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Properties
| Property Name | Value |
|---|
| TranscriptId | 604671 |
| Track | FilteredModels2 |
| ProteinId | 604585 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_29 | supercontig | scaffold_29:277798..279870 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_8942 ID=mRNA_8942|Name=jgi.p|Nanoce1779_2|604585|organism=Nannochloropsis oceanica|type=mRNA|length=1455bp
CGGGATGAGTGAATGACACTTGGACAAAGCGAAAGCAAAGCCCATGCACT
TCAGATACAACCAATGAACAAACATGTAATCGACCACATCGTCATGCGTA
CGATGATTTGCCTAGAAAGTGCTGCCCATTTCCGTCTTCTTGAGTGATTT
TGGGCGAATGCCGAAAGCCGAAACCCCATCGGCGAGTTGACACTCTACTT
CTGTGGACCGATCGAAATGCACCTTGCGCGACCTGCGGACAACGAGAATA
TTACCAGTTTGTGTTCAGGTTCTTCTTACGCAATTGTATGAGTCCCAAGG
TAGAGTGGGGCCAGTCCCTCGACAGATTGACGTGTCTCTCAGCCTCCCCA
TCCGTCACAAAGCAACGTCAGCGGCGACACCACCAAGCGTTCTCATGCTT
CCCCCACTTTGTCTTTGGACGCAGATAGGGATGAGAAACACACGTCAACT
CTCACATCACTATTCCGATTTCTCCCGCAACAGCACGTGCCTGTAGCCGC
CGCGCTCGTGCCTCTAATGCCTTTCCCCCGCGCCTCCTTCATTTCTCTCA
CCCTGAGGCTCACTCGCAAATATGCCCCCTTTAACTCTACCGCATCACAC
TCACATAAACAAGCCACATCGCCCTTTTTCGTCACAATGCCTCGCCTCGT
CCCGTGGAGCGGCACCCTTCTTCCTGTTCTGAGCGTCCTTGCTGTGTTAT
TTTTTTCCTTGCCAGTGGCACGGGCATGGCGCACCCCGCTGTCCTCGAAT
CACTTAAGCCTCAGCACCTTTGCTAGCAGCAGGAGAAGAGCAGCAGCTGC
AGCAGCCACAACAACGACAATAACAACGTCCTCTACTTTCCGGCAAATGC
ATCCCTGGACGCGATGTTTCGCCGTCTTTCCGGACGACGACGAACTGCGG
AGTTCCAACGAGGGCCGGGGCAGTGGAGGTGGTGGAGGAGGTGGAGGGCA
AGGACCTGATGAGGAGCAACGCTCGGGGTCGGACATAGTTATGGTGGACA
TGACCGAGGACGGGAAGCCCCCCCGTGTGACGATCCAGGCCTCGTACAGC
GCCACGGACGATCTTGCGCCGGTCATCACCACTTTGTGGAAAGGCATCGT
GTTACTCGACAGAGAAGGCACGTCCAGGCGGGCGGCGCAGAATACGATCC
TGTCCGTAGGCGCGCTCGGCCTGGGCTCCCTCCTCCTCTTCCTCCTCCTC
CTTCCCGCGGGCTTTATCCACGGTCCAACGGACTCGGCGACCGTTAATTC
CCGCCCAACGTTCAATACGCGCACCTACATCAACCCCGATCAGGTGCTTG
AGGAAGATTTCTACCGCGCGGGCGGAGTGCGTCTGTGGGAGGATGAGGTT
TATGACGACGAAGATTTCTGAGGAGGGGGAGGGAGGGAAGGAAGGAAGGA
GGGGACGGACGAAAGGAGGGGGGGTTAGGGTGTACAGTGAAGGAGGGGGA
GGCAG back to topprotein sequence of jgi.p|Nanoce1779_2|604585 >mRNA_8942-protein ID=mRNA_8942-protein|Name=jgi.p|Nanoce1779_2|604585|organism=Nannochloropsis oceanica|type=polypeptide|length=285bp
MPFPRASFISLTLRLTRKYAPFNSTASHSHKQATSPFFVTMPRLVPWSGT
LLPVLSVLAVLFFSLPVARAWRTPLSSNHLSLSTFASSRRRAAAAAATTT
TITTSSTFRQMHPWTRCFAVFPDDDELRSSNEGRGSGGGGGGGGQGPDEE
QRSGSDIVMVDMTEDGKPPRVTIQASYSATDDLAPVITTLWKGIVLLDRE
GTSRRAAQNTILSVGALGLGSLLLFLLLLPAGFIHGPTDSATVNSRPTFN
TRTYINPDQVLEEDFYRAGGVRLWEDEVYDDEDF* back to topmRNA from alignment at scaffold_29:277798..279870- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_8942 ID=mRNA_8942|Name=jgi.p|Nanoce1779_2|604585|organism=Nannochloropsis oceanica|type=mRNA|length=2073bp|location=Sequence derived from alignment at scaffold_29:277798..279870- (Nannochloropsis oceanica)
CGGGATGAGTGAATGACACTTGGACAAAGCGAAAGCAAAGCCCATGCACT
TCAGATACAACCAATGAACAAACATGTAATCGACCACATCGTCATGCGTA
CGATGATTTGCCTAGAAAGTGCTGCCCATTTCCGTCTTCTTGAGTGATTT
TGGGCGAATGCCGAAAGCCGAAACCCCATCGGCGAGTTGACACTCTACTT
CTGTGGACCGATCGAAATGCACCTTGCGCGACCTGCGGACAACGAGAATA
TTACCAGTTTGTGTTCAGGTTCTTCTTACGCAATTGTATGAGTCCCAAGG
TAGAGTGGGGCCAGTCCCTCGACAGATTGACGTGTCTCTCAGCCTCCCCA
TCCGTCACAAAGCAACGTCAGCGGCGACACCACCAAGCGTTCTCATGCTT
CCCCCACTTTGTCTTTGGACGCAGATAGGGATGAGAAACACACGTCAACT
CTCACATCACTATTCCGATTTCTCCCGCAACAGCACGTGCCTGTAGCCGC
CGCGCTCGTGCCTCTAATGCCTTTCCCCCGCGCCTCCTTCATTTCTCTCA
CCCTGAGGCTCACTCGCAAATATGCCCCCTTTAACTCTACCGCATCACAC
TCACATAAACAAGCCACATCGCCCTTTTTCGTCACAATGCCTCGCCTCGT
CCCGTGGAGCGGCACCCTTCTTCCTGTTCTGAGCGTCCTTGCTGTGTTAT
TTTTTTCCTTGCCAGTGGCACGGGCATGGCGCACCCCGCTGTCCTCGAAT
CACTTAAGCCTCAGCACCTTTGCTAGCAGCAGGAGAAGAGCAGCAGCTGC
AGCAGCCACAACAACGACAATAACAACGTCCTCTACTTTCCGGCAAATGC
ATCCCTGGACGCGATGTTTCGCCGTCTTTCCGGACGACGACGAACTGCGG
AGTTCCAACGAGGGCCGGGGCAGTGGAGGTGGTGGAGGAGGTGGAGGGCA
AGGACCTGATGAGGAGCAACGCTCGGGGTCGGACATAGTTATGGTGGACA
TGACCGAGGTAAGGAAGGGAGGGAGGGAGAAAGGGAGGAAGAGAGTGGGG
GAAGGAGGACTGAGTCTTCGTGCCGCTTGACAAACAGAGAAGCTGGCCAT
TGGTTTACCCTATCCTCCTTCCCTCCTTCCTTCCCTTCCTCCCTTCCTCC
TTCCCCCCCTCCCTCGGTAGGACGGGAAGCCCCCCCGTGTGACGATCCAG
GCCTCGTACAGCGCCACGGACGATCTTGCGCCGGTCATCACCACTTTGTG
GAAAGGCATCGTGTTACTCGACAGAGAAGGCACGTCCAGGCGGGCGGCGC
AGAATACGATCCTGTCCGTAGGGTAAGTTGAAGGGGAGACCGGACGGAGG
GAATGAGAAAGGGAGGGAGGGAGGACACAAAGCCAACAGATGTATTTCAT
CTTCACTCCTCATCCCTCTTCCGCCCCTCGGTCCCTCCCTCCTGCCACTC
GGGACAGCGCGCTCGGCCTGGGCTCCCTCCTCCTCTTCCTCCTCCTCCTT
CCCGCGGGCTTTATCCACGGTCCAACGGACTCGGCGACCGTTAATTCCCG
CCCAACGTTCAATACGCGCACCTACATCAACCCCGATCAGGTAATTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTGGGCTCGACGATTCCACCAGGATGCC
TCCCGTCCAATGTTCCCTCCCTCCCTCCCTCCCACCCTCCTTCCCACCTT
CCCTCCCGCCCTACTTCCCTCCTTCCTCTCCCTCCTTCACCCGTCCCTAC
TTCCCTCCATTTTGACCCTCCCCCCTTCTCCGTCTCTCCCTCCTTTGCTT
CATGCTTTTAGAGGGGAAAGTGAAGAATATCTCACCAGCCGGCTCTCTCA
CCCCGAACCTCCCTCCTTCCTTCCCTCCCCCCCTCTCCCTCGTTCCCTCC
CTCACTGACAGGTGCTTGAGGAAGATTTCTACCGCGCGGGCGGAGTGCGT
CTGTGGGAGGATGAGGTTTATGACGACGAAGATTTCTGAGGAGGGGGAGG
GAGGGAAGGAAGGAAGGAGGGGACGGACGAAAGGAGGGGGGGTTAGGGTG
TACAGTGAAGGAGGGGGAGGCAG back to topCoding sequence (CDS) from alignment at scaffold_29:277798..279870- >mRNA_8942 ID=mRNA_8942|Name=jgi.p|Nanoce1779_2|604585|organism=Nannochloropsis oceanica|type=CDS|length=3420bp|location=Sequence derived from alignment at scaffold_29:277798..279870- (Nannochloropsis oceanica)
GTGCTTGAGGAAGATTTCTACCGCGCGGGCGGAGTGCGTCTGTGGGAGGA
TGAGGTTTATGACGACGAAGATTTCTGACGCGCTCGGCCTGGGCTCCCTC
CTCCTCTTCCTCCTCCTCCTTCCCGCGGGCTTTATCCACGGTCCAACGGA
CTCGGCGACCGTTAATTCCCGCCCAACGTTCAATACGCGCACCTACATCA
ACCCCGATCAGGACGGGAAGCCCCCCCGTGTGACGATCCAGGCCTCGTAC
AGCGCCACGGACGATCTTGCGCCGGTCATCACCACTTTGTGGAAAGGCAT
CGTGTTACTCGACAGAGAAGGCACGTCCAGGCGGGCGGCGCAGAATACGA
TCCTGTCCGTAGGATGCCTTTCCCCCGCGCCTCCTTCATTTCTCTCACCC
TGAGGCTCACTCGCAAATATGCCCCCTTTAACTCTACCGCATCACACTCA
CATAAACAAGCCACATCGCCCTTTTTCGTCACAATGCCTCGCCTCGTCCC
GTGGAGCGGCACCCTTCTTCCTGTTCTGAGCGTCCTTGCTGTGTTATTTT
TTTCCTTGCCAGTGGCACGGGCATGGCGCACCCCGCTGTCCTCGAATCAC
TTAAGCCTCAGCACCTTTGCTAGCAGCAGGAGAAGAGCAGCAGCTGCAGC
AGCCACAACAACGACAATAACAACGTCCTCTACTTTCCGGCAAATGCATC
CCTGGACGCGATGTTTCGCCGTCTTTCCGGACGACGACGAACTGCGGAGT
TCCAACGAGGGCCGGGGCAGTGGAGGTGGTGGAGGAGGTGGAGGGCAAGG
ACCTGATGAGGAGCAACGCTCGGGGTCGGACATAGTTATGGTGGACATGA
CCGAGGTGCTTGAGGAAGATTTCTACCGCGCGGGCGGAGTGCGTCTGTGG
GAGGATGAGGTTTATGACGACGAAGATTTCTGACGCGCTCGGCCTGGGCT
CCCTCCTCCTCTTCCTCCTCCTCCTTCCCGCGGGCTTTATCCACGGTCCA
ACGGACTCGGCGACCGTTAATTCCCGCCCAACGTTCAATACGCGCACCTA
CATCAACCCCGATCAGGACGGGAAGCCCCCCCGTGTGACGATCCAGGCCT
CGTACAGCGCCACGGACGATCTTGCGCCGGTCATCACCACTTTGTGGAAA
GGCATCGTGTTACTCGACAGAGAAGGCACGTCCAGGCGGGCGGCGCAGAA
TACGATCCTGTCCGTAGGATGCCTTTCCCCCGCGCCTCCTTCATTTCTCT
CACCCTGAGGCTCACTCGCAAATATGCCCCCTTTAACTCTACCGCATCAC
ACTCACATAAACAAGCCACATCGCCCTTTTTCGTCACAATGCCTCGCCTC
GTCCCGTGGAGCGGCACCCTTCTTCCTGTTCTGAGCGTCCTTGCTGTGTT
ATTTTTTTCCTTGCCAGTGGCACGGGCATGGCGCACCCCGCTGTCCTCGA
ATCACTTAAGCCTCAGCACCTTTGCTAGCAGCAGGAGAAGAGCAGCAGCT
GCAGCAGCCACAACAACGACAATAACAACGTCCTCTACTTTCCGGCAAAT
GCATCCCTGGACGCGATGTTTCGCCGTCTTTCCGGACGACGACGAACTGC
GGAGTTCCAACGAGGGCCGGGGCAGTGGAGGTGGTGGAGGAGGTGGAGGG
CAAGGACCTGATGAGGAGCAACGCTCGGGGTCGGACATAGTTATGGTGGA
CATGACCGAGGTGCTTGAGGAAGATTTCTACCGCGCGGGCGGAGTGCGTC
TGTGGGAGGATGAGGTTTATGACGACGAAGATTTCTGACGCGCTCGGCCT
GGGCTCCCTCCTCCTCTTCCTCCTCCTCCTTCCCGCGGGCTTTATCCACG
GTCCAACGGACTCGGCGACCGTTAATTCCCGCCCAACGTTCAATACGCGC
ACCTACATCAACCCCGATCAGGACGGGAAGCCCCCCCGTGTGACGATCCA
GGCCTCGTACAGCGCCACGGACGATCTTGCGCCGGTCATCACCACTTTGT
GGAAAGGCATCGTGTTACTCGACAGAGAAGGCACGTCCAGGCGGGCGGCG
CAGAATACGATCCTGTCCGTAGGATGCCTTTCCCCCGCGCCTCCTTCATT
TCTCTCACCCTGAGGCTCACTCGCAAATATGCCCCCTTTAACTCTACCGC
ATCACACTCACATAAACAAGCCACATCGCCCTTTTTCGTCACAATGCCTC
GCCTCGTCCCGTGGAGCGGCACCCTTCTTCCTGTTCTGAGCGTCCTTGCT
GTGTTATTTTTTTCCTTGCCAGTGGCACGGGCATGGCGCACCCCGCTGTC
CTCGAATCACTTAAGCCTCAGCACCTTTGCTAGCAGCAGGAGAAGAGCAG
CAGCTGCAGCAGCCACAACAACGACAATAACAACGTCCTCTACTTTCCGG
CAAATGCATCCCTGGACGCGATGTTTCGCCGTCTTTCCGGACGACGACGA
ACTGCGGAGTTCCAACGAGGGCCGGGGCAGTGGAGGTGGTGGAGGAGGTG
GAGGGCAAGGACCTGATGAGGAGCAACGCTCGGGGTCGGACATAGTTATG
GTGGACATGACCGAGGTGCTTGAGGAAGATTTCTACCGCGCGGGCGGAGT
GCGTCTGTGGGAGGATGAGGTTTATGACGACGAAGATTTCTGACGCGCTC
GGCCTGGGCTCCCTCCTCCTCTTCCTCCTCCTCCTTCCCGCGGGCTTTAT
CCACGGTCCAACGGACTCGGCGACCGTTAATTCCCGCCCAACGTTCAATA
CGCGCACCTACATCAACCCCGATCAGGACGGGAAGCCCCCCCGTGTGACG
ATCCAGGCCTCGTACAGCGCCACGGACGATCTTGCGCCGGTCATCACCAC
TTTGTGGAAAGGCATCGTGTTACTCGACAGAGAAGGCACGTCCAGGCGGG
CGGCGCAGAATACGATCCTGTCCGTAGGATGCCTTTCCCCCGCGCCTCCT
TCATTTCTCTCACCCTGAGGCTCACTCGCAAATATGCCCCCTTTAACTCT
ACCGCATCACACTCACATAAACAAGCCACATCGCCCTTTTTCGTCACAAT
GCCTCGCCTCGTCCCGTGGAGCGGCACCCTTCTTCCTGTTCTGAGCGTCC
TTGCTGTGTTATTTTTTTCCTTGCCAGTGGCACGGGCATGGCGCACCCCG
CTGTCCTCGAATCACTTAAGCCTCAGCACCTTTGCTAGCAGCAGGAGAAG
AGCAGCAGCTGCAGCAGCCACAACAACGACAATAACAACGTCCTCTACTT
TCCGGCAAATGCATCCCTGGACGCGATGTTTCGCCGTCTTTCCGGACGAC
GACGAACTGCGGAGTTCCAACGAGGGCCGGGGCAGTGGAGGTGGTGGAGG
AGGTGGAGGGCAAGGACCTGATGAGGAGCAACGCTCGGGGTCGGACATAG
TTATGGTGGACATGACCGAG back to top
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