|
Properties
Property Name | Value |
TranscriptId | 577175 |
Track | FilteredModels2 |
ProteinId | 577089 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_3 | supercontig | scaffold_3:870379..872773 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_353 ID=mRNA_353|Name=jgi.p|Nanoce1779_2|577089|organism=Nannochloropsis oceanica|type=mRNA|length=2008bp TGGATGACCGCTTGGACACACCCCACAGGTTCCAAGCAAAGGCAACTTGC TTTCTTGCTGTTGTGTGTGTCCCCTTTACAGGCCTGATTTCTTACCCACC ACTGTTCATATAGTACTGCGAAGCACAGGTGACGGCAAGCGTCACGCACC TGCTAGCACCCGCGTCATGGACACGAGCTGCCCCCCTCAAAGAAAAAGGC CTCGGCCGGCGCAGCCTCTCCTCTGCACTTCACTCCGGCGCCTCGTGTTT GTTGCTGCCGCGGCTGCGGCCGCCACTGCGGCCACGACAGCACACGCTTT CGTCGTGCCAAGCAGCAGAGGCATTAATGGTGCCGCCATTTGGCGTGGGC GCACGGTGTACATGGGCAAGGGCAGTGGTGGGGGCGGAGGAAGCAAGAAA AAGGGGTCCGCGCTGCTGCAAGAGGTCCTCGAACGCTACGAAGCTGTCGT CGGCATCGAAGTTCATGCGCAGCTCCTCTCGGACACCAAAGCCTACTGCA GTTGCTCCACTCATTACAATCCCAACGTGCCCAACGCCAACATCTGCCCA GTCTGCACGGGCGAGCCCGGCACGTTGCCGGTGCCCAACGCCCGTGTAGT CGAATTAGCCAGCAAGGCCGCTCTGGCCCTTCAATGCGAAATAGCTGCAG AAGTCCGTTATGACCGCAAAAATTATTTCTACCCCGATACGCCCAAAAAC TACCAAATCACACAATACACTCACCCACTGGGTGGGAAAGGTTTGCTGGA GCTCCCAAGTGGGAAAATGGTGGCCATCACCCGTTTACACATTGAAGAAG ACTCGGCAAAGATGGTCCATCAAGGGTCGGACTCCTTGGCGGGCTCGACA CATTCCCTTGTCGATTTTAATAGGGCCGGGATTCCTCTAGCGGAGATCGT GTCTGAGCCAGACATGCGTTCAGGGGCGGAAGCAGCCGAGTATGGGAGGG AGTTGCAGAAGGTCCTGCGATACGTAGGAGTAAGTGATGGGAACATGGCT GAGGGCTCGATGCGCCTTGACGTGAATGTGTCGATTCGACCCAAGGGGGA AAAGGCCCTGAGGGCTAAGGTGGAGGTGAAGAATGTGAACTCGTTCAAGT CCGTGCAGCAAGCGGTGGACTTCGAAGTGTTGCGGCAGGCCAAAGCCTAC GATGCTGCAGAGCCCGTGAGGCAGGAAACGCGCATGTGGGACGAGAAAGA GCTATCGACCAAGCTCATGCGAGTTAAAGAAGGCGAATCCGACTATCGCT ACTTTCCCGAACCGGACGTCCCCCCTCTCACCCTCCCCCCCGCCCTCGTC GCGGCCTGGAAGAGCGAATTGCAGGAGCTGCCGGCGAAGAAGCGTGCGCG GTACCAGGATTCAGCGGGTTTTGGGTTGGATGCAGAAACGACCAAGGCGT TAACGGAAGATTTGAACGTGGCGCAATTTTACGAAAAAGCCGTTGAGGTC CACAAGGCAGACGCCAAGGAAGCAGCCAAATGGTTGATAGGTGATATTTT CGGGCACTTGAATGGAAATAAAGGGAAGGTTAAGGACTTTGGCAAGATTA AGTTGACCCCTGCGGGCCTGGCAGAGCTGGTCGGGCTGATCGCTGAAGGG AAGATTACCGGGAAGATAGCTAAGGAGCTCCTGCCGGAGTTGTTGGATGA GTGGGTTGGGGAGGAAGGAAAGGAGGGGGAGGGGGAGGCAGGGGCGGTGT TGGCCTTGGTGAAGGAGAGGGGGATGGAGGCCATTACGGACCCAGCGGCG ATTGCGCTGTTGGTTGAAAAGGTGATGCAGGCGAATCCAGGGAAGGTCGC TGATTATAGGGCCGGGAAGACCAAGATGCTAGGTTTTTTTGTGGGGATGG TGTTGAAGGAGAGTGGGAGTAGAGCTGATCCGGAGGTGGCACAGAGGTTG ACGGAAGCAGCGTTGAAGGACGGGATATAGGGGGGTTGGGGAGGGAGGGA GGGAGGGATAGGTATGTACACATGGGATGTGTGTGAACGGTGGCGGGTAG GATAGATA back to topprotein sequence of jgi.p|Nanoce1779_2|577089 >mRNA_353-protein ID=mRNA_353-protein|Name=jgi.p|Nanoce1779_2|577089|organism=Nannochloropsis oceanica|type=polypeptide|length=588bp MDTSCPPQRKRPRPAQPLLCTSLRRLVFVAAAAAAATAATTAHAFVVPSS RGINGAAIWRGRTVYMGKGSGGGGGSKKKGSALLQEVLERYEAVVGIEVH AQLLSDTKAYCSCSTHYNPNVPNANICPVCTGEPGTLPVPNARVVELASK AALALQCEIAAEVRYDRKNYFYPDTPKNYQITQYTHPLGGKGLLELPSGK MVAITRLHIEEDSAKMVHQGSDSLAGSTHSLVDFNRAGIPLAEIVSEPDM RSGAEAAEYGRELQKVLRYVGVSDGNMAEGSMRLDVNVSIRPKGEKALRA KVEVKNVNSFKSVQQAVDFEVLRQAKAYDAAEPVRQETRMWDEKELSTKL MRVKEGESDYRYFPEPDVPPLTLPPALVAAWKSELQELPAKKRARYQDSA GFGLDAETTKALTEDLNVAQFYEKAVEVHKADAKEAAKWLIGDIFGHLNG NKGKVKDFGKIKLTPAGLAELVGLIAEGKITGKIAKELLPELLDEWVGEE GKEGEGEAGAVLALVKERGMEAITDPAAIALLVEKVMQANPGKVADYRAG KTKMLGFFVGMVLKESGSRADPEVAQRLTEAALKDGI* back to topmRNA from alignment at scaffold_3:870379..872773- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_353 ID=mRNA_353|Name=jgi.p|Nanoce1779_2|577089|organism=Nannochloropsis oceanica|type=mRNA|length=2395bp|location=Sequence derived from alignment at scaffold_3:870379..872773- (Nannochloropsis oceanica) TGGATGACCGCTTGGACACACCCCACAGGTTCCAAGCAAAGGCAACTTGC
TTTCTTGCTGTTGTGTGTGTCCCCTTTACAGGCCTGATTTCTTACCCACC
ACTGTTCATATAGTACTGCGAAGCACAGGTGACGGCAAGCGTCACGCACC
TGCTAGCACCCGCGTCATGGACACGAGCTGCCCCCCTCAAAGAAAAAGGC
CTCGGCCGGCGCAGCCTCTCCTCTGCACTTCACTCCGGCGCCTCGTGTTT
GTTGCTGCCGCGGCTGCGGCCGCCACTGCGGCCACGACAGCACACGCTTT
CGTCGTGCCAAGCAGCAGAGGCATTAATGGTGCCGCCATTTGGCGTGGGC
GCACGGTGTACATGGGCAAGGGCAGTGGTGGGGGCGGAGGAAGCAAGAAA
AAGGGGTCCGCGCTGCTGCAAGAGGTGCGTAGCACGCGCGTGCGTGTGTG
AGTGTGTGTTTGAGGGCACCTAGCATGTGCTCCTTCTCCCCCTCTCTATT
TCTTTCCTCGAAAACAACGTTGATAGTGCAGCACTGTCTGCCTCCGCGTT
CGTGTGAGTGAGTGACCAACCCCTTACTGGAACTCACAACCTCCTCCCCC
TCCCTCCATCCCTCTTCCCGCCATACCCTCTCACCAGGTCCTCGAACGCT
ACGAAGCTGTCGTCGGCATCGAAGTTCATGCGCAGCTCCTCTCGGACACC
AAAGCCTACTGCAGTTGCTCCACTCATTACAATCCCAACGTGCCCAACGC
CAACATCTGCCCAGTCTGCACGGGCGAGCCCGGCACGTTGCCGGTGCCCA
ACGCCCGTGTAGTCGAATTAGCCAGCAAGGCCGCTCTGGCCCTTCAATGC
GAAATAGCTGCAGAAGTCCGTTATGACCGCAAAAATTATTTCTACCCCGA
TACGCCCAAAAACTACCAAATCACACAATACACTCACCCACTGGGTGGGA
AAGGTTTGCTGGAGCTCCCAAGTGGGAAAATGGTGGCCATCACCCGTTTA
CACATTGAAGAAGACTCGGCAAAGATGGTCCATCAAGGGTCGGACTCCTT
GGCGGGCTCGACACATTCCCTTGTCGATTTTAATAGGGCCGGGATTCCTC
TAGCGGAGATCGTGTCTGAGCCAGACATGCGTTCAGGGGCGGAAGCAGCC
GAGTATGGGAGGGAGTTGCAGAAGGTCCTGCGATACGTAGGAGTAAGTGA
TGGGAACATGGCTGAGGGCTCGATGCGCCTTGACGTGAATGTGTCGATTC
GACCCAAGGGGGAAAAGGCCCTGAGGGCTAAGGTGGAGGTGAAGAATGTG
AACTCGTTCAAGTCCGTGCAGCAAGCGGTGGACTTCGAAGTGTTGCGGCA
GGCCAAAGCCTACGATGCTGCAGAGCCCGTGAGGCAGGAAACGCGCATGT
GGGACGAGAAAGAGCTATCGACCAAGCTCATGCGAGTTAAAGAAGGCGAA
TCCGACTATCGCTACTTTCCCGAACCGGACGTCCCCCCTCTCACCCTCCC
CCCCGCCCTCGTCGCGGCCTGGAAGAGCGAATTGCAGGAGCTGCCGGCGA
AGAAGCGTGCGCGGTACCAGGATTCAGCGGGTTTTGGGTTGGATGCAGGT
GCGAAGGGGAAGAAGGGAGAAAGGGAGGGAGGGAGGGACGGAGAAAGGAA
GGGAAGATGGATGGGTGGAAAGGCCGTCGAAAGGAAATTTCATCATCGTT
TTATTTTTTTGTCGTAGTCACTCAGTTACTCCCTCCTTCCCTCCCTCTCG
CCCACTATTCCGGTTCTCACAGAAACGACCAAGGCGTTAACGGAAGATTT
GAACGTGGCGCAATTTTACGAAAAAGCCGTTGAGGTCCACAAGGCAGACG
CCAAGGAAGCAGCCAAATGGTTGATAGGTGATATTTTCGGGCACTTGAAT
GGAAATAAAGGGAAGGTTAAGGACTTTGGCAAGATTAAGTTGACCCCTGC
GGGCCTGGCAGAGCTGGTCGGGCTGATCGCTGAAGGGAAGATTACCGGGA
AGATAGCTAAGGAGCTCCTGCCGGAGTTGTTGGATGAGTGGGTTGGGGAG
GAAGGAAAGGAGGGGGAGGGGGAGGCAGGGGCGGTGTTGGCCTTGGTGAA
GGAGAGGGGGATGGAGGCCATTACGGACCCAGCGGCGATTGCGCTGTTGG
TTGAAAAGGTGATGCAGGCGAATCCAGGGAAGGTCGCTGATTATAGGGCC
GGGAAGACCAAGATGCTAGGTTTTTTTGTGGGGATGGTGTTGAAGGAGAG
TGGGAGTAGAGCTGATCCGGAGGTGGCACAGAGGTTGACGGAAGCAGCGT
TGAAGGACGGGATATAGGGGGGTTGGGGAGGGAGGGAGGGAGGGATAGGT
ATGTACACATGGGATGTGTGTGAACGGTGGCGGGTAGGATAGATA back to topCoding sequence (CDS) from alignment at scaffold_3:870379..872773- >mRNA_353 ID=mRNA_353|Name=jgi.p|Nanoce1779_2|577089|organism=Nannochloropsis oceanica|type=CDS|length=5292bp|location=Sequence derived from alignment at scaffold_3:870379..872773- (Nannochloropsis oceanica) AAACGACCAAGGCGTTAACGGAAGATTTGAACGTGGCGCAATTTTACGAA AAAGCCGTTGAGGTCCACAAGGCAGACGCCAAGGAAGCAGCCAAATGGTT GATAGGTGATATTTTCGGGCACTTGAATGGAAATAAAGGGAAGGTTAAGG ACTTTGGCAAGATTAAGTTGACCCCTGCGGGCCTGGCAGAGCTGGTCGGG CTGATCGCTGAAGGGAAGATTACCGGGAAGATAGCTAAGGAGCTCCTGCC GGAGTTGTTGGATGAGTGGGTTGGGGAGGAAGGAAAGGAGGGGGAGGGGG AGGCAGGGGCGGTGTTGGCCTTGGTGAAGGAGAGGGGGATGGAGGCCATT ACGGACCCAGCGGCGATTGCGCTGTTGGTTGAAAAGGTGATGCAGGCGAA TCCAGGGAAGGTCGCTGATTATAGGGCCGGGAAGACCAAGATGCTAGGTT TTTTTGTGGGGATGGTGTTGAAGGAGAGTGGGAGTAGAGCTGATCCGGAG GTGGCACAGAGGTTGACGGAAGCAGCGTTGAAGGACGGGATATAGGTCCT CGAACGCTACGAAGCTGTCGTCGGCATCGAAGTTCATGCGCAGCTCCTCT CGGACACCAAAGCCTACTGCAGTTGCTCCACTCATTACAATCCCAACGTG CCCAACGCCAACATCTGCCCAGTCTGCACGGGCGAGCCCGGCACGTTGCC GGTGCCCAACGCCCGTGTAGTCGAATTAGCCAGCAAGGCCGCTCTGGCCC TTCAATGCGAAATAGCTGCAGAAGTCCGTTATGACCGCAAAAATTATTTC TACCCCGATACGCCCAAAAACTACCAAATCACACAATACACTCACCCACT GGGTGGGAAAGGTTTGCTGGAGCTCCCAAGTGGGAAAATGGTGGCCATCA CCCGTTTACACATTGAAGAAGACTCGGCAAAGATGGTCCATCAAGGGTCG GACTCCTTGGCGGGCTCGACACATTCCCTTGTCGATTTTAATAGGGCCGG GATTCCTCTAGCGGAGATCGTGTCTGAGCCAGACATGCGTTCAGGGGCGG AAGCAGCCGAGTATGGGAGGGAGTTGCAGAAGGTCCTGCGATACGTAGGA GTAAGTGATGGGAACATGGCTGAGGGCTCGATGCGCCTTGACGTGAATGT GTCGATTCGACCCAAGGGGGAAAAGGCCCTGAGGGCTAAGGTGGAGGTGA AGAATGTGAACTCGTTCAAGTCCGTGCAGCAAGCGGTGGACTTCGAAGTG TTGCGGCAGGCCAAAGCCTACGATGCTGCAGAGCCCGTGAGGCAGGAAAC GCGCATGTGGGACGAGAAAGAGCTATCGACCAAGCTCATGCGAGTTAAAG AAGGCGAATCCGACTATCGCTACTTTCCCGAACCGGACGTCCCCCCTCTC ACCCTCCCCCCCGCCCTCGTCGCGGCCTGGAAGAGCGAATTGCAGGAGCT GCCGGCGAAGAAGCGTGCGCGGTACCAGGATTCAGCGGGTTTTGGGTTGG ATGCAGATGGACACGAGCTGCCCCCCTCAAAGAAAAAGGCCTCGGCCGGC GCAGCCTCTCCTCTGCACTTCACTCCGGCGCCTCGTGTTTGTTGCTGCCG CGGCTGCGGCCGCCACTGCGGCCACGACAGCACACGCTTTCGTCGTGCCA AGCAGCAGAGGCATTAATGGTGCCGCCATTTGGCGTGGGCGCACGGTGTA CATGGGCAAGGGCAGTGGTGGGGGCGGAGGAAGCAAGAAAAAGGGGTCCG CGCTGCTGCAAGAGAAACGACCAAGGCGTTAACGGAAGATTTGAACGTGG CGCAATTTTACGAAAAAGCCGTTGAGGTCCACAAGGCAGACGCCAAGGAA GCAGCCAAATGGTTGATAGGTGATATTTTCGGGCACTTGAATGGAAATAA AGGGAAGGTTAAGGACTTTGGCAAGATTAAGTTGACCCCTGCGGGCCTGG CAGAGCTGGTCGGGCTGATCGCTGAAGGGAAGATTACCGGGAAGATAGCT AAGGAGCTCCTGCCGGAGTTGTTGGATGAGTGGGTTGGGGAGGAAGGAAA GGAGGGGGAGGGGGAGGCAGGGGCGGTGTTGGCCTTGGTGAAGGAGAGGG GGATGGAGGCCATTACGGACCCAGCGGCGATTGCGCTGTTGGTTGAAAAG GTGATGCAGGCGAATCCAGGGAAGGTCGCTGATTATAGGGCCGGGAAGAC CAAGATGCTAGGTTTTTTTGTGGGGATGGTGTTGAAGGAGAGTGGGAGTA GAGCTGATCCGGAGGTGGCACAGAGGTTGACGGAAGCAGCGTTGAAGGAC GGGATATAGGTCCTCGAACGCTACGAAGCTGTCGTCGGCATCGAAGTTCA TGCGCAGCTCCTCTCGGACACCAAAGCCTACTGCAGTTGCTCCACTCATT ACAATCCCAACGTGCCCAACGCCAACATCTGCCCAGTCTGCACGGGCGAG CCCGGCACGTTGCCGGTGCCCAACGCCCGTGTAGTCGAATTAGCCAGCAA GGCCGCTCTGGCCCTTCAATGCGAAATAGCTGCAGAAGTCCGTTATGACC GCAAAAATTATTTCTACCCCGATACGCCCAAAAACTACCAAATCACACAA TACACTCACCCACTGGGTGGGAAAGGTTTGCTGGAGCTCCCAAGTGGGAA AATGGTGGCCATCACCCGTTTACACATTGAAGAAGACTCGGCAAAGATGG TCCATCAAGGGTCGGACTCCTTGGCGGGCTCGACACATTCCCTTGTCGAT TTTAATAGGGCCGGGATTCCTCTAGCGGAGATCGTGTCTGAGCCAGACAT GCGTTCAGGGGCGGAAGCAGCCGAGTATGGGAGGGAGTTGCAGAAGGTCC TGCGATACGTAGGAGTAAGTGATGGGAACATGGCTGAGGGCTCGATGCGC CTTGACGTGAATGTGTCGATTCGACCCAAGGGGGAAAAGGCCCTGAGGGC TAAGGTGGAGGTGAAGAATGTGAACTCGTTCAAGTCCGTGCAGCAAGCGG TGGACTTCGAAGTGTTGCGGCAGGCCAAAGCCTACGATGCTGCAGAGCCC GTGAGGCAGGAAACGCGCATGTGGGACGAGAAAGAGCTATCGACCAAGCT CATGCGAGTTAAAGAAGGCGAATCCGACTATCGCTACTTTCCCGAACCGG ACGTCCCCCCTCTCACCCTCCCCCCCGCCCTCGTCGCGGCCTGGAAGAGC GAATTGCAGGAGCTGCCGGCGAAGAAGCGTGCGCGGTACCAGGATTCAGC GGGTTTTGGGTTGGATGCAGATGGACACGAGCTGCCCCCCTCAAAGAAAA AGGCCTCGGCCGGCGCAGCCTCTCCTCTGCACTTCACTCCGGCGCCTCGT GTTTGTTGCTGCCGCGGCTGCGGCCGCCACTGCGGCCACGACAGCACACG CTTTCGTCGTGCCAAGCAGCAGAGGCATTAATGGTGCCGCCATTTGGCGT GGGCGCACGGTGTACATGGGCAAGGGCAGTGGTGGGGGCGGAGGAAGCAA GAAAAAGGGGTCCGCGCTGCTGCAAGAGAAACGACCAAGGCGTTAACGGA AGATTTGAACGTGGCGCAATTTTACGAAAAAGCCGTTGAGGTCCACAAGG CAGACGCCAAGGAAGCAGCCAAATGGTTGATAGGTGATATTTTCGGGCAC TTGAATGGAAATAAAGGGAAGGTTAAGGACTTTGGCAAGATTAAGTTGAC CCCTGCGGGCCTGGCAGAGCTGGTCGGGCTGATCGCTGAAGGGAAGATTA CCGGGAAGATAGCTAAGGAGCTCCTGCCGGAGTTGTTGGATGAGTGGGTT GGGGAGGAAGGAAAGGAGGGGGAGGGGGAGGCAGGGGCGGTGTTGGCCTT GGTGAAGGAGAGGGGGATGGAGGCCATTACGGACCCAGCGGCGATTGCGC TGTTGGTTGAAAAGGTGATGCAGGCGAATCCAGGGAAGGTCGCTGATTAT AGGGCCGGGAAGACCAAGATGCTAGGTTTTTTTGTGGGGATGGTGTTGAA GGAGAGTGGGAGTAGAGCTGATCCGGAGGTGGCACAGAGGTTGACGGAAG CAGCGTTGAAGGACGGGATATAGGTCCTCGAACGCTACGAAGCTGTCGTC GGCATCGAAGTTCATGCGCAGCTCCTCTCGGACACCAAAGCCTACTGCAG TTGCTCCACTCATTACAATCCCAACGTGCCCAACGCCAACATCTGCCCAG TCTGCACGGGCGAGCCCGGCACGTTGCCGGTGCCCAACGCCCGTGTAGTC GAATTAGCCAGCAAGGCCGCTCTGGCCCTTCAATGCGAAATAGCTGCAGA AGTCCGTTATGACCGCAAAAATTATTTCTACCCCGATACGCCCAAAAACT ACCAAATCACACAATACACTCACCCACTGGGTGGGAAAGGTTTGCTGGAG CTCCCAAGTGGGAAAATGGTGGCCATCACCCGTTTACACATTGAAGAAGA CTCGGCAAAGATGGTCCATCAAGGGTCGGACTCCTTGGCGGGCTCGACAC ATTCCCTTGTCGATTTTAATAGGGCCGGGATTCCTCTAGCGGAGATCGTG TCTGAGCCAGACATGCGTTCAGGGGCGGAAGCAGCCGAGTATGGGAGGGA GTTGCAGAAGGTCCTGCGATACGTAGGAGTAAGTGATGGGAACATGGCTG AGGGCTCGATGCGCCTTGACGTGAATGTGTCGATTCGACCCAAGGGGGAA AAGGCCCTGAGGGCTAAGGTGGAGGTGAAGAATGTGAACTCGTTCAAGTC CGTGCAGCAAGCGGTGGACTTCGAAGTGTTGCGGCAGGCCAAAGCCTACG ATGCTGCAGAGCCCGTGAGGCAGGAAACGCGCATGTGGGACGAGAAAGAG CTATCGACCAAGCTCATGCGAGTTAAAGAAGGCGAATCCGACTATCGCTA CTTTCCCGAACCGGACGTCCCCCCTCTCACCCTCCCCCCCGCCCTCGTCG CGGCCTGGAAGAGCGAATTGCAGGAGCTGCCGGCGAAGAAGCGTGCGCGG TACCAGGATTCAGCGGGTTTTGGGTTGGATGCAGATGGACACGAGCTGCC CCCCTCAAAGAAAAAGGCCTCGGCCGGCGCAGCCTCTCCTCTGCACTTCA CTCCGGCGCCTCGTGTTTGTTGCTGCCGCGGCTGCGGCCGCCACTGCGGC CACGACAGCACACGCTTTCGTCGTGCCAAGCAGCAGAGGCATTAATGGTG CCGCCATTTGGCGTGGGCGCACGGTGTACATGGGCAAGGGCAGTGGTGGG GGCGGAGGAAGCAAGAAAAAGGGGTCCGCGCTGCTGCAAGAG back to top
|