jgi.p|Nanoce1779_2|576031, mRNA_51 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|576031
Unique NamemRNA_51
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length631
Alignment locationscaffold_3:140708..141338 +

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Properties
Property NameValue
TranscriptId576117
TrackFilteredModels2
ProteinId576031
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:140708..141338 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576031gene_51Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576031mRNA_51-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_51CDS_51Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_51 ID=mRNA_51|Name=jgi.p|Nanoce1779_2|576031|organism=Nannochloropsis oceanica|type=mRNA|length=631bp
GCCCTCGCTCTTGTCTAAACATCAATTGGCTTTCCGTTGATGGTCGAGGC
CCTCCCGGCTCGCCTGTTCTTTTCTCTTCTTTCCTCCATCTCTCTCTCTC
TCTCTCTCTCTCTCTCCATCTCTCTCCATCTCTCTCTCCTTCTGTCTGTC
TTGGTTCTTGTCGCTCACTATCTACCACTCTCTCCCTGTTATATATGACA
CACATCTGACATACATAAACCGCTCTGTTGCCGACGAATAAATTATAAAT
ATTTGCTGTTTCTTCTCCCATGTCCTATTCGCGTCCCTTCTCTGCTCATT
GGATCCCCCGACTTACCCACTTCCCACTCAAAAATGATTCGGTCGCCATC
TTCTTTCTCTTCTCTTCTCTTCTTCATGTTTCTCTTCTCTTCCTTTCTCT
GTTTAGAGTGTCCTTTTTGCCGTTTTGTTAAGCGTATTACTCACTATTAC
TCTTCTGTTGTTTCTTGTCGTCTTCGTCGTCTTCTCATCTCTCACGCGCC
TTTCCCCCTTGATATTATGTGTATCAAATTCGACGACCAAATACAAAGAA
ACACCGACGCCAAAATGGCCATAGCCATAGCAATACTCTATGCCGTAACT
CGCTTTTAACACTTTCTCCCCCTCCTTTACC
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protein sequence of jgi.p|Nanoce1779_2|576031

>mRNA_51-protein ID=mRNA_51-protein|Name=jgi.p|Nanoce1779_2|576031|organism=Nannochloropsis oceanica|type=polypeptide|length=92bp
MIRSPSSFSSLLFFMFLFSSFLCLECPFCRFVKRITHYYSSVVSCRLRRL
LISHAPFPLDIMCIKFDDQIQRNTDAKMAIAIAILYAVTRF*
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mRNA from alignment at scaffold_3:140708..141338+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_51 ID=mRNA_51|Name=jgi.p|Nanoce1779_2|576031|organism=Nannochloropsis oceanica|type=mRNA|length=631bp|location=Sequence derived from alignment at scaffold_3:140708..141338+ (Nannochloropsis oceanica)
GCCCTCGCTCTTGTCTAAACATCAATTGGCTTTCCGTTGATGGTCGAGGC
CCTCCCGGCTCGCCTGTTCTTTTCTCTTCTTTCCTCCATCTCTCTCTCTC
TCTCTCTCTCTCTCTCCATCTCTCTCCATCTCTCTCTCCTTCTGTCTGTC
TTGGTTCTTGTCGCTCACTATCTACCACTCTCTCCCTGTTATATATGACA
CACATCTGACATACATAAACCGCTCTGTTGCCGACGAATAAATTATAAAT
ATTTGCTGTTTCTTCTCCCATGTCCTATTCGCGTCCCTTCTCTGCTCATT
GGATCCCCCGACTTACCCACTTCCCACTCAAAAATGATTCGGTCGCCATC
TTCTTTCTCTTCTCTTCTCTTCTTCATGTTTCTCTTCTCTTCCTTTCTCT
GTTTAGAGTGTCCTTTTTGCCGTTTTGTTAAGCGTATTACTCACTATTAC
TCTTCTGTTGTTTCTTGTCGTCTTCGTCGTCTTCTCATCTCTCACGCGCC
TTTCCCCCTTGATATTATGTGTATCAAATTCGACGACCAAATACAAAGAA
ACACCGACGCCAAAATGGCCATAGCCATAGCAATACTCTATGCCGTAACT
CGCTTTTAACACTTTCTCCCCCTCCTTTACC
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Coding sequence (CDS) from alignment at scaffold_3:140708..141338+

>mRNA_51 ID=mRNA_51|Name=jgi.p|Nanoce1779_2|576031|organism=Nannochloropsis oceanica|type=CDS|length=276bp|location=Sequence derived from alignment at scaffold_3:140708..141338+ (Nannochloropsis oceanica)
ATGATTCGGTCGCCATCTTCTTTCTCTTCTCTTCTCTTCTTCATGTTTCT
CTTCTCTTCCTTTCTCTGTTTAGAGTGTCCTTTTTGCCGTTTTGTTAAGC
GTATTACTCACTATTACTCTTCTGTTGTTTCTTGTCGTCTTCGTCGTCTT
CTCATCTCTCACGCGCCTTTCCCCCTTGATATTATGTGTATCAAATTCGA
CGACCAAATACAAAGAAACACCGACGCCAAAATGGCCATAGCCATAGCAA
TACTCTATGCCGTAACTCGCTTTTAA
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Synonyms
Publications