Properties
| Property Name | Value |
|---|
| TranscriptId | 628109 |
| Track | FilteredModels2 |
| ProteinId | 628023 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_4 | supercontig | scaffold_4:61694..65430 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1811 ID=mRNA_1811|Name=jgi.p|Nanoce1779_2|628023|organism=Nannochloropsis oceanica|type=mRNA|length=2127bp
CCGTGTGCCACCAGACCTTGCCGGGGGACTCAAGCTTGTCAACGTCAGTC
CTGTTTAATTATGTCATGAAGGGATTAGCGCGTATGGTGGGTACCGGGTT
GATATCTGGAGGGATGCCCGGCAAGCTGGCACCTGATCGAGCGCTCGCCG
CGGTCCCGCCAACAGGATGAATCATCTATCATGATTCATGAATCAACGCA
TCTCTTCAACCGGAGCACAACGGGTAACCGCACACAGCGATATAAATTAC
ACAGTAGAGACTTAAAGGGGGTATAGTCTGTGGTGGGAAGGAGCTGCTGC
AGGATCAAGCGCTCCACCTGCGTGTGCAAGGCTTGCTAAGCTCAAAATGC
CTGTGTGCCAGCCATAGGCAGAGCTAGTTGTGAGAGCCAAAGTCAACCAG
CATTGCCTATTTATTGGGCCAGATAATTGCAGGCACGAAAAATAAACATT
GGACAATTTTATGCAGCACATTTATCAAAGGGTGAGGGCCACGGGATGAC
CAAATTTGCAGATTACAACCATGCTTTGTGTTGTGCCTGTGCCCCATATC
TCACCTTCCACGAATCAACCGGTCACATTCAGTCGTTGCCTTCGATCACA
TTTTCCAGTTCATCGCAACCCACACAGAAACAAAATCCAATAGAGGAGCC
ACAAAAAATAATGTTCATGCAACAAAGCCTGTGTGAAGAAGCAAGGCGTC
GCCTCCACCACCCTATAGACGCCAGCGTAGGTCCTGGGGCCCATTCTCGC
CTGCATTACATCCTTCCAGTCTGCCTTGTTCGAAGAGCTAGACATGGACG
CCGCTCTCACCACCCTAGCCTTTTCTTCAGAGACGTCGATGTTCGACAAC
CATTTCCTTATATACCGCGTGGCCCCAACACAAGCAAGCTTTAGATAGGA
GGGGAAAGTCGGCCATGGCAGCTGCGGCTTTGTGATGGTGTAATTTATTG
AACATGGAAACTGACTGGAGATTTCCCCACGGTGATAATTATTAAGTCGT
TACTACAAAATTTGTTCATAACAACCACTTGCCAATTTCTGGCATGTTTT
ATAACTTATACTTTTGTAAACCGAATCGGAGACCAATGTGGAATGACGAG
CTTTTCGCGCTGCGGTGGCTGCTGCAAGAAGCATTTCACATTCCAATTTG
CATTCCACACGCCAGTAGAAGGACACGGCAAGGAGAAATACTTTGGGAGG
ATAAAATTAAGGGAGGTCTGGAAGGATAAGAAAAAAAAAGAGGTTAGAAG
ACTGGTGCTGCAGCTCAATCACGAAAATCGCCAGTTGTTCTTCAGCGACG
AATGGCCTCAGAAGACGGGACACTGAATTGTACCACCACTCAAGCCCACT
CCATTTCCCTCTTCACCCTCCTCCCTCACCAGGCTTTGTACTCATATTCG
AGCAGTGGTGTCTTCTTTCCTCCATTCCGTTCTCCATTTACTAAGCGCGC
AAGAAGGCGGGGAGCGAAAGCTCAACGCCATCATCGTTATGGCGGAGGCA
GCGTCTACACCCGGGAGCGATTTGCCCATCTCGGACCAGACGTCCAAGGA
AGAGTCCCTTCGAGAGATGGGGGAGTGGGCGGCCCGGTACGAGATGATAG
CTGCCATGGGCTACTTGGCCGCGCTATTGATGGTAGGCAAGGCCTTACAC
AACTTGGGAAAGATTGCAAAGTTCCGGTTCACCCCTCCCTCCGCCGTTAT
CTCGGGTTTTCTGGGCTTGGGTCTCTATGACATCATGGGGGCTTGCTCGA
AGCTCCTGCAGGTGGAGCTGGAGTCTAGCTTGCGGTCGATTGAAGTGAAC
ATCGTCAACTTCGTCTTCACATCCCTCATCTTGGGCTTCACCAGCGGAAC
CAAGAAAACTAAGATGACCTACAAGAGGATCTTCGGCCTGATTTTCCACG
AGGGCATGCCTATGCTCCTCTACGCACAGGCGCTCATTTGGGGGCGGACT
CGGCCGGCCTGACCATCTCCATCCTGGTCGGCGTCATCCTCGTCGCCTGC
CGCAGGGTCTCGCCCAACAGGAAAGAGGAATGGTTCGGCATCGGCAGCTG
GCGGAAAGAACGAGGCGGGCAGGGCCCTCTGACAAATCGCGAGCACTTCC
AGCGCCATGTGGGAGGGGGGGAAGGAG back to topprotein sequence of jgi.p|Nanoce1779_2|628023 >mRNA_1811-protein ID=mRNA_1811-protein|Name=jgi.p|Nanoce1779_2|628023|organism=Nannochloropsis oceanica|type=polypeptide|length=158bp
MAEAASTPGSDLPISDQTSKEESLREMGEWAARYEMIAAMGYLAALLMVG
KALHNLGKIAKFRFTPPSAVISGFLGLGLYDIMGACSKLLQVELESSLRS
IEVNIVNFVFTSLILGFTSGTKKTKMTYKRIFGLIFHEGMPMLLYAQALI
WGRTRPA* back to topmRNA from alignment at scaffold_4:61694..65430- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1811 ID=mRNA_1811|Name=jgi.p|Nanoce1779_2|628023|organism=Nannochloropsis oceanica|type=mRNA|length=3737bp|location=Sequence derived from alignment at scaffold_4:61694..65430- (Nannochloropsis oceanica)
CCGTGTGCCACCAGACCTTGCCGGGGGACTCAAGCTTGTCAACGTCAGTC
CTGTTTAATTATGTCATGAAGGGATTAGCGCGTATGGTGGGTACCGGGTT
GATATCTGGAGGGATGCCCGGCAAGCTGGCACCTGATCGAGCGCTCGCCG
CGGTCCCGCCAACAGGATGAATCATCTATCATGATTCATGAATCAACGCA
TCTCTTCAACCGGAGCACAACGGGTAACCGCACACAGCGATATAAATTAC
ACAGTAGAGACTTAAAGGGGGTATAGTCTGTGGTGGGAAGGAGCTGCTGC
AGGATCAAGCGCTCCACCTGCGTGTGCAAGGCTTGCTAAGCTCAAAATGC
CTGTGTGCCAGCCATAGGCAGAGCTAGTTGTGAGAGCCAAAGTCAACCAG
CATTGCCTATTTATTGGGCCAGATAATTGCAGGCACGAAAAATAAACATT
GGACAATTTTATGCAGCACATTTATCAAAGGGTGAGGGCCACGGGATGAC
CAAATTTGCAGATTACAACCATGCTTTGTGTTGTGCCTGTGCCCCATATC
TCACCTTCCACGAATCAACCGGTCACATTCAGTCGTTGCCTTCGATCACA
TTTTCCAGTTCATCGCAACCCACACAGAAACAAAATCCAATAGAGGAGCC
ACAAAAAATAATGTTCATGCAACAAAGCCTGTGTGAAGAAGCAAGGCGTC
GCCTCCACCACCCTATAGACGCCAGCGTAGGTCCTGGGGCCCATTCTCGC
CTGCATTACATCCTTCCAGTCTGCCTTGTTCGAAGAGCTAGACATGGACG
CCGCTCTCACCACCCTAGCCTTTTCTTCAGAGACGTCGATGTTCGACAAC
CATTTCCTTATATACCGCGTGGCCCCAACACAAGCAAGCTTTAGATAGGA
GGGGAAAGTCGGCCATGGCAGCTGCGGCTTTGTGATGGTGTAATTTATTG
AACATGGAAACTGACTGGAGATTTCCCCACGGTGATAATTATTAAGTCGT
TACTACAAAATTTGTTCATAACAACCACTTGCCAATTTCTGGCATGTTTT
ATAACTTATACTTTTGTAAACCGAATCGGAGACCAATGTGGAATGACGAG
CTTTTCGCGCTGCGGTGGCTGCTGCAAGAAGCATTTCACATTCCAATTTG
CATTCCACACGCCAGTAGAAGGACACGGCAAGGAGAAATACTTTGGGAGG
ATAAAATTAAGGGAGGTCTGGAAGGATAAGAAAAAAAAAGAGGTTAGAAG
ACTGGTGCTGCAGCTCAATCACGAAAATCGCCAGTTGTTCTTCAGCGACG
AATGGCCTCAGAAGACGGGACACTGAATTGTACCACCACTCAAGCCCACT
CCATTTCCCTCTTCACCCTCCTCCCTCACCAGGCTTTGTACTCATATTCG
AGCAGTGGTGTCTTCTTTCCTCCATTCCGTTCTCCATTTACTAAGCGCGC
AAGAAGGCGGGGAGCGAAAGCTCAACGCCATCATCGTTATGGCGGAGGCA
GCGTCTACACCCGGGAGCGATTTGCCCATCTCGGACCAGACGTCCAAGGA
AGTAAGTAGCCAGAAAGCAGAGGAAACAGTATTGTGAGAGGGGTCTCCGG
AGGAGGAGGAGAGTTTATTTTGGAGTTGCTCCATGTGCAGCACACTCCCA
GACCTCCTCACCCTCTCTGCACACAACAGGAGTCCCTTCGAGAGATGGGG
GAGTGGGCGGCCCGGTACGAGATGATAGCTGCCATGGGCTACTTGGCCGC
GCTATTGATGGTAGGCAAGGCCTTACACAACTTGGGAAAGATTGCAAAGG
TATGGCAGGTTGGGTAAATGGGGAGTAGGATATGTGGTGGTCACGAGGGT
TGGCCCGGGATGGTGATGTAGGCGAGCGCAAAGCTCATATTACGTCAACC
CCGCTTCCTCCTCTCTATCCTCTTCCATTCCTCTGACACGCTTGCAAGCC
ACCCACTCATTCCAATCCCTCTCCCTTCCTCGCTTGTAGTTCCGGTTCAC
CCCTCCCTCCGCCGTTATCTCGGGTTTTCTGGGCTTGGGTCTCTATGACA
TCATGGGGGCTTGCTCGAAGCTCCTGCAGGTGGAGCTGGAGTCTAGCTTG
CGGTCGATTGAAGTGAACATGTACGTGACAGAGAAGACGCGGCCGAAGGG
AGGGTAAGGGGAAGGTAGGGGGGAAGCGAGGCATGCATCATCTCTACTGT
GTATGGCGTCCATGAGTTTATCTGTGCGGAGGCCCTTCTCCCTCCCACCA
CGATCACCATCCTCCCCACCCCTAGCGTCAACTTCGTCTTCACATCCCTC
ATCTTGGGCTTCACCAGCGGAACCAAGAAAACTAAGGTACGTAGGTAGCC
TTCCCCTGCCCTTCTTCACCATGTCCCTCCGTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCACAGTTCCTCCCTCCCTTCCT
CCTTTCCCAACAGATGACCTACAAGAGGATCTTCGGCCTGATTTTCCACG
AGGGCATGCCTATGCTCCTCTACGCACAGGCGCTCATTTGGGGTGAGGAA
CGCACCAAAATAGGGAGAGGAGGGGGGGAAGAAGGGAAAAAGGGAGGGAG
GGAGGGAGGGAGGAAGGGAGGGGCGAAAGAGAGAGGTGCAAGAAGTGCCT
CACATTTTTGCGTCTGATTCCCTCCCTCCCTTCCTCCGTCCTTCCCTCCT
CCCTTTCTTGCCTCCCTTCCTTCCTTCCTCCGTCCTTCCCTCCTTCTCCC
CCCCCTCCCTCCTCCCCCTCCCAAACAAAGGCAATTCGGTGGTGGCGCTT
CTCATCACAGGCATCTACCGTCTCTGGAACCATGACATATCAGCCTATGA
AGGCGGTCTCGTCACCCTCGGTCAGTCCCTGCCCTCCGTCCCTCCCTTCC
TCCCTCCCTCCCTTCTTGCTCTATCGCCTCCTCACCCCCGCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCAGGCCTGGAAGCCGGGCGTGACAT
CCTCCCTTCCCGCATCAAGTTCAAGGAAGAGTCTCTCGCCGTCGTGCACA
TGGGTGAGAAGGGAGGGAGGGAGGGAGGGAGGGAGCGAGGGACGGTGGGT
GGATGTGGTAGCTTGCATCTGTTTCTCGCACCGTTCTGACCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCTTAGCGGACTCGGCCGGCCTGACCATCTCCA
TCCTGGTCGGCGTCATCCTCGTCGCCTGCCGCAGGGTCTCGCCCAACAGG
TAGGGAGGGAGGGAGGGAGGGAGGGAGGGGAGGATGTAGGGAGGGAGGGA
GGGTTGAGTGTCTACAGTGGGGCGTACGCAGTCGTTCACAAGCACGGCTC
CCCCCCTCCCTCCCTTTCTCTTTCGCGCACGACAGGAAAGAGGAATGGTT
CGGCATCGGCAGCTGGCGGAAAGAACGAGGCGCGTATTTCCCCTCCCTCC
CTCCCTCCCTCCCCCCCCCCTTCCCCCCTCCCTTCCCCTCTCCTTCTAAC
CCTCCTTCCCTCCCTCCCTCTCTCCCTCCCTCTCTCCCTCCCTCCTCCCC
TCCCTCCTCCCCACCCTCCTCCCCTCCTTCTAACCCTCCTTCCCTCGCCC
CCTCCCCTCTCCCTTCTCTTGCAGGCGGGCAGGGCCCTCTGACAAATCGC
GAGCACTTCCAGCGCCATGTGGGAGGGGGGGAAGGAG back to topCoding sequence (CDS) from alignment at scaffold_4:61694..65430- >mRNA_1811 ID=mRNA_1811|Name=jgi.p|Nanoce1779_2|628023|organism=Nannochloropsis oceanica|type=CDS|length=2844bp|location=Sequence derived from alignment at scaffold_4:61694..65430- (Nannochloropsis oceanica)
GCGGACTCGGCCGGCCTGAATGACCTACAAGAGGATCTTCGGCCTGATTT
TCCACGAGGGCATGCCTATGCTCCTCTACGCACAGGCGCTCATTTGGGGC
GTCAACTTCGTCTTCACATCCCTCATCTTGGGCTTCACCAGCGGAACCAA
GAAAACTAAGTTCCGGTTCACCCCTCCCTCCGCCGTTATCTCGGGTTTTC
TGGGCTTGGGTCTCTATGACATCATGGGGGCTTGCTCGAAGCTCCTGCAG
GTGGAGCTGGAGTCTAGCTTGCGGTCGATTGAAGTGAACATGAGTCCCTT
CGAGAGATGGGGGAGTGGGCGGCCCGGTACGAGATGATAGCTGCCATGGG
CTACTTGGCCGCGCTATTGATGGTAGGCAAGGCCTTACACAACTTGGGAA
AGATTGCAAAGATGGCGGAGGCAGCGTCTACACCCGGGAGCGATTTGCCC
ATCTCGGACCAGACGTCCAAGGAAGCGGACTCGGCCGGCCTGAATGACCT
ACAAGAGGATCTTCGGCCTGATTTTCCACGAGGGCATGCCTATGCTCCTC
TACGCACAGGCGCTCATTTGGGGCGTCAACTTCGTCTTCACATCCCTCAT
CTTGGGCTTCACCAGCGGAACCAAGAAAACTAAGTTCCGGTTCACCCCTC
CCTCCGCCGTTATCTCGGGTTTTCTGGGCTTGGGTCTCTATGACATCATG
GGGGCTTGCTCGAAGCTCCTGCAGGTGGAGCTGGAGTCTAGCTTGCGGTC
GATTGAAGTGAACATGAGTCCCTTCGAGAGATGGGGGAGTGGGCGGCCCG
GTACGAGATGATAGCTGCCATGGGCTACTTGGCCGCGCTATTGATGGTAG
GCAAGGCCTTACACAACTTGGGAAAGATTGCAAAGATGGCGGAGGCAGCG
TCTACACCCGGGAGCGATTTGCCCATCTCGGACCAGACGTCCAAGGAAGC
GGACTCGGCCGGCCTGAATGACCTACAAGAGGATCTTCGGCCTGATTTTC
CACGAGGGCATGCCTATGCTCCTCTACGCACAGGCGCTCATTTGGGGCGT
CAACTTCGTCTTCACATCCCTCATCTTGGGCTTCACCAGCGGAACCAAGA
AAACTAAGTTCCGGTTCACCCCTCCCTCCGCCGTTATCTCGGGTTTTCTG
GGCTTGGGTCTCTATGACATCATGGGGGCTTGCTCGAAGCTCCTGCAGGT
GGAGCTGGAGTCTAGCTTGCGGTCGATTGAAGTGAACATGAGTCCCTTCG
AGAGATGGGGGAGTGGGCGGCCCGGTACGAGATGATAGCTGCCATGGGCT
ACTTGGCCGCGCTATTGATGGTAGGCAAGGCCTTACACAACTTGGGAAAG
ATTGCAAAGATGGCGGAGGCAGCGTCTACACCCGGGAGCGATTTGCCCAT
CTCGGACCAGACGTCCAAGGAAGCGGACTCGGCCGGCCTGAATGACCTAC
AAGAGGATCTTCGGCCTGATTTTCCACGAGGGCATGCCTATGCTCCTCTA
CGCACAGGCGCTCATTTGGGGCGTCAACTTCGTCTTCACATCCCTCATCT
TGGGCTTCACCAGCGGAACCAAGAAAACTAAGTTCCGGTTCACCCCTCCC
TCCGCCGTTATCTCGGGTTTTCTGGGCTTGGGTCTCTATGACATCATGGG
GGCTTGCTCGAAGCTCCTGCAGGTGGAGCTGGAGTCTAGCTTGCGGTCGA
TTGAAGTGAACATGAGTCCCTTCGAGAGATGGGGGAGTGGGCGGCCCGGT
ACGAGATGATAGCTGCCATGGGCTACTTGGCCGCGCTATTGATGGTAGGC
AAGGCCTTACACAACTTGGGAAAGATTGCAAAGATGGCGGAGGCAGCGTC
TACACCCGGGAGCGATTTGCCCATCTCGGACCAGACGTCCAAGGAAGCGG
ACTCGGCCGGCCTGAATGACCTACAAGAGGATCTTCGGCCTGATTTTCCA
CGAGGGCATGCCTATGCTCCTCTACGCACAGGCGCTCATTTGGGGCGTCA
ACTTCGTCTTCACATCCCTCATCTTGGGCTTCACCAGCGGAACCAAGAAA
ACTAAGTTCCGGTTCACCCCTCCCTCCGCCGTTATCTCGGGTTTTCTGGG
CTTGGGTCTCTATGACATCATGGGGGCTTGCTCGAAGCTCCTGCAGGTGG
AGCTGGAGTCTAGCTTGCGGTCGATTGAAGTGAACATGAGTCCCTTCGAG
AGATGGGGGAGTGGGCGGCCCGGTACGAGATGATAGCTGCCATGGGCTAC
TTGGCCGCGCTATTGATGGTAGGCAAGGCCTTACACAACTTGGGAAAGAT
TGCAAAGATGGCGGAGGCAGCGTCTACACCCGGGAGCGATTTGCCCATCT
CGGACCAGACGTCCAAGGAAGCGGACTCGGCCGGCCTGAATGACCTACAA
GAGGATCTTCGGCCTGATTTTCCACGAGGGCATGCCTATGCTCCTCTACG
CACAGGCGCTCATTTGGGGCGTCAACTTCGTCTTCACATCCCTCATCTTG
GGCTTCACCAGCGGAACCAAGAAAACTAAGTTCCGGTTCACCCCTCCCTC
CGCCGTTATCTCGGGTTTTCTGGGCTTGGGTCTCTATGACATCATGGGGG
CTTGCTCGAAGCTCCTGCAGGTGGAGCTGGAGTCTAGCTTGCGGTCGATT
GAAGTGAACATGAGTCCCTTCGAGAGATGGGGGAGTGGGCGGCCCGGTAC
GAGATGATAGCTGCCATGGGCTACTTGGCCGCGCTATTGATGGTAGGCAA
GGCCTTACACAACTTGGGAAAGATTGCAAAGATGGCGGAGGCAGCGTCTA
CACCCGGGAGCGATTTGCCCATCTCGGACCAGACGTCCAAGGAA back to top
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