jgi.p|Nanoce1779_2|606217, mRNA_9505 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|606217
Unique Name	mRNA_9505
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1808
Alignment location	scaffold_34:185697..187504 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	606303
Track	FilteredModels2
ProteinId	606217

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_34	supercontig	scaffold_34:185697..187504 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|606217	gene_9505	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|606217	mRNA_9505-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9505	CDS_9505	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_34:185697..187504+
coding sequence from alignment at scaffold_34:185697..187504+

mRNA sequence

>mRNA_9505 ID=mRNA_9505|Name=jgi.p|Nanoce1779_2|606217|organism=Nannochloropsis oceanica|type=mRNA|length=1808bp
CAGTGGTAAACCTCCTCCTCCCCTCTACCCCGCCTTCGCCCCCTCCATGC
TCCACTACGACATCAGCAACAACAACAACACCAGTACCAGCAGTGATGGG
GGCGAGGGAGGGGGAGAAGGGGGCGGAGGGAGCAGTGGCACGACCAGCCA
CCTTCCCTCCGTGGCCGGGGGGGAAGAAGGGGGGCCTCAGTGCGTCGTCT
GTCTCGAACCACTCGGCGGCCTCCTCCCTCCCTCCCATAACCCCCTTCCA
CAACCTGCGGTCCCTCCCTCCCTCCCCGCCCCCCTTCCTTCGACCTCCAC
CCCTGTCCTCATCACTGCCTGCAACCATGCGTTCCATATGCCCTGCCTGC
GTCGCCTTTCCTCCCCCCTGTGTCCCGTCTGCAGGTACAACCACGACGAT
ACCCTCGCGCGTCATTCCTCCGCCTGTGGCGAATGCGGTCGTTCCACGGA
TTTATGGGTCTGCCTCGTCTGTGGCTTTGTAGGCTGTGGCCGGTACCACG
CGCAACACTCTCGCAAGCACTATTTCATGACACTCCACGCCTACGCCATT
GAGGTTCAGACGCAGCAGGTCTGGGATTATGTGGGCGATGGGTACGTCCA
TCGCCTCCTATACATGCCTCAGAGCATCACGGGGGAGGGAGGGAGGGAGG
GAGGGAAAGTGGTAGAGGTGGCAGACCCGTACACGCGGTCTGACCAGCGG
CCGAGGACAACGACTCGAGTATCGGAGGAGGTGGAGGAGGAGGTCGTGCA
CCGGAAGCTCGAGAGCTGGGCGGAGCAGTACACGGTGCTGGTGTCGGCAG
GGCTGGAGGAACAACGACAACGTTTTGAAGAGAGGCTGGCCGCGCTGAGG
GCCTCTTTCCCTCCCTCCCTCGAGCCCTCGTCCTCGCGGCCTGGGATGGT
GGTGGCTGCACTAAAACAGGAGAAGCGTCAGATGGAGCAGCGGTGTGCGG
GGGCCCGGGAGCGATTGAGGAAAGTAAGGGAAGAGATTGGGTTCTTGCGT
GAGTTGAATAAGTCCCTGGAGGCGAACCAGGAACCGGTGGCCGCCAGCAT
ACGCCAAGCGGAGGAAGAGCGGGTGGGGAGTGAGGAAGAAAGGGAGAGGA
AGGTCAGGGTGCTGGAAGCACAGGTACGGGAGTTGATGATGCGGTTGGAT
GGAGGAGACAAACGAGTGAAAGGAGGAGGAGGAGGAGGAGGAGGGGAAAG
AGGAGGAGGGGAAGGAGGTGGAGTAGGAGGAGGAGGAGGGGTGGGAGAGG
CCCAGGGCCATGGGGTGGCTTCAGCTGGGGGAAAAGGAGATGAAGTACTG
TAAAAGACAATATGAGGTGCCATCTGTGCGGCTGACTTGGCCATGAAAGT
GTGAATAGAATGCAGAAAGAAATAACATAGCATAACAATAACGTAAGGAT
GTACCAAAGCGTGCTTGCATGTTAGAGGTAGCTCACTTCTGTGCGGTCCG
CACCACGGTTCGGCAAGATCATCAGGGTATCGATGGAGGCAGCAAAATGG
AGTGTACTTTGGCGTTCACACCCGCACCCTTCTCGGCCAGTGACAGCGCA
TCAATGGCAAGCCTACAGCCGCACCTCTCCTCGAGCCGTCCTGGACTGGC
TTCTATCCGTTGCCGCACCTTGGCCATGCGCGAGATGTTAACCTCTGTCA
CAGCTTCCATTTCGCATTGCCCGCTATTGTGTACACACTGTAACGCTGCA
TGATGTGCGTGGAATGTGGCGTTGCGGCATGGAAAGCGCGTCGAACATAC
AGGCAGAGGCAGGAAGCAAAATGAAGACGCTGCCGGCGCTGCTGGCGCTG
CTTCTCCT

protein sequence of jgi.p|Nanoce1779_2|606217

>mRNA_9505-protein ID=mRNA_9505-protein|Name=jgi.p|Nanoce1779_2|606217|organism=Nannochloropsis oceanica|type=polypeptide|length=419bp
MLHYDISNNNNTSTSSDGGEGGGEGGGGSSGTTSHLPSVAGGEEGGPQCV
VCLEPLGGLLPPSHNPLPQPAVPPSLPAPLPSTSTPVLITACNHAFHMPC
LRRLSSPLCPVCRYNHDDTLARHSSACGECGRSTDLWVCLVCGFVGCGRY
HAQHSRKHYFMTLHAYAIEVQTQQVWDYVGDGYVHRLLYMPQSITGEGGR
EGGKVVEVADPYTRSDQRPRTTTRVSEEVEEEVVHRKLESWAEQYTVLVS
AGLEEQRQRFEERLAALRASFPPSLEPSSSRPGMVVAALKQEKRQMEQRC
AGARERLRKVREEIGFLRELNKSLEANQEPVAASIRQAEEERVGSEEERE
RKVRVLEAQVRELMMRLDGGDKRVKGGGGGGGGERGGGEGGGVGGGGGVG
EAQGHGVASAGGKGDEVL*

mRNA from alignment at scaffold_34:185697..187504+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9505 ID=mRNA_9505|Name=jgi.p|Nanoce1779_2|606217|organism=Nannochloropsis oceanica|type=mRNA|length=1808bp|location=Sequence derived from alignment at scaffold_34:185697..187504+ (Nannochloropsis oceanica)
CAGTGGTAAACCTCCTCCTCCCCTCTACCCCGCCTTCGCCCCCTCCATGC
TCCACTACGACATCAGCAACAACAACAACACCAGTACCAGCAGTGATGGG
GGCGAGGGAGGGGGAGAAGGGGGCGGAGGGAGCAGTGGCACGACCAGCCA
CCTTCCCTCCGTGGCCGGGGGGGAAGAAGGGGGGCCTCAGTGCGTCGTCT
GTCTCGAACCACTCGGCGGCCTCCTCCCTCCCTCCCATAACCCCCTTCCA
CAACCTGCGGTCCCTCCCTCCCTCCCCGCCCCCCTTCCTTCGACCTCCAC
CCCTGTCCTCATCACTGCCTGCAACCATGCGTTCCATATGCCCTGCCTGC
GTCGCCTTTCCTCCCCCCTGTGTCCCGTCTGCAGGTACAACCACGACGAT
ACCCTCGCGCGTCATTCCTCCGCCTGTGGCGAATGCGGTCGTTCCACGGA
TTTATGGGTCTGCCTCGTCTGTGGCTTTGTAGGCTGTGGCCGGTACCACG
CGCAACACTCTCGCAAGCACTATTTCATGACACTCCACGCCTACGCCATT
GAGGTTCAGACGCAGCAGGTCTGGGATTATGTGGGCGATGGGTACGTCCA
TCGCCTCCTATACATGCCTCAGAGCATCACGGGGGAGGGAGGGAGGGAGG
GAGGGAAAGTGGTAGAGGTGGCAGACCCGTACACGCGGTCTGACCAGCGG
CCGAGGACAACGACTCGAGTATCGGAGGAGGTGGAGGAGGAGGTCGTGCA
CCGGAAGCTCGAGAGCTGGGCGGAGCAGTACACGGTGCTGGTGTCGGCAG
GGCTGGAGGAACAACGACAACGTTTTGAAGAGAGGCTGGCCGCGCTGAGG
GCCTCTTTCCCTCCCTCCCTCGAGCCCTCGTCCTCGCGGCCTGGGATGGT
GGTGGCTGCACTAAAACAGGAGAAGCGTCAGATGGAGCAGCGGTGTGCGG
GGGCCCGGGAGCGATTGAGGAAAGTAAGGGAAGAGATTGGGTTCTTGCGT
GAGTTGAATAAGTCCCTGGAGGCGAACCAGGAACCGGTGGCCGCCAGCAT
ACGCCAAGCGGAGGAAGAGCGGGTGGGGAGTGAGGAAGAAAGGGAGAGGA
AGGTCAGGGTGCTGGAAGCACAGGTACGGGAGTTGATGATGCGGTTGGAT
GGAGGAGACAAACGAGTGAAAGGAGGAGGAGGAGGAGGAGGAGGGGAAAG
AGGAGGAGGGGAAGGAGGTGGAGTAGGAGGAGGAGGAGGGGTGGGAGAGG
CCCAGGGCCATGGGGTGGCTTCAGCTGGGGGAAAAGGAGATGAAGTACTG
TAAAAGACAATATGAGGTGCCATCTGTGCGGCTGACTTGGCCATGAAAGT
GTGAATAGAATGCAGAAAGAAATAACATAGCATAACAATAACGTAAGGAT
GTACCAAAGCGTGCTTGCATGTTAGAGGTAGCTCACTTCTGTGCGGTCCG
CACCACGGTTCGGCAAGATCATCAGGGTATCGATGGAGGCAGCAAAATGG
AGTGTACTTTGGCGTTCACACCCGCACCCTTCTCGGCCAGTGACAGCGCA
TCAATGGCAAGCCTACAGCCGCACCTCTCCTCGAGCCGTCCTGGACTGGC
TTCTATCCGTTGCCGCACCTTGGCCATGCGCGAGATGTTAACCTCTGTCA
CAGCTTCCATTTCGCATTGCCCGCTATTGTGTACACACTGTAACGCTGCA
TGATGTGCGTGGAATGTGGCGTTGCGGCATGGAAAGCGCGTCGAACATAC
AGGCAGAGGCAGGAAGCAAAATGAAGACGCTGCCGGCGCTGCTGGCGCTG
CTTCTCCT

Coding sequence (CDS) from alignment at scaffold_34:185697..187504+

>mRNA_9505 ID=mRNA_9505|Name=jgi.p|Nanoce1779_2|606217|organism=Nannochloropsis oceanica|type=CDS|length=1257bp|location=Sequence derived from alignment at scaffold_34:185697..187504+ (Nannochloropsis oceanica)
ATGCTCCACTACGACATCAGCAACAACAACAACACCAGTACCAGCAGTGA
TGGGGGCGAGGGAGGGGGAGAAGGGGGCGGAGGGAGCAGTGGCACGACCA
GCCACCTTCCCTCCGTGGCCGGGGGGGAAGAAGGGGGGCCTCAGTGCGTC
GTCTGTCTCGAACCACTCGGCGGCCTCCTCCCTCCCTCCCATAACCCCCT
TCCACAACCTGCGGTCCCTCCCTCCCTCCCCGCCCCCCTTCCTTCGACCT
CCACCCCTGTCCTCATCACTGCCTGCAACCATGCGTTCCATATGCCCTGC
CTGCGTCGCCTTTCCTCCCCCCTGTGTCCCGTCTGCAGGTACAACCACGA
CGATACCCTCGCGCGTCATTCCTCCGCCTGTGGCGAATGCGGTCGTTCCA
CGGATTTATGGGTCTGCCTCGTCTGTGGCTTTGTAGGCTGTGGCCGGTAC
CACGCGCAACACTCTCGCAAGCACTATTTCATGACACTCCACGCCTACGC
CATTGAGGTTCAGACGCAGCAGGTCTGGGATTATGTGGGCGATGGGTACG
TCCATCGCCTCCTATACATGCCTCAGAGCATCACGGGGGAGGGAGGGAGG
GAGGGAGGGAAAGTGGTAGAGGTGGCAGACCCGTACACGCGGTCTGACCA
GCGGCCGAGGACAACGACTCGAGTATCGGAGGAGGTGGAGGAGGAGGTCG
TGCACCGGAAGCTCGAGAGCTGGGCGGAGCAGTACACGGTGCTGGTGTCG
GCAGGGCTGGAGGAACAACGACAACGTTTTGAAGAGAGGCTGGCCGCGCT
GAGGGCCTCTTTCCCTCCCTCCCTCGAGCCCTCGTCCTCGCGGCCTGGGA
TGGTGGTGGCTGCACTAAAACAGGAGAAGCGTCAGATGGAGCAGCGGTGT
GCGGGGGCCCGGGAGCGATTGAGGAAAGTAAGGGAAGAGATTGGGTTCTT
GCGTGAGTTGAATAAGTCCCTGGAGGCGAACCAGGAACCGGTGGCCGCCA
GCATACGCCAAGCGGAGGAAGAGCGGGTGGGGAGTGAGGAAGAAAGGGAG
AGGAAGGTCAGGGTGCTGGAAGCACAGGTACGGGAGTTGATGATGCGGTT
GGATGGAGGAGACAAACGAGTGAAAGGAGGAGGAGGAGGAGGAGGAGGGG
AAAGAGGAGGAGGGGAAGGAGGTGGAGTAGGAGGAGGAGGAGGGGTGGGA
GAGGCCCAGGGCCATGGGGTGGCTTCAGCTGGGGGAAAAGGAGATGAAGT
ACTGTAA

Synonyms

Publications