jgi.p|Nanoce1779_2|633286, mRNA_9038 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|633286
Unique NamemRNA_9038
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1369
Alignment locationscaffold_30:280039..281407 +

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Properties
Property NameValue
TranscriptId633372
TrackFilteredModels2
ProteinId633286
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_30supercontigscaffold_30:280039..281407 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|633286gene_9038Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|633286mRNA_9038-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9038CDS_9038Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9038 ID=mRNA_9038|Name=jgi.p|Nanoce1779_2|633286|organism=Nannochloropsis oceanica|type=mRNA|length=1369bp
CCAGGCGTGGTGCGCCCATTGGGATTGCCATAGCTGCAATCTTACTCCTT
TCATGTCCCCGTCTTTACTACAGTAGTTCACGACGAGGCCCAGCCAAAAC
CCTTCACTACGTTGTGCGAGCGACAGGAATATCTCATCCTCCTTATCTTA
CACGACACACATCACAAATTTGCAGCAATTCTTCGAGCTCCGGTTCTCTG
AAGCGACAGCCATGGACCTCGAAGGAGGAGGTGGAGGAGGTAGCAGCTCG
ACCAGCACAAGCAACGCCATCAATAACAATCTCCTCCTGGAAGGCCAAGA
AGGAGAGGGCAACAGATCCGGGCGCCATATAGCTCTGCATCCTCTCGCCA
TCGTCACCATCTGTGACCACTGTACTCGGGTCAAAGTCGGTGGCTCCCTC
CTACACCCTACCTCGCGCATTCTTGGCATCCTCTTCGGTGTCCAAGACGG
ACTCCAAGTCTCCATCACAGACGCCTTTGAACTCCAATATGAGCTCTCCC
CCGCTGGTGATGGCTCCGTTCGAATCCCTCCTGGATACGTCAATGAAAAA
AGGGAGCTCTTTGGGGCGGTTCACCCCGGGGCGGAGGTCATGGGGTGGTA
TAGTGTGGGCGAAAGCATCTTACCCGGAGACCTCGAGATCCATCGGGCCA
TGTGCGAATGGAATGAGTCGCCTTTTTTCTTGTTATTATCGCCCGCGGCA
TCGTCGGGTGGAGCGGGGGCAGGAGTGGCGGCTGGGAGTGTGAAGGAGGG
GGAGTTACCTGTACGATTGTTTGAGTCGGAATTGCATGTGTCTCGCGGGG
TGCCGACCATGATGTTTGTCAGGGTGCCCTTTCGCTTATCGGCAGCGGAG
GCAGAGCGAATTAGTGTGGAGCATGTCGTGAAAGCGGCGCCGATGGAGGG
GGCGAGTAGCGTGGACTTGCACGTCGATGGGGTAAGGACCAGTCTGAAGG
CGTTAGTTTTGAGAGTGAAGACGATTTTGAAGGTATTGGAGAGGTTGAAG
GAGGGAGGGAAGGAGGGAGGATTGAAGACAGAAGATTGGAAGTTGTTGAG
GATGGTTGGATCGTTGTGTGATTCGTTGCCTGCTGCGGGGCGCGAGGGGG
GAAGGGGAGTGAGGGAATGGGAGGAGTCGTTCTTGAGGGAATATAGTGAT
AGTCTGGTTGTGACGTACCTGGCGAGTGTGAGTAAATTGTCGTGTCTGAC
TGGTGAAGTGAGTGAGAAATTTGCGGTGGCCTTTGGGGAGGGCCGGGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGGAGGGGGGGAAGAATCAGGCGCTGGAGAGG
AGGGGGGGAGGAAGGGTGA
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protein sequence of jgi.p|Nanoce1779_2|633286

>mRNA_9038-protein ID=mRNA_9038-protein|Name=jgi.p|Nanoce1779_2|633286|organism=Nannochloropsis oceanica|type=polypeptide|length=386bp
MDLEGGGGGGSSSTSTSNAINNNLLLEGQEGEGNRSGRHIALHPLAIVTI
CDHCTRVKVGGSLLHPTSRILGILFGVQDGLQVSITDAFELQYELSPAGD
GSVRIPPGYVNEKRELFGAVHPGAEVMGWYSVGESILPGDLEIHRAMCEW
NESPFFLLLSPAASSGGAGAGVAAGSVKEGELPVRLFESELHVSRGVPTM
MFVRVPFRLSAAEAERISVEHVVKAAPMEGASSVDLHVDGVRTSLKALVL
RVKTILKVLERLKEGGKEGGLKTEDWKLLRMVGSLCDSLPAAGREGGRGV
REWEESFLREYSDSLVVTYLASVSKLSCLTGEVSEKFAVAFGEGRGGGGG
GGGGGGGGGGGGGGGGGGGGRGGRIRRWRGGGEEG*
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mRNA from alignment at scaffold_30:280039..281407+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9038 ID=mRNA_9038|Name=jgi.p|Nanoce1779_2|633286|organism=Nannochloropsis oceanica|type=mRNA|length=1369bp|location=Sequence derived from alignment at scaffold_30:280039..281407+ (Nannochloropsis oceanica)
CCAGGCGTGGTGCGCCCATTGGGATTGCCATAGCTGCAATCTTACTCCTT
TCATGTCCCCGTCTTTACTACAGTAGTTCACGACGAGGCCCAGCCAAAAC
CCTTCACTACGTTGTGCGAGCGACAGGAATATCTCATCCTCCTTATCTTA
CACGACACACATCACAAATTTGCAGCAATTCTTCGAGCTCCGGTTCTCTG
AAGCGACAGCCATGGACCTCGAAGGAGGAGGTGGAGGAGGTAGCAGCTCG
ACCAGCACAAGCAACGCCATCAATAACAATCTCCTCCTGGAAGGCCAAGA
AGGAGAGGGCAACAGATCCGGGCGCCATATAGCTCTGCATCCTCTCGCCA
TCGTCACCATCTGTGACCACTGTACTCGGGTCAAAGTCGGTGGCTCCCTC
CTACACCCTACCTCGCGCATTCTTGGCATCCTCTTCGGTGTCCAAGACGG
ACTCCAAGTCTCCATCACAGACGCCTTTGAACTCCAATATGAGCTCTCCC
CCGCTGGTGATGGCTCCGTTCGAATCCCTCCTGGATACGTCAATGAAAAA
AGGGAGCTCTTTGGGGCGGTTCACCCCGGGGCGGAGGTCATGGGGTGGTA
TAGTGTGGGCGAAAGCATCTTACCCGGAGACCTCGAGATCCATCGGGCCA
TGTGCGAATGGAATGAGTCGCCTTTTTTCTTGTTATTATCGCCCGCGGCA
TCGTCGGGTGGAGCGGGGGCAGGAGTGGCGGCTGGGAGTGTGAAGGAGGG
GGAGTTACCTGTACGATTGTTTGAGTCGGAATTGCATGTGTCTCGCGGGG
TGCCGACCATGATGTTTGTCAGGGTGCCCTTTCGCTTATCGGCAGCGGAG
GCAGAGCGAATTAGTGTGGAGCATGTCGTGAAAGCGGCGCCGATGGAGGG
GGCGAGTAGCGTGGACTTGCACGTCGATGGGGTAAGGACCAGTCTGAAGG
CGTTAGTTTTGAGAGTGAAGACGATTTTGAAGGTATTGGAGAGGTTGAAG
GAGGGAGGGAAGGAGGGAGGATTGAAGACAGAAGATTGGAAGTTGTTGAG
GATGGTTGGATCGTTGTGTGATTCGTTGCCTGCTGCGGGGCGCGAGGGGG
GAAGGGGAGTGAGGGAATGGGAGGAGTCGTTCTTGAGGGAATATAGTGAT
AGTCTGGTTGTGACGTACCTGGCGAGTGTGAGTAAATTGTCGTGTCTGAC
TGGTGAAGTGAGTGAGAAATTTGCGGTGGCCTTTGGGGAGGGCCGGGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGGAGGGGGGGAAGAATCAGGCGCTGGAGAGG
AGGGGGGGAGGAAGGGTGA
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Coding sequence (CDS) from alignment at scaffold_30:280039..281407+

>mRNA_9038 ID=mRNA_9038|Name=jgi.p|Nanoce1779_2|633286|organism=Nannochloropsis oceanica|type=CDS|length=1158bp|location=Sequence derived from alignment at scaffold_30:280039..281407+ (Nannochloropsis oceanica)
ATGGACCTCGAAGGAGGAGGTGGAGGAGGTAGCAGCTCGACCAGCACAAG
CAACGCCATCAATAACAATCTCCTCCTGGAAGGCCAAGAAGGAGAGGGCA
ACAGATCCGGGCGCCATATAGCTCTGCATCCTCTCGCCATCGTCACCATC
TGTGACCACTGTACTCGGGTCAAAGTCGGTGGCTCCCTCCTACACCCTAC
CTCGCGCATTCTTGGCATCCTCTTCGGTGTCCAAGACGGACTCCAAGTCT
CCATCACAGACGCCTTTGAACTCCAATATGAGCTCTCCCCCGCTGGTGAT
GGCTCCGTTCGAATCCCTCCTGGATACGTCAATGAAAAAAGGGAGCTCTT
TGGGGCGGTTCACCCCGGGGCGGAGGTCATGGGGTGGTATAGTGTGGGCG
AAAGCATCTTACCCGGAGACCTCGAGATCCATCGGGCCATGTGCGAATGG
AATGAGTCGCCTTTTTTCTTGTTATTATCGCCCGCGGCATCGTCGGGTGG
AGCGGGGGCAGGAGTGGCGGCTGGGAGTGTGAAGGAGGGGGAGTTACCTG
TACGATTGTTTGAGTCGGAATTGCATGTGTCTCGCGGGGTGCCGACCATG
ATGTTTGTCAGGGTGCCCTTTCGCTTATCGGCAGCGGAGGCAGAGCGAAT
TAGTGTGGAGCATGTCGTGAAAGCGGCGCCGATGGAGGGGGCGAGTAGCG
TGGACTTGCACGTCGATGGGGTAAGGACCAGTCTGAAGGCGTTAGTTTTG
AGAGTGAAGACGATTTTGAAGGTATTGGAGAGGTTGAAGGAGGGAGGGAA
GGAGGGAGGATTGAAGACAGAAGATTGGAAGTTGTTGAGGATGGTTGGAT
CGTTGTGTGATTCGTTGCCTGCTGCGGGGCGCGAGGGGGGAAGGGGAGTG
AGGGAATGGGAGGAGTCGTTCTTGAGGGAATATAGTGATAGTCTGGTTGT
GACGTACCTGGCGAGTGTGAGTAAATTGTCGTGTCTGACTGGTGAAGTGA
GTGAGAAATTTGCGGTGGCCTTTGGGGAGGGCCGGGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGGAGGGGGGGAAGAATCAGGCGCTGGAGAGGAGGGGGGGAGG
AAGGGTGA
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Synonyms
Publications