jgi.p|Nanoce1779_2|577485, mRNA_498 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577485
Unique NamemRNA_498
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1829
Alignment locationscaffold_3:1204748..1206771 -

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Properties
Property NameValue
TranscriptId577571
TrackFilteredModels2
ProteinId577485
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1204748..1206771 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577485gene_498Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577485mRNA_498-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_498CDS_498Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_498 ID=mRNA_498|Name=jgi.p|Nanoce1779_2|577485|organism=Nannochloropsis oceanica|type=mRNA|length=1829bp
AGACAGGAAGGAAATAAATTTCCAGAAAGCAAGCCATGTTACAATGCTCT
TCCATCAGCTTGGTCGCTGTGTCTCTCCTCCTGTTGCAGCTCCTTGCCAA
AACCTCCCCCCAACCCCATCCTGAGTGCGGCCTCGGAGAGACCCCGCTGT
ATATCCAAGTGCACGGCACAGATAAACTCACGGAATGCACCGATTACTTC
GACGCCGTGGACCCTTACGCGGTCGTTACCGTCGGCCAAGACCGCTACAC
CGTCTCCAAGGTCACCAAAACGATCAACAACGACGCCGATCCCACCTGGG
ATCAAGTCCTAGACTATGGCTGCCAGGTAGGAAACGCCAAAATCGTTTTT
CGCGTGCGGGATCAGGATTACTTCGGGGATGAAGCCTGTCTCGGCCCACT
CGGCATCGTTGGCCCGTGGCCCAAATCGGGCAAGCGCCAAGTCATGTGCA
CCAGACCAGCGCCCACCGCCACCCACGGAAGCTCCCCTGGGACGGGCTGC
ATCTCGTTCACCCTGTATTATGGTGCTGCTCTACCTCCTATCATCATAGC
ATCAGACGGAGCCGTGACCGTCACTTCAGCAGCCGAGGCCATGGCCCCCT
CTCCCCCCTCCCCCCTCCCTTCCAAGCCCGACACCCCTTCCTCCCCCTTA
CCCACGGTCACTAAGCGCCCAGCAAACACCACCAGCACCCCCAAAGGCGT
AGGCGAAAGTTCCGATCCGTCCATTCCCCCCACTCCTCGTGCTCCCAGCC
GCCCTCCTCCTCCTTCCGACCCCACGCCACCCTTTGCGAATGTCTCTCGT
CCCTCCCTCTCCCAAGGCCAGCGCAATGCCAGCCAGCCTGCTGCTTCTGC
TCAGGCCAGGGAACGCCCTATGGTTCAGGCTCCCTCCCCCTTGGCTACTG
GAACGGAGGGCGAGAAACGGAAGGAACATGACAGGCAAAATGCGGCGAAT
GCAAGGAGAAAGTCCGCAGCCCTGGCTTTTGGGATTGTGGGGTTGCTTGC
TGTTGCCGGCGTGGGGGTAGGGCTGTTGGTGAGTCGACGACGGCGGCTGA
GGAGGGAGCAACACGGGCAGGACTTGGCACTAGATGAGGAGGGGGGGATG
CGACGGGGAGCGGCAGGAGACTCCACCCCGGGGTCCGTGGCGGTGCTCTA
AGAGGGGCGGGAGTGAGGAAAAAGGAGGACAAGGAGGGAAGGGGGATGAC
GAGATGGGACGAGAATTACGACCCCTGATTCCGTGTCGATGCTCTCAGAG
GTGGGTGAGGAGGAGGAATAGAAATTCCAGAAAAGGAGCGAGGCACGGAA
AGAGGTGGATGGTGCAGACATATACATGACATGAGCACATTTACATGTGG
AAAAGAGAACACAAAGACATGTTGAAAAGAGAACGAAGAAATGGATTGAT
GATAAGATTGATGAAGAAACAAAAGAAGAAGAAGCATAAGCAAAAGGCGC
AGGAAACGCAGGAGAATGATGGTTGTCATGAGAGAGGAAATGGAAGGATG
AAGAAGGCTGTTGTGCGGCATAGGAGGAGAAAGACAGGTATGCCCAAGGC
CCCTGAGTGTGCGTATGGGTTGGGTGCGAGAGCACAACCGCAAGAGCACC
AGCCAAAAAAAGACAACGCAAGGTAGGGGGTGAAAGATAGAGGAAAGATA
TGCACAAAGGGGGAGAGCAAAAGGGAGAGGCAAAGAGGAAGAAAGGATAC
ATACATGCTCAGAGGGCCACGAAAACGACCTCACATACACAAGACCAACT
GACGGACAAACAAACGTCAGAAAGCGAGCGATGGACCAGCCATGATATAG
AAAAAGTAAACAATTCAGGGTCACAAAAA
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protein sequence of jgi.p|Nanoce1779_2|577485

>mRNA_498-protein ID=mRNA_498-protein|Name=jgi.p|Nanoce1779_2|577485|organism=Nannochloropsis oceanica|type=polypeptide|length=372bp
MLQCSSISLVAVSLLLLQLLAKTSPQPHPECGLGETPLYIQVHGTDKLTE
CTDYFDAVDPYAVVTVGQDRYTVSKVTKTINNDADPTWDQVLDYGCQVGN
AKIVFRVRDQDYFGDEACLGPLGIVGPWPKSGKRQVMCTRPAPTATHGSS
PGTGCISFTLYYGAALPPIIIASDGAVTVTSAAEAMAPSPPSPLPSKPDT
PSSPLPTVTKRPANTTSTPKGVGESSDPSIPPTPRAPSRPPPPSDPTPPF
ANVSRPSLSQGQRNASQPAASAQARERPMVQAPSPLATGTEGEKRKEHDR
QNAANARRKSAALAFGIVGLLAVAGVGVGLLVSRRRRLRREQHGQDLALD
EEGGMRRGAAGDSTPGSVAVL*
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mRNA from alignment at scaffold_3:1204748..1206771-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_498 ID=mRNA_498|Name=jgi.p|Nanoce1779_2|577485|organism=Nannochloropsis oceanica|type=mRNA|length=2024bp|location=Sequence derived from alignment at scaffold_3:1204748..1206771- (Nannochloropsis oceanica)
AGACAGGAAGGAAATAAATTTCCAGAAAGCAAGCCATGTTACAATGCTCT
TCCATCAGCTTGGTCGCTGTGTCTCTCCTCCTGTTGCAGCTCCTTGCCAA
AACCTCCCCCCAACCCCATCCTGAGTGCGGCCTCGGAGAGACCCCGCTGT
ATATCCAAGTGCACGGCACAGATAAACTCACGGAATGCACCGATTACTTC
GACGCCGTGGACCCTTACGCGGTCGTTACCGTCGGCCAAGGTAAGTTAGT
GTGTTAGGGTGTTGGACAGGACTCTTGACTCGCACCTCCCTAGCCCCCCG
CACATTTGGAATCCGGGGGGTGTTGTAGTTAAATTGCTACCCGCGATGCT
TTCGATTTCCCCCATGACGACTCTCTTATCTTCATCTTATTCCTCAACCG
CTCTTCCCTTCCTCCCCTCCCACTTTTTCGTCCAGACCGCTACACCGTCT
CCAAGGTCACCAAAACGATCAACAACGACGCCGATCCCACCTGGGATCAA
GTCCTAGACTATGGCTGCCAGGTAGGAAACGCCAAAATCGTTTTTCGCGT
GCGGGATCAGGATTACTTCGGGGATGAAGCCTGTCTCGGCCCACTCGGCA
TCGTTGGCCCGTGGCCCAAATCGGGCAAGCGCCAAGTCATGTGCACCAGA
CCAGCGCCCACCGCCACCCACGGAAGCTCCCCTGGGACGGGCTGCATCTC
GTTCACCCTGTATTATGGTGCTGCTCTACCTCCTATCATCATAGCATCAG
ACGGAGCCGTGACCGTCACTTCAGCAGCCGAGGCCATGGCCCCCTCTCCC
CCCTCCCCCCTCCCTTCCAAGCCCGACACCCCTTCCTCCCCCTTACCCAC
GGTCACTAAGCGCCCAGCAAACACCACCAGCACCCCCAAAGGCGTAGGCG
AAAGTTCCGATCCGTCCATTCCCCCCACTCCTCGTGCTCCCAGCCGCCCT
CCTCCTCCTTCCGACCCCACGCCACCCTTTGCGAATGTCTCTCGTCCCTC
CCTCTCCCAAGGCCAGCGCAATGCCAGCCAGCCTGCTGCTTCTGCTCAGG
CCAGGGAACGCCCTATGGTTCAGGCTCCCTCCCCCTTGGCTACTGGAACG
GAGGGCGAGAAACGGAAGGAACATGACAGGCAAAATGCGGCGAATGCAAG
GAGAAAGTCCGCAGCCCTGGCTTTTGGGATTGTGGGGTTGCTTGCTGTTG
CCGGCGTGGGGGTAGGGCTGTTGGTGAGTCGACGACGGCGGCTGAGGAGG
GAGCAACACGGGCAGGACTTGGCACTAGATGAGGAGGGGGGGATGCGACG
GGGAGCGGCAGGAGACTCCACCCCGGGGTCCGTGGCGGTGCTCTAAGAGG
GGCGGGAGTGAGGAAAAAGGAGGACAAGGAGGGAAGGGGGATGACGAGAT
GGGACGAGAATTACGACCCCTGATTCCGTGTCGATGCTCTCAGAGGTGGG
TGAGGAGGAGGAATAGAAATTCCAGAAAAGGAGCGAGGCACGGAAAGAGG
TGGATGGTGCAGACATATACATGACATGAGCACATTTACATGTGGAAAAG
AGAACACAAAGACATGTTGAAAAGAGAACGAAGAAATGGATTGATGATAA
GATTGATGAAGAAACAAAAGAAGAAGAAGCATAAGCAAAAGGCGCAGGAA
ACGCAGGAGAATGATGGTTGTCATGAGAGAGGAAATGGAAGGATGAAGAA
GGCTGTTGTGCGGCATAGGAGGAGAAAGACAGGTATGCCCAAGGCCCCTG
AGTGTGCGTATGGGTTGGGTGCGAGAGCACAACCGCAAGAGCACCAGCCA
AAAAAAGACAACGCAAGGTAGGGGGTGAAAGATAGAGGAAAGATATGCAC
AAAGGGGGAGAGCAAAAGGGAGAGGCAAAGAGGAAGAAAGGATACATACA
TGCTCAGAGGGCCACGAAAACGACCTCACATACACAAGACCAACTGACGG
ACAAACAAACGTCAGAAAGCGAGCGATGGACCAGCCATGATATAGAAAAA
GTAAACAATTCAGGGTCACAAAAA
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Coding sequence (CDS) from alignment at scaffold_3:1204748..1206771-

>mRNA_498 ID=mRNA_498|Name=jgi.p|Nanoce1779_2|577485|organism=Nannochloropsis oceanica|type=CDS|length=2232bp|location=Sequence derived from alignment at scaffold_3:1204748..1206771- (Nannochloropsis oceanica)
ACCGCTACACCGTCTCCAAGGTCACCAAAACGATCAACAACGACGCCGAT
CCCACCTGGGATCAAGTCCTAGACTATGGCTGCCAGGTAGGAAACGCCAA
AATCGTTTTTCGCGTGCGGGATCAGGATTACTTCGGGGATGAAGCCTGTC
TCGGCCCACTCGGCATCGTTGGCCCGTGGCCCAAATCGGGCAAGCGCCAA
GTCATGTGCACCAGACCAGCGCCCACCGCCACCCACGGAAGCTCCCCTGG
GACGGGCTGCATCTCGTTCACCCTGTATTATGGTGCTGCTCTACCTCCTA
TCATCATAGCATCAGACGGAGCCGTGACCGTCACTTCAGCAGCCGAGGCC
ATGGCCCCCTCTCCCCCCTCCCCCCTCCCTTCCAAGCCCGACACCCCTTC
CTCCCCCTTACCCACGGTCACTAAGCGCCCAGCAAACACCACCAGCACCC
CCAAAGGCGTAGGCGAAAGTTCCGATCCGTCCATTCCCCCCACTCCTCGT
GCTCCCAGCCGCCCTCCTCCTCCTTCCGACCCCACGCCACCCTTTGCGAA
TGTCTCTCGTCCCTCCCTCTCCCAAGGCCAGCGCAATGCCAGCCAGCCTG
CTGCTTCTGCTCAGGCCAGGGAACGCCCTATGGTTCAGGCTCCCTCCCCC
TTGGCTACTGGAACGGAGGGCGAGAAACGGAAGGAACATGACAGGCAAAA
TGCGGCGAATGCAAGGAGAAAGTCCGCAGCCCTGGCTTTTGGGATTGTGG
GGTTGCTTGCTGTTGCCGGCGTGGGGGTAGGGCTGTTGGTGAGTCGACGA
CGGCGGCTGAGGAGGGAGCAACACGGGCAGGACTTGGCACTAGATGAGGA
GGGGGGGATGCGACGGGGAGCGGCAGGAGACTCCACCCCGGGGTCCGTGG
CGGTGCTCTAAATGTTACAATGCTCTTCCATCAGCTTGGTCGCTGTGTCT
CTCCTCCTGTTGCAGCTCCTTGCCAAAACCTCCCCCCAACCCCATCCTGA
GTGCGGCCTCGGAGAGACCCCGCTGTATATCCAAGTGCACGGCACAGATA
AACTCACGGAATGCACCGATTACTTCGACGCCGTGGACCCTTACGCGGTC
GTTACCGTCGGCCAAGACCGCTACACCGTCTCCAAGGTCACCAAAACGAT
CAACAACGACGCCGATCCCACCTGGGATCAAGTCCTAGACTATGGCTGCC
AGGTAGGAAACGCCAAAATCGTTTTTCGCGTGCGGGATCAGGATTACTTC
GGGGATGAAGCCTGTCTCGGCCCACTCGGCATCGTTGGCCCGTGGCCCAA
ATCGGGCAAGCGCCAAGTCATGTGCACCAGACCAGCGCCCACCGCCACCC
ACGGAAGCTCCCCTGGGACGGGCTGCATCTCGTTCACCCTGTATTATGGT
GCTGCTCTACCTCCTATCATCATAGCATCAGACGGAGCCGTGACCGTCAC
TTCAGCAGCCGAGGCCATGGCCCCCTCTCCCCCCTCCCCCCTCCCTTCCA
AGCCCGACACCCCTTCCTCCCCCTTACCCACGGTCACTAAGCGCCCAGCA
AACACCACCAGCACCCCCAAAGGCGTAGGCGAAAGTTCCGATCCGTCCAT
TCCCCCCACTCCTCGTGCTCCCAGCCGCCCTCCTCCTCCTTCCGACCCCA
CGCCACCCTTTGCGAATGTCTCTCGTCCCTCCCTCTCCCAAGGCCAGCGC
AATGCCAGCCAGCCTGCTGCTTCTGCTCAGGCCAGGGAACGCCCTATGGT
TCAGGCTCCCTCCCCCTTGGCTACTGGAACGGAGGGCGAGAAACGGAAGG
AACATGACAGGCAAAATGCGGCGAATGCAAGGAGAAAGTCCGCAGCCCTG
GCTTTTGGGATTGTGGGGTTGCTTGCTGTTGCCGGCGTGGGGGTAGGGCT
GTTGGTGAGTCGACGACGGCGGCTGAGGAGGGAGCAACACGGGCAGGACT
TGGCACTAGATGAGGAGGGGGGGATGCGACGGGGAGCGGCAGGAGACTCC
ACCCCGGGGTCCGTGGCGGTGCTCTAAATGTTACAATGCTCTTCCATCAG
CTTGGTCGCTGTGTCTCTCCTCCTGTTGCAGCTCCTTGCCAAAACCTCCC
CCCAACCCCATCCTGAGTGCGGCCTCGGAGAGACCCCGCTGTATATCCAA
GTGCACGGCACAGATAAACTCACGGAATGCACCGATTACTTCGACGCCGT
GGACCCTTACGCGGTCGTTACCGTCGGCCAAG
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Synonyms
Publications