jgi.p|Nanoce1779_2|578387, mRNA_1912 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578387
Unique NamemRNA_1912
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length449
Alignment locationscaffold_4:330486..330934 -

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Properties
Property NameValue
TranscriptId578473
TrackFilteredModels2
ProteinId578387
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:330486..330934 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578387gene_1912Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578387mRNA_1912-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1912CDS_1912Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1912 ID=mRNA_1912|Name=jgi.p|Nanoce1779_2|578387|organism=Nannochloropsis oceanica|type=mRNA|length=449bp
TTGCCAGCACCCGCGAGCGTTGTCCATTCCTTCTTCGTGAAATGTATGTC
TGCATTTGTGCTTCATTCACCCCCTCTGCTTTCCCTTCCCGGCTTTGAGC
GCGGGGCCTCCGTCATCAGTGCAACTAAATGTCTTCCTTTTATACATAAA
ATATCATCTATCTTGTTCAGATCCTGTGTGTCTTTACTCTTGGTCATCAT
CCTTCTCTTATTCATTCATAATCTTCGGTTCTCATACATCTTAATTCCTC
CCTCCCCCCTCCTCCTCCATTTTCCTCTTTTACTTATTCTCCCTCCTGTT
TCTGCCTTTTTCTTGATTTCTCTCTTTTTCTTTTTTGTCTTCCTTCTCTA
TACACAGTTGTTATCATTATACCTATAAACTTGCCAGCTCTTGTGTCGGA
CCACCCTCCCTCCCTCCCTCCCTCTTCTCGATCACCGTGCATTCCGACT
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protein sequence of jgi.p|Nanoce1779_2|578387

>mRNA_1912-protein ID=mRNA_1912-protein|Name=jgi.p|Nanoce1779_2|578387|organism=Nannochloropsis oceanica|type=polypeptide|length=111bp
MSAFVLHSPPLLSLPGFERGASVISATKCLPFIHKISSILFRSCVSLLLV
IILLLFIHNLRFSYILIPPSPLLLHFPLLLILPPVSAFFLISLFFFFVFL
LYTQLLSLYL*
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mRNA from alignment at scaffold_4:330486..330934-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1912 ID=mRNA_1912|Name=jgi.p|Nanoce1779_2|578387|organism=Nannochloropsis oceanica|type=mRNA|length=449bp|location=Sequence derived from alignment at scaffold_4:330486..330934- (Nannochloropsis oceanica)
TTGCCAGCACCCGCGAGCGTTGTCCATTCCTTCTTCGTGAAATGTATGTC
TGCATTTGTGCTTCATTCACCCCCTCTGCTTTCCCTTCCCGGCTTTGAGC
GCGGGGCCTCCGTCATCAGTGCAACTAAATGTCTTCCTTTTATACATAAA
ATATCATCTATCTTGTTCAGATCCTGTGTGTCTTTACTCTTGGTCATCAT
CCTTCTCTTATTCATTCATAATCTTCGGTTCTCATACATCTTAATTCCTC
CCTCCCCCCTCCTCCTCCATTTTCCTCTTTTACTTATTCTCCCTCCTGTT
TCTGCCTTTTTCTTGATTTCTCTCTTTTTCTTTTTTGTCTTCCTTCTCTA
TACACAGTTGTTATCATTATACCTATAAACTTGCCAGCTCTTGTGTCGGA
CCACCCTCCCTCCCTCCCTCCCTCTTCTCGATCACCGTGCATTCCGACT
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Coding sequence (CDS) from alignment at scaffold_4:330486..330934-

>mRNA_1912 ID=mRNA_1912|Name=jgi.p|Nanoce1779_2|578387|organism=Nannochloropsis oceanica|type=CDS|length=333bp|location=Sequence derived from alignment at scaffold_4:330486..330934- (Nannochloropsis oceanica)
ATGTCTGCATTTGTGCTTCATTCACCCCCTCTGCTTTCCCTTCCCGGCTT
TGAGCGCGGGGCCTCCGTCATCAGTGCAACTAAATGTCTTCCTTTTATAC
ATAAAATATCATCTATCTTGTTCAGATCCTGTGTGTCTTTACTCTTGGTC
ATCATCCTTCTCTTATTCATTCATAATCTTCGGTTCTCATACATCTTAAT
TCCTCCCTCCCCCCTCCTCCTCCATTTTCCTCTTTTACTTATTCTCCCTC
CTGTTTCTGCCTTTTTCTTGATTTCTCTCTTTTTCTTTTTTGTCTTCCTT
CTCTATACACAGTTGTTATCATTATACCTATAA
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Synonyms
Publications