGCTCCTCTCCTTTG
CTGCCCTCCATCCCCATCATCACCGCTCGGCGACAACTGCATCCATGCCT
CCTGACATTGCCGAGAAAATTTCTCGCTCGGAAGCACGGGCGGAACGCAG
CAAGCGCCGGGGGTCCCTGGGTGTGGAGCTCCCAGAGCGTGACTTGAGAC
GGCAGATTGGCTGCCGGTTAATGAATCTGGGAAATAGCTGCTATCAGAAT
TGTATTCTGCAGATACTGGTCAACTTGCCTGATGTCAGAGAGAGGCTAGT
GGCGTTCGCGGGGAGGCATCAGGACTGCGAGGAAGAATACTGCTTCCCCA
GGGATCTATGTCATCACGCCGTGGAGGTGCCTGTCGCGGCCGCTAAGGGC
CAAGCCCTTTCTGCCACGTGGGTACTCAAGTACCAGCAAGCAGGGGAAGG
CGTGATGGGCGACTTGTACAGGCAATCGGACCCTGCCTGTTTTCTCCACG
CGGCTGCCGATTGGTGCGTCGACCGTGCCACATCGCCATCCCATGCCCTC
CCCCTCTTTTCGGACCTGTGGGAGGGGCAAGCTTTCGAGCATGAGTGGGT
GTGTCCGACCGCCTTCCCTGCCTGTCCCGCCCGTCCTAAGGACTTGCACG
CACAGCCGTTTTTGATGCTAAACATACCCGTGCCTTCCTCCCCTTCCTCT
CTCGAGACCTGCCTGAAGGAGAGTGTGTTTGAGGATAAGGTGGTGGGAGG
GAGGGAATGCGAGGAGGTGGGATGTCCGTATGGACGGTCTCCTCCTGCTG
CTGCTGCTACTGCTGCTGCTGCTGCGGGAGACGAGGGCAGGAAGGAGGGT
GAGAAGGAAGAGGGTTGTGATGAGAGTGGCGGAGGAGGAGCAGCGAAAGA
AGGTGCAGCAGGAGAAGGAATCACAGAAGGGG
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protein sequence of jgi.p|Nanoce1779_2|602738

>mRNA_8177-protein ID=mRNA_8177-protein|Name=jgi.p|Nanoce1779_2|602738|organism=Nannochloropsis oceanica|type=polypeptide|length=314bp
MPPLPPVSPPTSPSPSLLSFAALHPHHHRSATTASMPPDIAEKISRSEAR
AERSKRRGSLGVELPERDLRRQIGCRLMNLGNSCYQNCILQILVNLPDVR
ERLVAFAGRHQDCEEEYCFPRDLCHHAVEVPVAAAKGQALSATWVLKYQQ
AGEGVMGDLYRQSDPACFLHAAADWCVDRATSPSHALPLFSDLWEGQAFE
HEWVCPTAFPACPARPKDLHAQPFLMLNIPVPSSPSSLETCLKESVFEDK
VVGGRECEEVGCPYGRSPPAAAATAAAAAGDEGRKEGEKEEGCDESGGGG
AAKEGAAGEGITEG
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mRNA from alignment at scaffold_25:345500..346845+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8177 ID=mRNA_8177|Name=jgi.p|Nanoce1779_2|602738|organism=Nannochloropsis oceanica|type=mRNA|length=1346bp|location=Sequence derived from alignment at scaffold_25:345500..346845+ (Nannochloropsis oceanica)
AGACACACACTCCCAATACTGGGTGGGTGACATTATATCAGTGGATAAAG
GTGCCTTCCAGGTCTCTCCTTCCTGGCAAGAGCCGCAATATTGCCACCTC
CTTTCCTCCCTTCTCCCCCAGCCTCTCCTACTCCTAGCCATGCCGCCGCT
GCCTCCGGTCTCCCCCCCCACCTCCCCTTCCCCCTCGCTCCTCTCCTTTG
CTGCCCTCCATCCCCATCATCACCGCTCGGCGACAACTGCATCCATGCCT
CCTGACATTGCCGAGAAAATTTCTCGCTCGGAAGCACGGGCGGAACGCAG
CAAGCGCCGGGGGTCCCTGGGTGTGGAGCTCCCAGAGCGTGACTTGAGAC
GGCAGATTGGCTGCCGGTTAATGAATCTGGGAAATAGCTGCTATCAGAAT
TGTATTCTGCAGATACTGGTCAACTTGCCTGATGTCAGAGAGAGGCTAGT
GGCGTTCGCGGGGAGGCATCAGGTACGGAGGGAGGGAGGGAGGGAGGAGA
GGAGATAAAGGGAGGGAATGGTTCTTGAAAATGTCATTGCCATGCGATCT
CTACGATACCATCAAACCAATTTGGTATGCTTTGTCTCTTTCTCCCCCTT
CCTCCTTCCCGTGTTTCCCAGGACTGCGAGGAAGAATACTGCTTCCCCAG
GGATCTATGTCATCACGCCGTGGAGGTGCCTGTCGCGGCCGCTAAGGGCC
AAGCCCTTTCTGCCACGTGGGTACTCAAGTACCAGCAAGCAGGGGAAGGC
GTGATGGGCGACTTGTACAGGCAATCGGACCCTGCCTGTTTTCTCCACGC
GGCTGCCGATTGGTGGGGTGCAAGGGAGGGAGGGAGGGAGAGAGGGAGGG
AGGGGGTTCACGTCCCAACGACAGTAGGTTTCCAATACTCCCTCTCGCCA
TTCCTCCTTCCCTCCTTCCCTCCCTAGGTGCGTCGACCGTGCCACATCGC
CATCCCATGCCCTCCCCCTCTTTTCGGACCTGTGGGAGGGGCAAGCTTTC
GAGCATGAGTGGGTGTGTCCGACCGCCTTCCCTGCCTGTCCCGCCCGTCC
TAAGGACTTGCACGCACAGCCGTTTTTGATGCTAAACATACCCGTGCCTT
CCTCCCCTTCCTCTCTCGAGACCTGCCTGAAGGAGAGTGTGTTTGAGGAT
AAGGTGGTGGGAGGGAGGGAATGCGAGGAGGTGGGATGTCCGTATGGACG
GTCTCCTCCTGCTGCTGCTGCTACTGCTGCTGCTGCTGCGGGAGACGAGG
GCAGGAAGGAGGGTGAGAAGGAAGAGGGTTGTGATGAGAGTGGCGGAGGA
GGAGCAGCGAAAGAAGGTGCAGCAGGAGAAGGAATCACAGAAGGGG
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Coding sequence (CDS) from alignment at scaffold_25:345500..346845+

>mRNA_8177 ID=mRNA_8177|Name=jgi.p|Nanoce1779_2|602738|organism=Nannochloropsis oceanica|type=CDS|length=2829bp|location=Sequence derived from alignment at scaffold_25:345500..346845+ (Nannochloropsis oceanica)
ATGCCGCCGCTGCCTCCGGTCTCCCCCCCCACCTCCCCTTCCCCCTCGCT
CCTCTCCTTTGCTGCCCTCCATCCCCATCATCACCGCTCGGCGACAACTG
CATCCATGCCTCCTGACATTGCCGAGAAAATTTCTCGCTCGGAAGCACGG
GCGGAACGCAGCAAGCGCCGGGGGTCCCTGGGTGTGGAGCTCCCAGAGCG
TGACTTGAGACGGCAGATTGGCTGCCGGTTAATGAATCTGGGAAATAGCT
GCTATCAGAATTGTATTCTGCAGATACTGGTCAACTTGCCTGATGTCAGA
GAGAGGCTAGTGGCGTTCGCGGGGAGGCATCAGGACTGCGAGGAAGAATA
CTGCTTCCCCAGGGATCTATGTCATCACGCCGTGGAGGTGCCTGTCGCGG
CCGCTAAGGGCCAAGCCCTTTCTGCCACGTGGGTACTCAAGTACCAGCAA
GCAGGGGAAGGCGTGATGGGCGACTTGTACAGGCAATCGGACCCTGCCTG
TTTTCTCCACGCGGCTGCCGATTGGTGCGTCGACCGTGCCACATCGCCAT
CCCATGCCCTCCCCCTCTTTTCGGACCTGTGGGAGGGGCAAGCTTTCGAG
CATGAGTGGGTGTGTCCGACCGCCTTCCCTGCCTGTCCCGCCCGTCCTAA
GGACTTGCACGCACAGCCGTTTTTGATGCTAAACATACCCGTGCCTTCCT
CCCCTTCCTCTCTCGAGACCTGCCTGAAGGAGAGTGTGTTTGAGGATAAG
GTGGTGGGAGGGAGGGAATGCGAGGAGGTGGGATGTCCGTATGGACGGTC
TCCTCCTGCTGCTGCTGCTACTGCTGCTGCTGCTGCGGGAGACGAGGGCA
GGAAGGAGGGTGAGAAGGAAGAGGGTTGTGATGAGAGTGGCGGAGGAGGA
GCAGCGAAAGAAGGTGCAGCAGGAGAAGGAATCACAGAAGGGGATGCCGC
CGCTGCCTCCGGTCTCCCCCCCCACCTCCCCTTCCCCCTCGCTCCTCTCC
TTTGCTGCCCTCCATCCCCATCATCACCGCTCGGCGACAACTGCATCCAT
GCCTCCTGACATTGCCGAGAAAATTTCTCGCTCGGAAGCACGGGCGGAAC
GCAGCAAGCGCCGGGGGTCCCTGGGTGTGGAGCTCCCAGAGCGTGACTTG
AGACGGCAGATTGGCTGCCGGTTAATGAATCTGGGAAATAGCTGCTATCA
GAATTGTATTCTGCAGATACTGGTCAACTTGCCTGATGTCAGAGAGAGGC
TAGTGGCGTTCGCGGGGAGGCATCAGGACTGCGAGGAAGAATACTGCTTC
CCCAGGGATCTATGTCATCACGCCGTGGAGGTGCCTGTCGCGGCCGCTAA
GGGCCAAGCCCTTTCTGCCACGTGGGTACTCAAGTACCAGCAAGCAGGGG
AAGGCGTGATGGGCGACTTGTACAGGCAATCGGACCCTGCCTGTTTTCTC
CACGCGGCTGCCGATTGGTGCGTCGACCGTGCCACATCGCCATCCCATGC
CCTCCCCCTCTTTTCGGACCTGTGGGAGGGGCAAGCTTTCGAGCATGAGT
GGGTGTGTCCGACCGCCTTCCCTGCCTGTCCCGCCCGTCCTAAGGACTTG
CACGCACAGCCGTTTTTGATGCTAAACATACCCGTGCCTTCCTCCCCTTC
CTCTCTCGAGACCTGCCTGAAGGAGAGTGTGTTTGAGGATAAGGTGGTGG
GAGGGAGGGAATGCGAGGAGGTGGGATGTCCGTATGGACGGTCTCCTCCT
GCTGCTGCTGCTACTGCTGCTGCTGCTGCGGGAGACGAGGGCAGGAAGGA
GGGTGAGAAGGAAGAGGGTTGTGATGAGAGTGGCGGAGGAGGAGCAGCGA
AAGAAGGTGCAGCAGGAGAAGGAATCACAGAAGGGGATGCCGCCGCTGCC
TCCGGTCTCCCCCCCCACCTCCCCTTCCCCCTCGCTCCTCTCCTTTGCTG
CCCTCCATCCCCATCATCACCGCTCGGCGACAACTGCATCCATGCCTCCT
GACATTGCCGAGAAAATTTCTCGCTCGGAAGCACGGGCGGAACGCAGCAA
GCGCCGGGGGTCCCTGGGTGTGGAGCTCCCAGAGCGTGACTTGAGACGGC
AGATTGGCTGCCGGTTAATGAATCTGGGAAATAGCTGCTATCAGAATTGT
ATTCTGCAGATACTGGTCAACTTGCCTGATGTCAGAGAGAGGCTAGTGGC
GTTCGCGGGGAGGCATCAGGACTGCGAGGAAGAATACTGCTTCCCCAGGG
ATCTATGTCATCACGCCGTGGAGGTGCCTGTCGCGGCCGCTAAGGGCCAA
GCCCTTTCTGCCACGTGGGTACTCAAGTACCAGCAAGCAGGGGAAGGCGT
GATGGGCGACTTGTACAGGCAATCGGACCCTGCCTGTTTTCTCCACGCGG
CTGCCGATTGGTGCGTCGACCGTGCCACATCGCCATCCCATGCCCTCCCC
CTCTTTTCGGACCTGTGGGAGGGGCAAGCTTTCGAGCATGAGTGGGTGTG
TCCGACCGCCTTCCCTGCCTGTCCCGCCCGTCCTAAGGACTTGCACGCAC
AGCCGTTTTTGATGCTAAACATACCCGTGCCTTCCTCCCCTTCCTCTCTC
GAGACCTGCCTGAAGGAGAGTGTGTTTGAGGATAAGGTGGTGGGAGGGAG
GGAATGCGAGGAGGTGGGATGTCCGTATGGACGGTCTCCTCCTGCTGCTG
CTGCTACTGCTGCTGCTGCTGCGGGAGACGAGGGCAGGAAGGAGGGTGAG
AAGGAAGAGGGTTGTGATGAGAGTGGCGGAGGAGGAGCAGCGAAAGAAGG
TGCAGCAGGAGAAGGAATCACAGAAGGGG
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Synonyms
Publications