jgi.p|Nanoce1779_2|576554, mRNA_204 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576554
Unique Name	mRNA_204
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1962
Alignment location	scaffold_3:508358..510740 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	576640
Track	FilteredModels2
ProteinId	576554

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:508358..510740 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576554	gene_204	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576554	mRNA_204-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_204	CDS_204	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:508358..510740+
coding sequence from alignment at scaffold_3:508358..510740+

mRNA sequence

>mRNA_204 ID=mRNA_204|Name=jgi.p|Nanoce1779_2|576554|organism=Nannochloropsis oceanica|type=mRNA|length=1962bp
AGACTAGCTCTCTTTCCTCCGCCCTCAGCCCACAACCGCGCTCACCCAGG
ACCATGTCTCTGGCTCAGAACAAACCGCTGAAGGAACACGACCCCGTGCT
CTATGAGCTAATTCAAAAGGAGAAGAACCGCCAGCTCACCTCCTTAGAGC
TGATTGCCTCGGAAAACTTCACTTCCGGTGCCGTTATGGAATGCTTGGGC
TCCGTACTAACAAATAAGTATGCCGAAGGTCTTCCCGGCGCCCGCTACTA
CGGCGGCAATGAAGTGGTGGACCAAGTCGAGAACTTGTGCCGCGACCGGG
CCCTGCAGGCTTACCGGTTGGATCCGGAGAAGTGGGGCGTGAACGTCCAG
CCCTATTCCGGCAGCCCGGCCAACTTTGCGGTATACACGGCGTTGCTTCG
CCCGCACGACCGTATCATGGGCTTGGACTTGCCCAGTGGAGGGCACTTGA
CCCACGGTTTCTACACCTACAACAAGGCGGAGGGTACCCGTAAGGCTGTG
TCCGCCACGAGCATCTACTTCGAGTCTCTCCCTTACCGCGTGCACCCTGA
TACGGGCCTGATCGACTACGACCAGATGGAGACGAACGCCGCGCTGTTCA
AGCCCGCTATGATAATTTCCGGTGGCTCGGCCTACCCCCGTGAGTGGGAC
TATGCTCGTATCCGCTCTATTGCCGATGCCAACGGCTCACTCATGATGGT
GGACATGGCGCATATCTCGGGCCTGGTCGCCACGCAAGAGGCGGCGGACC
CCTTCGAGTTCGCAGACGTGGTCACCACAACCACTCACAAGTCCCTTCGT
GGGCCCCGAGCTGGCCTCATCTTTTTCCGCAAAGATGACCGTAACTTTGA
AGGCCGCATCAATCAGGCTGTCTTCCCGGCTCTGCAGGGCGGGCCTCACG
AACACCAGATTGCTGGTGTTGCCACGCAACTGAAGGAGGTCATGTCACCC
GAGTTCAAGGAATACGCAATCCAGGTAAAGAAGAACGCGCAGGCCATCGC
CAAGGCTCTGACTGCTAAGGGTTACAAGATGGCGACCGGCGGCACGGTCA
ATCACTTGGTGCTGTGGGATTTGCGTCCTCAGGCTCTAACGGGGAGCAAG
ATGGAGAGGCTCTGCGATGTCCTCAACATCACCCTGAACAAGAACGCTGT
CGTCGGCGACCGTAGCGCCTTGACTCCCGGCGGGGTGCGCATCGGTGCAC
CGGCCTTGACAAGTCGTGGATTCAAGGAGGCGGATTTCGAAAAGGTTGCT
GACTTTTTGGACCAGGCGGTGAAGATCGGGTTGAGGATCCAAGCTGCCTC
TGGGCCGAAGCTGGTGGATTTCACCCAGGCTCTAGGGGAGGATGAAGAGG
TCAAGTCGTTGAAGTTGCAGGTGAATGAGTTTGCCAAGGGCTTTCCCATG
CCGGGATTGGTCTAACGAGTGAGACTCAAAAAAGGTCAGATGGTCGGGAG
TGAATATGAGGAGAGTTATCTCTGAGGTCTTCATTATCTGAAACAATATA
TCTGTGTAAGAATAGAGTGCTGCGTGTGAATCGAGCTGCACGGTAGAAAA
AGGCTACTTCATTAAGGTTGCGGCTGGCGTATCCTTGTTTTTGCGCGTTG
CAATCCACGGGAAGACGGCAAACACGCAGACACTCAAGACGTCAAAGAAG
GAAGAGATCACCTGTAGGAGGACCGAGGCAGATGTAGACGGGGGAAGAAA
TGTAGTAGTTAGGTTTTGTGTATCTACCATACTCATTTTTTCGAGAGGAG
AGACCTTTCGCTTAAATTTAAGCAAGAGATCGGAAGCAAGAACAGAAAGA
AAGATTATACGATGGCTCTGCCTCCGGACTTTCGTAAGACGTTATCCATT
TGTATGCTGGCCGGCTGAGGCGGCAGCGGGGTAGTTAGTTTTTGTATGTG
CGGGGTATATAAGATGCTCATTTTAAAAAAAAGCAAAAAAAAAAGCAGAT
GCAATCGGGCAA

protein sequence of jgi.p|Nanoce1779_2|576554

>mRNA_204-protein ID=mRNA_204-protein|Name=jgi.p|Nanoce1779_2|576554|organism=Nannochloropsis oceanica|type=polypeptide|length=454bp
MSLAQNKPLKEHDPVLYELIQKEKNRQLTSLELIASENFTSGAVMECLGS
VLTNKYAEGLPGARYYGGNEVVDQVENLCRDRALQAYRLDPEKWGVNVQP
YSGSPANFAVYTALLRPHDRIMGLDLPSGGHLTHGFYTYNKAEGTRKAVS
ATSIYFESLPYRVHPDTGLIDYDQMETNAALFKPAMIISGGSAYPREWDY
ARIRSIADANGSLMMVDMAHISGLVATQEAADPFEFADVVTTTTHKSLRG
PRAGLIFFRKDDRNFEGRINQAVFPALQGGPHEHQIAGVATQLKEVMSPE
FKEYAIQVKKNAQAIAKALTAKGYKMATGGTVNHLVLWDLRPQALTGSKM
ERLCDVLNITLNKNAVVGDRSALTPGGVRIGAPALTSRGFKEADFEKVAD
FLDQAVKIGLRIQAASGPKLVDFTQALGEDEEVKSLKLQVNEFAKGFPMP
GLV*

mRNA from alignment at scaffold_3:508358..510740+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_204 ID=mRNA_204|Name=jgi.p|Nanoce1779_2|576554|organism=Nannochloropsis oceanica|type=mRNA|length=2383bp|location=Sequence derived from alignment at scaffold_3:508358..510740+ (Nannochloropsis oceanica)
AGACTAGCTCTCTTTCCTCCGCCCTCAGCCCACAACCGCGCTCACCCAGG
ACCATGTCTCTGGCTCAGAACAAACCGCTGAAGGAACACGACCCCGTGCT
CTATGAGCTAATTCAAAAGGTAAGGAAGGGAGTAAGTGAAGGAGGAGAGG
GTATGTGGCCCCAGGTCGCGTGTGATGAGTGCTTGGAGCTTCTTACGGCA
GCTTGGTTGGCTGCACAGTCGCTTCGCCCTTTGGAAGACAGCATGTGGGT
CTGTGTCTGCATGTGCTTGACTCATGAAGTATTTATCTTCCCTCCGTGGT
GATGAACAGCGTAACTCATTCTATCCCTTCCCTTTTTTCTCTCCTTGCCC
GCACACAGGAGAAGAACCGCCAGCTCACCTCCTTAGAGCTGATTGCCTCG
GAAAACTTCACTTCCGGTGCCGTTATGGAATGCTTGGGCTCCGTACTAAC
AAATAAGGTGAGAAGGAGGGATATAGTGAGAGACTATTCTGTGGTATGTC
GTCCAGCTGCTTGACACGGTGTTCCTCTTAATTTGCCGCCACATCAACTA
AATGCGGTCCCTGTCTCCCGACGCCTCACCGCTTCACGATCTTTCTTTAA
TTTAATCCCTCTCACCCTTCCTTCCATCCTTTCCTGTAGTATGCCGAAGG
TCTTCCCGGCGCCCGCTACTACGGCGGCAATGAAGTGGTGGACCAAGTCG
AGAACTTGTGCCGCGACCGGGCCCTGCAGGCTTACCGGTTGGATCCGGAG
AAGTGGGGCGTGAACGTCCAGCCCTATTCCGGCAGCCCGGCCAACTTTGC
GGTATACACGGCGTTGCTTCGCCCGCACGACCGTATCATGGGCTTGGACT
TGCCCAGTGGAGGGCACTTGACCCACGGTTTCTACACCTACAACAAGGCG
GAGGGTACCCGTAAGGCTGTGTCCGCCACGAGCATCTACTTCGAGTCTCT
CCCTTACCGCGTGCACCCTGATACGGGCCTGATCGACTACGACCAGATGG
AGACGAACGCCGCGCTGTTCAAGCCCGCTATGATAATTTCCGGTGGCTCG
GCCTACCCCCGTGAGTGGGACTATGCTCGTATCCGCTCTATTGCCGATGC
CAACGGCTCACTCATGATGGTGGACATGGCGCATATCTCGGGCCTGGTCG
CCACGCAAGAGGCGGCGGACCCCTTCGAGTTCGCAGACGTGGTCACCACA
ACCACTCACAAGTCCCTTCGTGGGCCCCGAGCTGGCCTCATCTTTTTCCG
CAAAGATGACCGTAACTTTGAAGGCCGCATCAATCAGGCTGTCTTCCCGG
CTCTGCAGGGCGGGCCTCACGAACACCAGATTGCTGGTGTTGCCACGCAA
CTGAAGGAGGTCATGTCACCCGAGTTCAAGGAATACGCAATCCAGGTAAA
GAAGAACGCGCAGGCCATCGCCAAGGCTCTGACTGCTAAGGGTTACAAGA
TGGCGACCGGCGGCACGGTCAATCACTTGGTGCTGTGGGATTTGCGTCCT
CAGGCTCTAACGGGGAGCAAGATGGAGAGGCTCTGCGATGTCCTCAACAT
CACCCTGAACAAGAACGCTGTCGTCGGCGACCGTAGCGCCTTGACTCCCG
GCGGGGTGCGCATCGGTGCACCGGCCTTGACAAGTCGTGGATTCAAGGAG
GCGGATTTCGAAAAGGTTGCTGACTTTTTGGACCAGGCGGTGAAGATCGG
GTTGAGGATCCAAGCTGCCTCTGGGCCGAAGCTGGTGGATTTCACCCAGG
CTCTAGGGGAGGATGAAGAGGTCAAGTCGTTGAAGTTGCAGGTGAATGAG
TTTGCCAAGGGCTTTCCCATGCCGGGATTGGTCTAACGAGTGAGACTCAA
AAAAGGTCAGATGGTCGGGAGTGAATATGAGGAGAGTTATCTCTGAGGTC
TTCATTATCTGAAACAATATATCTGTGTAAGAATAGAGTGCTGCGTGTGA
ATCGAGCTGCACGGTAGAAAAAGGCTACTTCATTAAGGTTGCGGCTGGCG
TATCCTTGTTTTTGCGCGTTGCAATCCACGGGAAGACGGCAAACACGCAG
ACACTCAAGACGTCAAAGAAGGAAGAGATCACCTGTAGGAGGACCGAGGC
AGATGTAGACGGGGGAAGAAATGTAGTAGTTAGGTTTTGTGTATCTACCA
TACTCATTTTTTCGAGAGGAGAGACCTTTCGCTTAAATTTAAGCAAGAGA
TCGGAAGCAAGAACAGAAAGAAAGATTATACGATGGCTCTGCCTCCGGAC
TTTCGTAAGACGTTATCCATTTGTATGCTGGCCGGCTGAGGCGGCAGCGG
GGTAGTTAGTTTTTGTATGTGCGGGGTATATAAGATGCTCATTTTAAAAA
AAAGCAAAAAAAAAAGCAGATGCAATCGGGCAA

Coding sequence (CDS) from alignment at scaffold_3:508358..510740+

>mRNA_204 ID=mRNA_204|Name=jgi.p|Nanoce1779_2|576554|organism=Nannochloropsis oceanica|type=CDS|length=4086bp|location=Sequence derived from alignment at scaffold_3:508358..510740+ (Nannochloropsis oceanica)
ATGTCTCTGGCTCAGAACAAACCGCTGAAGGAACACGACCCCGTGCTCTA
TGAGCTAATTCAAAAGGAGAAGAACCGCCAGCTCACCTCCTTAGAGCTGA
TTGCCTCGGAAAACTTCACTTCCGGTGCCGTTATGGAATGCTTGGGCTCC
GTACTAACAAATAAGTATGCCGAAGGTCTTCCCGGCGCCCGCTACTACGG
CGGCAATGAAGTGGTGGACCAAGTCGAGAACTTGTGCCGCGACCGGGCCC
TGCAGGCTTACCGGTTGGATCCGGAGAAGTGGGGCGTGAACGTCCAGCCC
TATTCCGGCAGCCCGGCCAACTTTGCGGTATACACGGCGTTGCTTCGCCC
GCACGACCGTATCATGGGCTTGGACTTGCCCAGTGGAGGGCACTTGACCC
ACGGTTTCTACACCTACAACAAGGCGGAGGGTACCCGTAAGGCTGTGTCC
GCCACGAGCATCTACTTCGAGTCTCTCCCTTACCGCGTGCACCCTGATAC
GGGCCTGATCGACTACGACCAGATGGAGACGAACGCCGCGCTGTTCAAGC
CCGCTATGATAATTTCCGGTGGCTCGGCCTACCCCCGTGAGTGGGACTAT
GCTCGTATCCGCTCTATTGCCGATGCCAACGGCTCACTCATGATGGTGGA
CATGGCGCATATCTCGGGCCTGGTCGCCACGCAAGAGGCGGCGGACCCCT
TCGAGTTCGCAGACGTGGTCACCACAACCACTCACAAGTCCCTTCGTGGG
CCCCGAGCTGGCCTCATCTTTTTCCGCAAAGATGACCGTAACTTTGAAGG
CCGCATCAATCAGGCTGTCTTCCCGGCTCTGCAGGGCGGGCCTCACGAAC
ACCAGATTGCTGGTGTTGCCACGCAACTGAAGGAGGTCATGTCACCCGAG
TTCAAGGAATACGCAATCCAGGTAAAGAAGAACGCGCAGGCCATCGCCAA
GGCTCTGACTGCTAAGGGTTACAAGATGGCGACCGGCGGCACGGTCAATC
ACTTGGTGCTGTGGGATTTGCGTCCTCAGGCTCTAACGGGGAGCAAGATG
GAGAGGCTCTGCGATGTCCTCAACATCACCCTGAACAAGAACGCTGTCGT
CGGCGACCGTAGCGCCTTGACTCCCGGCGGGGTGCGCATCGGTGCACCGG
CCTTGACAAGTCGTGGATTCAAGGAGGCGGATTTCGAAAAGGTTGCTGAC
TTTTTGGACCAGGCGGTGAAGATCGGGTTGAGGATCCAAGCTGCCTCTGG
GCCGAAGCTGGTGGATTTCACCCAGGCTCTAGGGGAGGATGAAGAGGTCA
AGTCGTTGAAGTTGCAGGTGAATGAGTTTGCCAAGGGCTTTCCCATGCCG
GGATTGGTCTAAATGTCTCTGGCTCAGAACAAACCGCTGAAGGAACACGA
CCCCGTGCTCTATGAGCTAATTCAAAAGGAGAAGAACCGCCAGCTCACCT
CCTTAGAGCTGATTGCCTCGGAAAACTTCACTTCCGGTGCCGTTATGGAA
TGCTTGGGCTCCGTACTAACAAATAAGTATGCCGAAGGTCTTCCCGGCGC
CCGCTACTACGGCGGCAATGAAGTGGTGGACCAAGTCGAGAACTTGTGCC
GCGACCGGGCCCTGCAGGCTTACCGGTTGGATCCGGAGAAGTGGGGCGTG
AACGTCCAGCCCTATTCCGGCAGCCCGGCCAACTTTGCGGTATACACGGC
GTTGCTTCGCCCGCACGACCGTATCATGGGCTTGGACTTGCCCAGTGGAG
GGCACTTGACCCACGGTTTCTACACCTACAACAAGGCGGAGGGTACCCGT
AAGGCTGTGTCCGCCACGAGCATCTACTTCGAGTCTCTCCCTTACCGCGT
GCACCCTGATACGGGCCTGATCGACTACGACCAGATGGAGACGAACGCCG
CGCTGTTCAAGCCCGCTATGATAATTTCCGGTGGCTCGGCCTACCCCCGT
GAGTGGGACTATGCTCGTATCCGCTCTATTGCCGATGCCAACGGCTCACT
CATGATGGTGGACATGGCGCATATCTCGGGCCTGGTCGCCACGCAAGAGG
CGGCGGACCCCTTCGAGTTCGCAGACGTGGTCACCACAACCACTCACAAG
TCCCTTCGTGGGCCCCGAGCTGGCCTCATCTTTTTCCGCAAAGATGACCG
TAACTTTGAAGGCCGCATCAATCAGGCTGTCTTCCCGGCTCTGCAGGGCG
GGCCTCACGAACACCAGATTGCTGGTGTTGCCACGCAACTGAAGGAGGTC
ATGTCACCCGAGTTCAAGGAATACGCAATCCAGGTAAAGAAGAACGCGCA
GGCCATCGCCAAGGCTCTGACTGCTAAGGGTTACAAGATGGCGACCGGCG
GCACGGTCAATCACTTGGTGCTGTGGGATTTGCGTCCTCAGGCTCTAACG
GGGAGCAAGATGGAGAGGCTCTGCGATGTCCTCAACATCACCCTGAACAA
GAACGCTGTCGTCGGCGACCGTAGCGCCTTGACTCCCGGCGGGGTGCGCA
TCGGTGCACCGGCCTTGACAAGTCGTGGATTCAAGGAGGCGGATTTCGAA
AAGGTTGCTGACTTTTTGGACCAGGCGGTGAAGATCGGGTTGAGGATCCA
AGCTGCCTCTGGGCCGAAGCTGGTGGATTTCACCCAGGCTCTAGGGGAGG
ATGAAGAGGTCAAGTCGTTGAAGTTGCAGGTGAATGAGTTTGCCAAGGGC
TTTCCCATGCCGGGATTGGTCTAAATGTCTCTGGCTCAGAACAAACCGCT
GAAGGAACACGACCCCGTGCTCTATGAGCTAATTCAAAAGGAGAAGAACC
GCCAGCTCACCTCCTTAGAGCTGATTGCCTCGGAAAACTTCACTTCCGGT
GCCGTTATGGAATGCTTGGGCTCCGTACTAACAAATAAGTATGCCGAAGG
TCTTCCCGGCGCCCGCTACTACGGCGGCAATGAAGTGGTGGACCAAGTCG
AGAACTTGTGCCGCGACCGGGCCCTGCAGGCTTACCGGTTGGATCCGGAG
AAGTGGGGCGTGAACGTCCAGCCCTATTCCGGCAGCCCGGCCAACTTTGC
GGTATACACGGCGTTGCTTCGCCCGCACGACCGTATCATGGGCTTGGACT
TGCCCAGTGGAGGGCACTTGACCCACGGTTTCTACACCTACAACAAGGCG
GAGGGTACCCGTAAGGCTGTGTCCGCCACGAGCATCTACTTCGAGTCTCT
CCCTTACCGCGTGCACCCTGATACGGGCCTGATCGACTACGACCAGATGG
AGACGAACGCCGCGCTGTTCAAGCCCGCTATGATAATTTCCGGTGGCTCG
GCCTACCCCCGTGAGTGGGACTATGCTCGTATCCGCTCTATTGCCGATGC
CAACGGCTCACTCATGATGGTGGACATGGCGCATATCTCGGGCCTGGTCG
CCACGCAAGAGGCGGCGGACCCCTTCGAGTTCGCAGACGTGGTCACCACA
ACCACTCACAAGTCCCTTCGTGGGCCCCGAGCTGGCCTCATCTTTTTCCG
CAAAGATGACCGTAACTTTGAAGGCCGCATCAATCAGGCTGTCTTCCCGG
CTCTGCAGGGCGGGCCTCACGAACACCAGATTGCTGGTGTTGCCACGCAA
CTGAAGGAGGTCATGTCACCCGAGTTCAAGGAATACGCAATCCAGGTAAA
GAAGAACGCGCAGGCCATCGCCAAGGCTCTGACTGCTAAGGGTTACAAGA
TGGCGACCGGCGGCACGGTCAATCACTTGGTGCTGTGGGATTTGCGTCCT
CAGGCTCTAACGGGGAGCAAGATGGAGAGGCTCTGCGATGTCCTCAACAT
CACCCTGAACAAGAACGCTGTCGTCGGCGACCGTAGCGCCTTGACTCCCG
GCGGGGTGCGCATCGGTGCACCGGCCTTGACAAGTCGTGGATTCAAGGAG
GCGGATTTCGAAAAGGTTGCTGACTTTTTGGACCAGGCGGTGAAGATCGG
GTTGAGGATCCAAGCTGCCTCTGGGCCGAAGCTGGTGGATTTCACCCAGG
CTCTAGGGGAGGATGAAGAGGTCAAGTCGTTGAAGTTGCAGGTGAATGAG
TTTGCCAAGGGCTTTCCCATGCCGGGATTGGTCTAA

Synonyms

Publications