jgi.p|Nanoce1779_2|579396, mRNA_2186 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579396
Unique NamemRNA_2186
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length655
Alignment locationscaffold_4:995898..996851 +

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Properties
Property NameValue
TranscriptId579482
TrackFilteredModels2
ProteinId579396
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:995898..996851 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579396gene_2186Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579396mRNA_2186-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2186CDS_2186Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2186 ID=mRNA_2186|Name=jgi.p|Nanoce1779_2|579396|organism=Nannochloropsis oceanica|type=mRNA|length=655bp
AAGATGCCGCAAAGCGGCGCCATCACTTCGCAGCAGCAAGCCACTCTCGA
CGCCTCCACCAAGAAGCAGCAGCAGCAGCAGCAACCTTCAGACGACTTGG
GAGCGATGGCAATATTCCAAAAGGCCCTAATTTATCGAGGCAATTGGAAT
AAGGAGACCTTTCCCGAGTTCTTGGACGTCATCTACTGGCTCCGACAGAT
GCTGGCGTTAATCATTGGACTCGTATGGGGTCGAGCTCCGTCACTGGGAG
GGCCTGCGATCATGTCATTTGTTGGTTTGGAACTTATGCTTCCTCGAATG
TACTACCAAAAATGGGCGAGTGTGGATGAGGATGATTTTGATGCCGTGGC
GCTCCTGAAGGAAGGTTTACAATCAGCAGCCGGTGTGTTTTTTGCAACGT
GGGTGCTGACCTACACAATCTGTCATAATGCGAGTTTTGAGAAGGCGGCG
GCAGCGGCCGCAGATGCAGCAGCTGCAGGTGGCGCAGGGCCTTGAGGAGT
GAGAGGGACGAGGATTAGATGATAATGCTTTCTTAGGGGGAAGTAGATGG
ACGGTGGATTTGGGAGAAAAGAGGAGGAGAGGGAACAAGAGGCTGAGGAA
AAGAAGGAAGGGGAAGGAGGAGGAGGAGGAGGAGGAGGAGGGGGGCAGAG
GAGGA
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protein sequence of jgi.p|Nanoce1779_2|579396

>mRNA_2186-protein ID=mRNA_2186-protein|Name=jgi.p|Nanoce1779_2|579396|organism=Nannochloropsis oceanica|type=polypeptide|length=164bp
MPQSGAITSQQQATLDASTKKQQQQQQPSDDLGAMAIFQKALIYRGNWNK
ETFPEFLDVIYWLRQMLALIIGLVWGRAPSLGGPAIMSFVGLELMLPRMY
YQKWASVDEDDFDAVALLKEGLQSAAGVFFATWVLTYTICHNASFEKAAA
AAADAAAAGGAGP*
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mRNA from alignment at scaffold_4:995898..996851+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2186 ID=mRNA_2186|Name=jgi.p|Nanoce1779_2|579396|organism=Nannochloropsis oceanica|type=mRNA|length=954bp|location=Sequence derived from alignment at scaffold_4:995898..996851+ (Nannochloropsis oceanica)
AAGATGCCGCAAAGCGGCGCCATCACTTCGCAGCAGCAAGCCACTCTCGA
CGCCTCCACCAAGAAGCAGCAGCAGCAGCAGCAACCTTCAGACGACTTGG
GAGCGATGGCAATATTCCAAAAGGCCCTAATTTATCGAGGCAATTGGAAT
AAGGTATGTCTGGGTGTGTGCACGGTAGAATTGAGTCAATGGTGGCGTGC
CCTCAGTCACTCAGGATTCACATATCCCTACTTATTCCTGGGCACACAGG
AGACCTTTCCCGAGTTCTTGGACGTCATCTACTGGCTCCGACAGATGCTG
GCGTTAATCATTGGACTCGTATGGGGTCGAGCTCCGTCACTGGGAGGGCC
TGCGATCATGTCATTTGTTGGTTTGGTAAAAGTTGAAGAAATGAGGGGAG
GGAGGGATGAAGGGAGGGAAGGTTGAGGGCATGTCAGCCCGTTTCTCGCT
TGCGCATTATCTTGTGCTTCCTCGGATTGACCGAATGAGGCTAATTCTAA
CGCCGTAACTCTACCAAAGGGAGTGTCGCACTTACTTTATTCCTCCTTCT
CTTTCTCCTTCCCTCCGTTCCCCCTCAGGAACTTATGCTTCCTCGAATGT
ACTACCAAAAATGGGCGAGTGTGGATGAGGATGATTTTGATGCCGTGGCG
CTCCTGAAGGAAGGTTTACAATCAGCAGCCGGTGTGTTTTTTGCAACGTG
GGTGCTGACCTACACAATCTGTCATAATGCGAGTTTTGAGAAGGCGGCGG
CAGCGGCCGCAGATGCAGCAGCTGCAGGTGGCGCAGGGCCTTGAGGAGTG
AGAGGGACGAGGATTAGATGATAATGCTTTCTTAGGGGGAAGTAGATGGA
CGGTGGATTTGGGAGAAAAGAGGAGGAGAGGGAACAAGAGGCTGAGGAAA
AGAAGGAAGGGGAAGGAGGAGGAGGAGGAGGAGGAGGAGGGGGGCAGAGG
AGGA
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Coding sequence (CDS) from alignment at scaffold_4:995898..996851+

>mRNA_2186 ID=mRNA_2186|Name=jgi.p|Nanoce1779_2|579396|organism=Nannochloropsis oceanica|type=CDS|length=1476bp|location=Sequence derived from alignment at scaffold_4:995898..996851+ (Nannochloropsis oceanica)
ATGCCGCAAAGCGGCGCCATCACTTCGCAGCAGCAAGCCACTCTCGACGC
CTCCACCAAGAAGCAGCAGCAGCAGCAGCAACCTTCAGACGACTTGGGAG
CGATGGCAATATTCCAAAAGGCCCTAATTTATCGAGGCAATTGGAATAAG
GAGACCTTTCCCGAGTTCTTGGACGTCATCTACTGGCTCCGACAGATGCT
GGCGTTAATCATTGGACTCGTATGGGGTCGAGCTCCGTCACTGGGAGGGC
CTGCGATCATGTCATTTGTTGGTTTGGAACTTATGCTTCCTCGAATGTAC
TACCAAAAATGGGCGAGTGTGGATGAGGATGATTTTGATGCCGTGGCGCT
CCTGAAGGAAGGTTTACAATCAGCAGCCGGTGTGTTTTTTGCAACGTGGG
TGCTGACCTACACAATCTGTCATAATGCGAGTTTTGAGAAGGCGGCGGCA
GCGGCCGCAGATGCAGCAGCTGCAGGTGGCGCAGGGCCTTGAATGCCGCA
AAGCGGCGCCATCACTTCGCAGCAGCAAGCCACTCTCGACGCCTCCACCA
AGAAGCAGCAGCAGCAGCAGCAACCTTCAGACGACTTGGGAGCGATGGCA
ATATTCCAAAAGGCCCTAATTTATCGAGGCAATTGGAATAAGGAGACCTT
TCCCGAGTTCTTGGACGTCATCTACTGGCTCCGACAGATGCTGGCGTTAA
TCATTGGACTCGTATGGGGTCGAGCTCCGTCACTGGGAGGGCCTGCGATC
ATGTCATTTGTTGGTTTGGAACTTATGCTTCCTCGAATGTACTACCAAAA
ATGGGCGAGTGTGGATGAGGATGATTTTGATGCCGTGGCGCTCCTGAAGG
AAGGTTTACAATCAGCAGCCGGTGTGTTTTTTGCAACGTGGGTGCTGACC
TACACAATCTGTCATAATGCGAGTTTTGAGAAGGCGGCGGCAGCGGCCGC
AGATGCAGCAGCTGCAGGTGGCGCAGGGCCTTGAATGCCGCAAAGCGGCG
CCATCACTTCGCAGCAGCAAGCCACTCTCGACGCCTCCACCAAGAAGCAG
CAGCAGCAGCAGCAACCTTCAGACGACTTGGGAGCGATGGCAATATTCCA
AAAGGCCCTAATTTATCGAGGCAATTGGAATAAGGAGACCTTTCCCGAGT
TCTTGGACGTCATCTACTGGCTCCGACAGATGCTGGCGTTAATCATTGGA
CTCGTATGGGGTCGAGCTCCGTCACTGGGAGGGCCTGCGATCATGTCATT
TGTTGGTTTGGAACTTATGCTTCCTCGAATGTACTACCAAAAATGGGCGA
GTGTGGATGAGGATGATTTTGATGCCGTGGCGCTCCTGAAGGAAGGTTTA
CAATCAGCAGCCGGTGTGTTTTTTGCAACGTGGGTGCTGACCTACACAAT
CTGTCATAATGCGAGTTTTGAGAAGGCGGCGGCAGCGGCCGCAGATGCAG
CAGCTGCAGGTGGCGCAGGGCCTTGA
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Synonyms
Publications