jgi.p|Nanoce1779_2|578729, mRNA_2009 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578729
Unique NamemRNA_2009
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length965
Alignment locationscaffold_4:553499..555258 +

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Properties
Property NameValue
TranscriptId578815
TrackFilteredModels2
ProteinId578729
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:553499..555258 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578729gene_2009Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578729mRNA_2009-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2009CDS_2009Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2009 ID=mRNA_2009|Name=jgi.p|Nanoce1779_2|578729|organism=Nannochloropsis oceanica|type=mRNA|length=965bp
AGGCCGCGCCCCTACATCTACACCCTCTCTTACTCTCTATTAGGATGGCT
CGTTCCCGCAGCAGCCGCCCTGCCCCCTCCCGCGCCCCTGCCCGCGCTCC
CTCCCGCTCCGTGCCGGCGGCGCCCCAGCGCTCTGCGCCCCCTGCCCCGC
AGCAATCCCAGCAAAGCGGCGGGATGATGAGCGGTTTCGCCTCCACTATT
GCCCAGGGCTTTGCCTTCGGCACAGGCAGCGCTGTCGCTCACCGGGCGGT
CGGTGCGGCCGCTGGCGCCTTCTCCGGCGACAGCGAGGCGCCTCAGCATC
ATGAGACCCACCCTCAGCAGGTAATGCAACAGCAGCAGCATGCTTACGGT
GCCCCCGCGGGGCAACAGGCCTGCTCTTTGGATGGCCAGAACTTCCAGGC
GTGCTTGCAGGCTAACCCCGGGAACGTTGACGCGTGCACTTTCTTGTATG
AAGCCTTACAGCAGTGCCAGCGCAACTCGCAGTTCCAGTAAGGATATATA
AACTAGGTGGATAGATTTGGAAGAGGGTGGTGAGGGGGGGGGGAAGGAGG
AGGAAGGGGAAGAGGTGGTTGGAGGAGGCCGAGGAGAAAGAATAGTATAA
CGGGCCTCTGGTTGATAATTAAGCATTATGAGCTGATAGAGAACGAATGG
CGGGGTACTTGGGTAACACGTGCGTGTCCCGAGACGTATCGCATCGCCGT
TCATATCTTAGTCTTTTTATCTCACAAGTATGCCGCTGCGGATGAGAGAG
TGTCGAGAGATGGGTGAGCAGCAATGATTATACAAAATAGGCGAGGGAGT
GGAGGGAAACTGGTTGTTGACAAACTTACAAGATACAAACTCATAGGGGA
AAAAAAGAAAAACCCATCTAGTAATATTGATTTCGTCTGGTTCTCGGGAG
CTCCAGCCAGGCAACGAGTCATGTAGTGAATGTGCATGCGCGGATGCTTG
TGTGCTTTGTCTCGG
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protein sequence of jgi.p|Nanoce1779_2|578729

>mRNA_2009-protein ID=mRNA_2009-protein|Name=jgi.p|Nanoce1779_2|578729|organism=Nannochloropsis oceanica|type=polypeptide|length=149bp
MARSRSSRPAPSRAPARAPSRSVPAAPQRSAPPAPQQSQQSGGMMSGFAS
TIAQGFAFGTGSAVAHRAVGAAAGAFSGDSEAPQHHETHPQQVMQQQQHA
YGAPAGQQACSLDGQNFQACLQANPGNVDACTFLYEALQQCQRNSQFQ*
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mRNA from alignment at scaffold_4:553499..555258+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2009 ID=mRNA_2009|Name=jgi.p|Nanoce1779_2|578729|organism=Nannochloropsis oceanica|type=mRNA|length=1760bp|location=Sequence derived from alignment at scaffold_4:553499..555258+ (Nannochloropsis oceanica)
AGGCCGCGCCCCTACATCTACACCCTCTCTTACTCTCTATTAGGATGGCT
CGGTAAGTTTCGTTTAAGTATATCCGTGCGCGGTGGGTCTAGTGAGGGGA
AGGGGAGTTGCGGAGGGGAGATCATTTCTCGAAAGGATTCAACAAGGAGG
GTGGGGGATTGGCTGTGCGGTACATTAGGTGAGACCCTACACAGTGTGCC
GTTCTGCGTTAAGACAGCAAGGTGGTGTGAAGCTGGGTTAGGGATGGGGG
ATGGGGCTGGGGTTGGACGCTGCACAAGGCACGGGGACGTTGGTCCTCCC
TTTCCCGCTTCCCTCTTTCCACCTGTTCATGCACAAGCGACCACACCACA
CATTCTTGACTTCTAACGGCGCACTTACTCTACCCGACGATTAAGGCGAC
ATGCGGACTCACTCACCCCCGTTCTCTATTCCCTCGTCTTGTCTTAACAG
TTCCCGCAGCAGCCGCCCTGCCCCCTCCCGCGCCCCTGCCCGCGCTCCCT
CCCGCTCCGTGCCGGCGGCGCCCCAGCGGTACGTGTGTTATGTTAAAACT
AGGAAGAATGCATGCAGCTAGCACAATATTTCGCACATGTACTCAGCGCG
TGGAGGGTGATGCACTCACCTTTCCCATGGCTTTTTCGTGTACATTCGTC
TCATACATTCACAGCTCTGCGCCCCCTGCCCCGCAGCAATCCCAGCAAAG
TACGTACCTGCTGCATCAAGTCTGCATACCAAGCTCATGTCTCTTTTTAT
CCAATCCCCGTTCCCCGTTCTTTCTTCATGACCAACGCCCTTTTACTCAC
ACATCTCTCCTTTGCCTCCTTTCCTCGTCGCAGGCGGCGGGATGATGAGC
GGTTTCGCCTCCACTATTGCCCAGGGCTTTGCCTTCGGCACAGGCAGCGC
TGTCGCTCACCGGGTATGTGTTTGGTCGAGAATGATGTTGAAATATTAGC
GTTGAGGGATTGCTTTAAGACTCCACCCTGACCTTCTCTTGTGTTTCGCT
GTCTAACCTTCCCTCCCCCTCGTCTCTTTCTTTCCAACAGGCGGTCGGTG
CGGCCGCTGGCGCCTTCTCCGGCGACAGCGAGGCGCCTCAGCATCATGAG
ACCCACCCTCAGCAGGTAATGCAACAGCAGCAGCATGCTTACGGTGCCCC
CGCGGGGCAACAGGCCTGCTCTTTGGATGGCCAGAACTTCCAGGCGTGCT
TGCAGGCTAACCCCGGGAACGTTGACGCGTGCACTTTCTTGTATGAAGCC
TTACAGCAGTGCCAGCGCAACTCGCAGTTCCAGTAAGGATATATAAACTA
GGTGGATAGATTTGGAAGAGGGTGGTGAGGGGGGGGGGAAGGAGGAGGAA
GGGGAAGAGGTGGTTGGAGGAGGCCGAGGAGAAAGAATAGTATAACGGGC
CTCTGGTTGATAATTAAGCATTATGAGCTGATAGAGAACGAATGGCGGGG
TACTTGGGTAACACGTGCGTGTCCCGAGACGTATCGCATCGCCGTTCATA
TCTTAGTCTTTTTATCTCACAAGTATGCCGCTGCGGATGAGAGAGTGTCG
AGAGATGGGTGAGCAGCAATGATTATACAAAATAGGCGAGGGAGTGGAGG
GAAACTGGTTGTTGACAAACTTACAAGATACAAACTCATAGGGGAAAAAA
AGAAAAACCCATCTAGTAATATTGATTTCGTCTGGTTCTCGGGAGCTCCA
GCCAGGCAACGAGTCATGTAGTGAATGTGCATGCGCGGATGCTTGTGTGC
TTTGTCTCGG
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Coding sequence (CDS) from alignment at scaffold_4:553499..555258+

>mRNA_2009 ID=mRNA_2009|Name=jgi.p|Nanoce1779_2|578729|organism=Nannochloropsis oceanica|type=CDS|length=2235bp|location=Sequence derived from alignment at scaffold_4:553499..555258+ (Nannochloropsis oceanica)
ATGGCTCGTTCCCGCAGCAGCCGCCCTGCCCCCTCCCGCGCCCCTGCCCG
CGCTCCCTCCCGCTCCGTGCCGGCGGCGCCCCAGCGCTCTGCGCCCCCTG
CCCCGCAGCAATCCCAGCAAAGCGGCGGGATGATGAGCGGTTTCGCCTCC
ACTATTGCCCAGGGCTTTGCCTTCGGCACAGGCAGCGCTGTCGCTCACCG
GGCGGTCGGTGCGGCCGCTGGCGCCTTCTCCGGCGACAGCGAGGCGCCTC
AGCATCATGAGACCCACCCTCAGCAGGTAATGCAACAGCAGCAGCATGCT
TACGGTGCCCCCGCGGGGCAACAGGCCTGCTCTTTGGATGGCCAGAACTT
CCAGGCGTGCTTGCAGGCTAACCCCGGGAACGTTGACGCGTGCACTTTCT
TGTATGAAGCCTTACAGCAGTGCCAGCGCAACTCGCAGTTCCAGTAAATG
GCTCGTTCCCGCAGCAGCCGCCCTGCCCCCTCCCGCGCCCCTGCCCGCGC
TCCCTCCCGCTCCGTGCCGGCGGCGCCCCAGCGCTCTGCGCCCCCTGCCC
CGCAGCAATCCCAGCAAAGCGGCGGGATGATGAGCGGTTTCGCCTCCACT
ATTGCCCAGGGCTTTGCCTTCGGCACAGGCAGCGCTGTCGCTCACCGGGC
GGTCGGTGCGGCCGCTGGCGCCTTCTCCGGCGACAGCGAGGCGCCTCAGC
ATCATGAGACCCACCCTCAGCAGGTAATGCAACAGCAGCAGCATGCTTAC
GGTGCCCCCGCGGGGCAACAGGCCTGCTCTTTGGATGGCCAGAACTTCCA
GGCGTGCTTGCAGGCTAACCCCGGGAACGTTGACGCGTGCACTTTCTTGT
ATGAAGCCTTACAGCAGTGCCAGCGCAACTCGCAGTTCCAGTAAATGGCT
CGTTCCCGCAGCAGCCGCCCTGCCCCCTCCCGCGCCCCTGCCCGCGCTCC
CTCCCGCTCCGTGCCGGCGGCGCCCCAGCGCTCTGCGCCCCCTGCCCCGC
AGCAATCCCAGCAAAGCGGCGGGATGATGAGCGGTTTCGCCTCCACTATT
GCCCAGGGCTTTGCCTTCGGCACAGGCAGCGCTGTCGCTCACCGGGCGGT
CGGTGCGGCCGCTGGCGCCTTCTCCGGCGACAGCGAGGCGCCTCAGCATC
ATGAGACCCACCCTCAGCAGGTAATGCAACAGCAGCAGCATGCTTACGGT
GCCCCCGCGGGGCAACAGGCCTGCTCTTTGGATGGCCAGAACTTCCAGGC
GTGCTTGCAGGCTAACCCCGGGAACGTTGACGCGTGCACTTTCTTGTATG
AAGCCTTACAGCAGTGCCAGCGCAACTCGCAGTTCCAGTAAATGGCTCGT
TCCCGCAGCAGCCGCCCTGCCCCCTCCCGCGCCCCTGCCCGCGCTCCCTC
CCGCTCCGTGCCGGCGGCGCCCCAGCGCTCTGCGCCCCCTGCCCCGCAGC
AATCCCAGCAAAGCGGCGGGATGATGAGCGGTTTCGCCTCCACTATTGCC
CAGGGCTTTGCCTTCGGCACAGGCAGCGCTGTCGCTCACCGGGCGGTCGG
TGCGGCCGCTGGCGCCTTCTCCGGCGACAGCGAGGCGCCTCAGCATCATG
AGACCCACCCTCAGCAGGTAATGCAACAGCAGCAGCATGCTTACGGTGCC
CCCGCGGGGCAACAGGCCTGCTCTTTGGATGGCCAGAACTTCCAGGCGTG
CTTGCAGGCTAACCCCGGGAACGTTGACGCGTGCACTTTCTTGTATGAAG
CCTTACAGCAGTGCCAGCGCAACTCGCAGTTCCAGTAAATGGCTCGTTCC
CGCAGCAGCCGCCCTGCCCCCTCCCGCGCCCCTGCCCGCGCTCCCTCCCG
CTCCGTGCCGGCGGCGCCCCAGCGCTCTGCGCCCCCTGCCCCGCAGCAAT
CCCAGCAAAGCGGCGGGATGATGAGCGGTTTCGCCTCCACTATTGCCCAG
GGCTTTGCCTTCGGCACAGGCAGCGCTGTCGCTCACCGGGCGGTCGGTGC
GGCCGCTGGCGCCTTCTCCGGCGACAGCGAGGCGCCTCAGCATCATGAGA
CCCACCCTCAGCAGGTAATGCAACAGCAGCAGCATGCTTACGGTGCCCCC
GCGGGGCAACAGGCCTGCTCTTTGGATGGCCAGAACTTCCAGGCGTGCTT
GCAGGCTAACCCCGGGAACGTTGACGCGTGCACTTTCTTGTATGAAGCCT
TACAGCAGTGCCAGCGCAACTCGCAGTTCCAGTAA
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Synonyms
Publications