jgi.p|Nanoce1779_2|578830, mRNA_2039 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578830
Unique NamemRNA_2039
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1460
Alignment locationscaffold_4:622660..624119 +

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Properties
Property NameValue
TranscriptId578916
TrackFilteredModels2
ProteinId578830
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:622660..624119 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578830gene_2039Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578830mRNA_2039-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2039CDS_2039Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2039 ID=mRNA_2039|Name=jgi.p|Nanoce1779_2|578830|organism=Nannochloropsis oceanica|type=mRNA|length=1460bp
ACAGGGCGCCTTTAGTCCACCGCTTATGGCACCGAGGTTGTCCTCACGGC
GGGGCAGCATTATGCGAGCTCAAGCCGTCCTCGCTCTTGCCTGCAGCTGC
AGCTGTACCCGTGCCTTTGTCGGGCCACCACCACCACCACCGCCATTTGA
CTCGTCCGTGGGTCCGCTGTACGGAGGCCGCATTTTTGATGGTTTCTTCA
ACGGCGCGTCGTCCACCGCCACGAGCGGCAGCAGCAGCGGTCGCGTGCAG
CTTGGCGACCTGAAAGTGAGTCCAATGGGGGTCGGCACTTGGGCGTGGGG
CAATCAGTTCCTCTGGGGCTACTCCCCACAAAAGTCGGATGCGGCCTTGC
AAGAAACATTTGACCACGTCTTGAATGCGGGCATCAATTGGTTTGACTCC
GCTGACTCATATGGAACGGGGAGACTGGAGGGGCGGAGTGAGGTCTTGCT
AGGGCAATTTCTCAAGGAGCACGACTACAAGCGCGGTGGGGGAAAGATAC
GGAGTTCTGATGACGTATACGTGGCTACTAAGATCGCGCCTTACCCCTTC
CGACTAGGCAAGGAAAGTATCAAAAACGCCATGAAAGAGAGCAGTCGAAG
GCTTGACAGGGGAAGAGCGGGTGTTGATATTGGACAGTTGCATTGGGCTC
CCCCATTTGGTTGGCAAGAGAAGGCATATTGGGCAGGCCTTGCTGAAATG
AAAAAAGAGGGGAGTATCAAGGCAATTGGCTTGAGTAATTATGGTCCAAA
AAAGCTACGGCAGGCGGCGGAGACCTTCAGGAAGGAACATGGCGTCTGTC
TCGCCTCCAACCAAGTCCAATTCTCTCTTGTCTCGACATTGCCTGTGCAG
AGCGGCTTGGTTGAAATAGCAGCCAGCGAGGGAGTGCGCCTCATTGCTTA
TAGTCCTTTAGGATTGGGAGTTTTGACGGGAAGGTATAGCATGGAGAAGC
AGCGGTTACCGGAAGGGCCCCGTCGCATTTTGTTCAAAGAGCTCCTTCCG
GCGTTGGCCCCCGTCCTGGCCACCATGGACGAGATTGCGTCTGAACGAAC
CCGTAAAAACCAAGGTGCGCGAGGGCAGCGTGTGACGCATTCACAAATTG
CGTTAAACTGGTGTCGGTCGAAAGGAGCAGTGCCAATCGTGGGGCTGAAA
AAATTAGATCAAGCGAAAGAAGCAACCGCTGCACTGGAGTGGAAATTGAC
CTCGGCAGAAACGGCAGCGTTGGATGCGGCAGTCGCGAGCATGCCCCGGG
GGACAGGACAAACAGTGCAAAATATATTCCAGACCGATTGAAAAAAAATG
GGGAGAAGCGGAAATAAATGAAGTAGGCAAAAGAAATAAATGATGAACAT
ACATGAATACACCTGCACAGAGTAGTCTTGCTGCTCGTACTTTGTAGTCT
TCTTCAAAGGTAAAATGTTGGGAACAAAACATGTCACAAAGTAATATGGA
AATAATGAGC
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protein sequence of jgi.p|Nanoce1779_2|578830

>mRNA_2039-protein ID=mRNA_2039-protein|Name=jgi.p|Nanoce1779_2|578830|organism=Nannochloropsis oceanica|type=polypeptide|length=422bp
MAPRLSSRRGSIMRAQAVLALACSCSCTRAFVGPPPPPPPFDSSVGPLYG
GRIFDGFFNGASSTATSGSSSGRVQLGDLKVSPMGVGTWAWGNQFLWGYS
PQKSDAALQETFDHVLNAGINWFDSADSYGTGRLEGRSEVLLGQFLKEHD
YKRGGGKIRSSDDVYVATKIAPYPFRLGKESIKNAMKESSRRLDRGRAGV
DIGQLHWAPPFGWQEKAYWAGLAEMKKEGSIKAIGLSNYGPKKLRQAAET
FRKEHGVCLASNQVQFSLVSTLPVQSGLVEIAASEGVRLIAYSPLGLGVL
TGRYSMEKQRLPEGPRRILFKELLPALAPVLATMDEIASERTRKNQGARG
QRVTHSQIALNWCRSKGAVPIVGLKKLDQAKEATAALEWKLTSAETAALD
AAVASMPRGTGQTVQNIFQTD*
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mRNA from alignment at scaffold_4:622660..624119+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2039 ID=mRNA_2039|Name=jgi.p|Nanoce1779_2|578830|organism=Nannochloropsis oceanica|type=mRNA|length=1460bp|location=Sequence derived from alignment at scaffold_4:622660..624119+ (Nannochloropsis oceanica)
ACAGGGCGCCTTTAGTCCACCGCTTATGGCACCGAGGTTGTCCTCACGGC
GGGGCAGCATTATGCGAGCTCAAGCCGTCCTCGCTCTTGCCTGCAGCTGC
AGCTGTACCCGTGCCTTTGTCGGGCCACCACCACCACCACCGCCATTTGA
CTCGTCCGTGGGTCCGCTGTACGGAGGCCGCATTTTTGATGGTTTCTTCA
ACGGCGCGTCGTCCACCGCCACGAGCGGCAGCAGCAGCGGTCGCGTGCAG
CTTGGCGACCTGAAAGTGAGTCCAATGGGGGTCGGCACTTGGGCGTGGGG
CAATCAGTTCCTCTGGGGCTACTCCCCACAAAAGTCGGATGCGGCCTTGC
AAGAAACATTTGACCACGTCTTGAATGCGGGCATCAATTGGTTTGACTCC
GCTGACTCATATGGAACGGGGAGACTGGAGGGGCGGAGTGAGGTCTTGCT
AGGGCAATTTCTCAAGGAGCACGACTACAAGCGCGGTGGGGGAAAGATAC
GGAGTTCTGATGACGTATACGTGGCTACTAAGATCGCGCCTTACCCCTTC
CGACTAGGCAAGGAAAGTATCAAAAACGCCATGAAAGAGAGCAGTCGAAG
GCTTGACAGGGGAAGAGCGGGTGTTGATATTGGACAGTTGCATTGGGCTC
CCCCATTTGGTTGGCAAGAGAAGGCATATTGGGCAGGCCTTGCTGAAATG
AAAAAAGAGGGGAGTATCAAGGCAATTGGCTTGAGTAATTATGGTCCAAA
AAAGCTACGGCAGGCGGCGGAGACCTTCAGGAAGGAACATGGCGTCTGTC
TCGCCTCCAACCAAGTCCAATTCTCTCTTGTCTCGACATTGCCTGTGCAG
AGCGGCTTGGTTGAAATAGCAGCCAGCGAGGGAGTGCGCCTCATTGCTTA
TAGTCCTTTAGGATTGGGAGTTTTGACGGGAAGGTATAGCATGGAGAAGC
AGCGGTTACCGGAAGGGCCCCGTCGCATTTTGTTCAAAGAGCTCCTTCCG
GCGTTGGCCCCCGTCCTGGCCACCATGGACGAGATTGCGTCTGAACGAAC
CCGTAAAAACCAAGGTGCGCGAGGGCAGCGTGTGACGCATTCACAAATTG
CGTTAAACTGGTGTCGGTCGAAAGGAGCAGTGCCAATCGTGGGGCTGAAA
AAATTAGATCAAGCGAAAGAAGCAACCGCTGCACTGGAGTGGAAATTGAC
CTCGGCAGAAACGGCAGCGTTGGATGCGGCAGTCGCGAGCATGCCCCGGG
GGACAGGACAAACAGTGCAAAATATATTCCAGACCGATTGAAAAAAAATG
GGGAGAAGCGGAAATAAATGAAGTAGGCAAAAGAAATAAATGATGAACAT
ACATGAATACACCTGCACAGAGTAGTCTTGCTGCTCGTACTTTGTAGTCT
TCTTCAAAGGTAAAATGTTGGGAACAAAACATGTCACAAAGTAATATGGA
AATAATGAGC
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Coding sequence (CDS) from alignment at scaffold_4:622660..624119+

>mRNA_2039 ID=mRNA_2039|Name=jgi.p|Nanoce1779_2|578830|organism=Nannochloropsis oceanica|type=CDS|length=1266bp|location=Sequence derived from alignment at scaffold_4:622660..624119+ (Nannochloropsis oceanica)
ATGGCACCGAGGTTGTCCTCACGGCGGGGCAGCATTATGCGAGCTCAAGC
CGTCCTCGCTCTTGCCTGCAGCTGCAGCTGTACCCGTGCCTTTGTCGGGC
CACCACCACCACCACCGCCATTTGACTCGTCCGTGGGTCCGCTGTACGGA
GGCCGCATTTTTGATGGTTTCTTCAACGGCGCGTCGTCCACCGCCACGAG
CGGCAGCAGCAGCGGTCGCGTGCAGCTTGGCGACCTGAAAGTGAGTCCAA
TGGGGGTCGGCACTTGGGCGTGGGGCAATCAGTTCCTCTGGGGCTACTCC
CCACAAAAGTCGGATGCGGCCTTGCAAGAAACATTTGACCACGTCTTGAA
TGCGGGCATCAATTGGTTTGACTCCGCTGACTCATATGGAACGGGGAGAC
TGGAGGGGCGGAGTGAGGTCTTGCTAGGGCAATTTCTCAAGGAGCACGAC
TACAAGCGCGGTGGGGGAAAGATACGGAGTTCTGATGACGTATACGTGGC
TACTAAGATCGCGCCTTACCCCTTCCGACTAGGCAAGGAAAGTATCAAAA
ACGCCATGAAAGAGAGCAGTCGAAGGCTTGACAGGGGAAGAGCGGGTGTT
GATATTGGACAGTTGCATTGGGCTCCCCCATTTGGTTGGCAAGAGAAGGC
ATATTGGGCAGGCCTTGCTGAAATGAAAAAAGAGGGGAGTATCAAGGCAA
TTGGCTTGAGTAATTATGGTCCAAAAAAGCTACGGCAGGCGGCGGAGACC
TTCAGGAAGGAACATGGCGTCTGTCTCGCCTCCAACCAAGTCCAATTCTC
TCTTGTCTCGACATTGCCTGTGCAGAGCGGCTTGGTTGAAATAGCAGCCA
GCGAGGGAGTGCGCCTCATTGCTTATAGTCCTTTAGGATTGGGAGTTTTG
ACGGGAAGGTATAGCATGGAGAAGCAGCGGTTACCGGAAGGGCCCCGTCG
CATTTTGTTCAAAGAGCTCCTTCCGGCGTTGGCCCCCGTCCTGGCCACCA
TGGACGAGATTGCGTCTGAACGAACCCGTAAAAACCAAGGTGCGCGAGGG
CAGCGTGTGACGCATTCACAAATTGCGTTAAACTGGTGTCGGTCGAAAGG
AGCAGTGCCAATCGTGGGGCTGAAAAAATTAGATCAAGCGAAAGAAGCAA
CCGCTGCACTGGAGTGGAAATTGACCTCGGCAGAAACGGCAGCGTTGGAT
GCGGCAGTCGCGAGCATGCCCCGGGGGACAGGACAAACAGTGCAAAATAT
ATTCCAGACCGATTGA
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Synonyms
Publications