jgi.p|Nanoce1779_2|607268, mRNA_9672 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|607268
Unique NamemRNA_9672
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length997
Alignment locationscaffold_38:62630..63626 +

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Properties
Property NameValue
TranscriptId607354
TrackFilteredModels2
ProteinId607268
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_38supercontigscaffold_38:62630..63626 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|607268gene_9672Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|607268mRNA_9672-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9672CDS_9672Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9672 ID=mRNA_9672|Name=jgi.p|Nanoce1779_2|607268|organism=Nannochloropsis oceanica|type=mRNA|length=997bp
GAACGGCGAGGGCTTGTAAGATAATGATGAGGAGGCTGTGATGGAGGCAG
GGAGGGAAGAAGATGGGAGAGACGACTGCAATTGCGGCTGATGGCTGCCG
ATGGATAGTACTGGCATATCATCTTTCATTCCTGAAGGACTTCGGAACAG
GTATATTGAAATTTATTAAAGCTGATGGCGGAGAGAGCTCTCTTCTTAGC
TCGAAAAGGAGATCCCATAGGTGGGAGGGGGGATTTGGATCACCAGCTCC
ATGCCCTCAATTCGAAGCAAATGTGTTTCGGCAAATCCACCAGTTTCCCC
ATCCCACTTGTTCTTGAACTGCGTCCCACACCCGTCGCTCCACATGCACA
GTCGCCGCAGTGCTCACTCATCCATTTATGCCGCTACCTTTTCCGTGACC
CTTTTGAAGTGAGTCAGCAAAATGTCCAGCATCTTGTGCATGAAGTTGTT
GGATTGGCTGCGGTCCCCGCTCAGGTACAACCAGGAAGACTACTTGCATT
TTCATCTTTCCGTCATTGCCCGTTGGGGCCTCATGTCACAGACCATCACG
TAGTGAGAATAGTTCCACCAGTAGCCATTTGTGGCAACGATGTTGACCAG
CACAAAGCTAGGCGGGTATTTTTGCTGCAATGAAAATGACAAATATTGTG
CGCAGACCGCACATTAAACTATTTTTCTCAAAGTAAGGCCTTGGGCGTGT
TCAGGGACATGAATATATTTGTTAATTTGTATATTTCGTCCATGATTGTT
GTAATGTGTCCTTTCATTCACATAAAATTTACTCTCTGATGAAGTAATAT
CTGCAGTTTGTACATGAAATCACCGCCCTGAAGAAGTATTTCCTGCATTT
CGTGCACGATCATAGATCCGGACGATTGCCGAATGAAGTGCTTTTCGTCC
AAAGTTTGGTCAGGACAGTCTGCCTGCAGACCAGGAAAAAGCGTTCGAAA
TCCACAACAAGAAATGGTATTTTCCTTTTTTCTTCAATTCCGTCGGC
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protein sequence of jgi.p|Nanoce1779_2|607268

>mRNA_9672-protein ID=mRNA_9672-protein|Name=jgi.p|Nanoce1779_2|607268|organism=Nannochloropsis oceanica|type=polypeptide|length=153bp
MAERALFLARKGDPIGGRGDLDHQLHALNSKQMCFGKSTSFPIPLVLELR
PTPVAPHAQSPQCSLIHLCRYLFRDPFEVSQQNVQHLVHEVVGLAAVPAQ
VQPGRLLAFSSFRHCPLGPHVTDHHVVRIVPPVAICGNDVDQHKARRVFL
LQ*
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mRNA from alignment at scaffold_38:62630..63626+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9672 ID=mRNA_9672|Name=jgi.p|Nanoce1779_2|607268|organism=Nannochloropsis oceanica|type=mRNA|length=997bp|location=Sequence derived from alignment at scaffold_38:62630..63626+ (Nannochloropsis oceanica)
GAACGGCGAGGGCTTGTAAGATAATGATGAGGAGGCTGTGATGGAGGCAG
GGAGGGAAGAAGATGGGAGAGACGACTGCAATTGCGGCTGATGGCTGCCG
ATGGATAGTACTGGCATATCATCTTTCATTCCTGAAGGACTTCGGAACAG
GTATATTGAAATTTATTAAAGCTGATGGCGGAGAGAGCTCTCTTCTTAGC
TCGAAAAGGAGATCCCATAGGTGGGAGGGGGGATTTGGATCACCAGCTCC
ATGCCCTCAATTCGAAGCAAATGTGTTTCGGCAAATCCACCAGTTTCCCC
ATCCCACTTGTTCTTGAACTGCGTCCCACACCCGTCGCTCCACATGCACA
GTCGCCGCAGTGCTCACTCATCCATTTATGCCGCTACCTTTTCCGTGACC
CTTTTGAAGTGAGTCAGCAAAATGTCCAGCATCTTGTGCATGAAGTTGTT
GGATTGGCTGCGGTCCCCGCTCAGGTACAACCAGGAAGACTACTTGCATT
TTCATCTTTCCGTCATTGCCCGTTGGGGCCTCATGTCACAGACCATCACG
TAGTGAGAATAGTTCCACCAGTAGCCATTTGTGGCAACGATGTTGACCAG
CACAAAGCTAGGCGGGTATTTTTGCTGCAATGAAAATGACAAATATTGTG
CGCAGACCGCACATTAAACTATTTTTCTCAAAGTAAGGCCTTGGGCGTGT
TCAGGGACATGAATATATTTGTTAATTTGTATATTTCGTCCATGATTGTT
GTAATGTGTCCTTTCATTCACATAAAATTTACTCTCTGATGAAGTAATAT
CTGCAGTTTGTACATGAAATCACCGCCCTGAAGAAGTATTTCCTGCATTT
CGTGCACGATCATAGATCCGGACGATTGCCGAATGAAGTGCTTTTCGTCC
AAAGTTTGGTCAGGACAGTCTGCCTGCAGACCAGGAAAAAGCGTTCGAAA
TCCACAACAAGAAATGGTATTTTCCTTTTTTCTTCAATTCCGTCGGC
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Coding sequence (CDS) from alignment at scaffold_38:62630..63626+

>mRNA_9672 ID=mRNA_9672|Name=jgi.p|Nanoce1779_2|607268|organism=Nannochloropsis oceanica|type=CDS|length=459bp|location=Sequence derived from alignment at scaffold_38:62630..63626+ (Nannochloropsis oceanica)
ATGGCGGAGAGAGCTCTCTTCTTAGCTCGAAAAGGAGATCCCATAGGTGG
GAGGGGGGATTTGGATCACCAGCTCCATGCCCTCAATTCGAAGCAAATGT
GTTTCGGCAAATCCACCAGTTTCCCCATCCCACTTGTTCTTGAACTGCGT
CCCACACCCGTCGCTCCACATGCACAGTCGCCGCAGTGCTCACTCATCCA
TTTATGCCGCTACCTTTTCCGTGACCCTTTTGAAGTGAGTCAGCAAAATG
TCCAGCATCTTGTGCATGAAGTTGTTGGATTGGCTGCGGTCCCCGCTCAG
GTACAACCAGGAAGACTACTTGCATTTTCATCTTTCCGTCATTGCCCGTT
GGGGCCTCATGTCACAGACCATCACGTAGTGAGAATAGTTCCACCAGTAG
CCATTTGTGGCAACGATGTTGACCAGCACAAAGCTAGGCGGGTATTTTTG
CTGCAATGA
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Synonyms
Publications