jgi.p|Nanoce1779_2|633756, mRNA_10042 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|633756
Unique NamemRNA_10042
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1186
Alignment locationscaffold_42:148010..149195 +

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Properties
Property NameValue
TranscriptId633842
TrackFilteredModels2
ProteinId633756
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_42supercontigscaffold_42:148010..149195 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|633756gene_10042Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|633756mRNA_10042-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10042CDS_10042Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10042 ID=mRNA_10042|Name=jgi.p|Nanoce1779_2|633756|organism=Nannochloropsis oceanica|type=mRNA|length=1186bp
GCGACGACGACGACATTTTTGAAGGCAAAACGGAGGACGACTTTTTCTCC
AGGGAAAAGGGAGGAAGGGAGGGAAGGGGGGAGGATGAGCCGGCTTCACC
TGTAGCTGCAGCAGCCGGAGCCGTGGAGGGAGAGAGGGAGGATGCTGATG
CGGCAGACACAGCAGCAGTGACAGCAGCAACAGCAGCATCAGCAGCAGCG
GCGGCCGAGACGAGGAAGAGGAAGAGAAGAAGTAGTGTAAATGTGGGCAA
GAGGTTGCTGAGGATGAGCTTCCTTCAGAAGGAAGTGGGGGTAGGGCTGG
AGGGATGGATGGAAGAAGGGGAGGAGGACGAGAGGGAGGAGGACGACGAA
GACGAGGGATGGGAGGAGGACGACCGTGAGGACGAGGACGAGGATGAAGA
GCAGGGAGACAAAAATGGTCGTCGCCCTGCTATCACAGCAGCAGCCGCGA
AGCGTGCCGCGACGCAGTCTGCCTTGCCGCCCACCTCCTTGCGGCAGGGC
TTGCAGCAGCAGAGCGTTTCGGATCAATATCTGAATCGAGTGATAGCGAC
AGTGAAACCCAAGAATAAGAGAGATGCGGCTGCGCTTGAGGAAGCCAGGG
CGATGGCGATCAAGGAGGCAGCAGCAGCGGCAGTATCTGCGGCGAGGAGA
GTGGAAGGGGCAGGAGCAGGAGGAGGAGGAGGAGCGGGAGGAGGGAGGAA
GGGATGGCAGGGGGGCAAGGAGGAGAGAGAAGGAGAATGGAAAGTCAATT
GGAAGGGAGGGATGGGAATGAGCGTACAACAAGTGAAGGAACAAAGGGAG
GAAGAGGATGATGATGATTTGTTCGCAGAGCAGGAGAGGGAGGAAAGGAG
GGGGTTTGCAGGAATGGGTGAGGGCGAGGAGGAGGACCTGGCCGAGGTTG
AGGAGGAGGAGGAGGATGTGGCGTTGCGGCAATTGGGAAGGAGATGGAGA
GAGGTGGGGATAGAGGGAGGAAAGTAGAGAGAGGGTTGGGGAGGGAGGGA
AACAGGTGCATGTTTCTGTTGAGTGAATCACTGTAGATTATGGGGGCGCG
CATTAACATGCGTGTACGTGCGTGTGCGTTTGTAAATATTCATAAAAAGT
GTGGAAAAAGGTACGGCAGAAGAGGGGGGAATTGAAGTCAGCAACCTGAA
CCGCAAAAAGTAAAATTAAAAGACAGAAAGATGGAA
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protein sequence of jgi.p|Nanoce1779_2|633756

>mRNA_10042-protein ID=mRNA_10042-protein|Name=jgi.p|Nanoce1779_2|633756|organism=Nannochloropsis oceanica|type=polypeptide|length=238bp
MSFLQKEVGVGLEGWMEEGEEDEREEDDEDEGWEEDDREDEDEDEEQGDK
NGRRPAITAAAAKRAATQSALPPTSLRQGLQQQSVSDQYLNRVIATVKPK
NKRDAAALEEARAMAIKEAAAAAVSAARRVEGAGAGGGGGAGGGRKGWQG
GKEEREGEWKVNWKGGMGMSVQQVKEQREEEDDDDLFAEQEREERRGFAG
MGEGEEEDLAEVEEEEEDVALRQLGRRWREVGIEGGK*
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mRNA from alignment at scaffold_42:148010..149195+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10042 ID=mRNA_10042|Name=jgi.p|Nanoce1779_2|633756|organism=Nannochloropsis oceanica|type=mRNA|length=1186bp|location=Sequence derived from alignment at scaffold_42:148010..149195+ (Nannochloropsis oceanica)
GCGACGACGACGACATTTTTGAAGGCAAAACGGAGGACGACTTTTTCTCC
AGGGAAAAGGGAGGAAGGGAGGGAAGGGGGGAGGATGAGCCGGCTTCACC
TGTAGCTGCAGCAGCCGGAGCCGTGGAGGGAGAGAGGGAGGATGCTGATG
CGGCAGACACAGCAGCAGTGACAGCAGCAACAGCAGCATCAGCAGCAGCG
GCGGCCGAGACGAGGAAGAGGAAGAGAAGAAGTAGTGTAAATGTGGGCAA
GAGGTTGCTGAGGATGAGCTTCCTTCAGAAGGAAGTGGGGGTAGGGCTGG
AGGGATGGATGGAAGAAGGGGAGGAGGACGAGAGGGAGGAGGACGACGAA
GACGAGGGATGGGAGGAGGACGACCGTGAGGACGAGGACGAGGATGAAGA
GCAGGGAGACAAAAATGGTCGTCGCCCTGCTATCACAGCAGCAGCCGCGA
AGCGTGCCGCGACGCAGTCTGCCTTGCCGCCCACCTCCTTGCGGCAGGGC
TTGCAGCAGCAGAGCGTTTCGGATCAATATCTGAATCGAGTGATAGCGAC
AGTGAAACCCAAGAATAAGAGAGATGCGGCTGCGCTTGAGGAAGCCAGGG
CGATGGCGATCAAGGAGGCAGCAGCAGCGGCAGTATCTGCGGCGAGGAGA
GTGGAAGGGGCAGGAGCAGGAGGAGGAGGAGGAGCGGGAGGAGGGAGGAA
GGGATGGCAGGGGGGCAAGGAGGAGAGAGAAGGAGAATGGAAAGTCAATT
GGAAGGGAGGGATGGGAATGAGCGTACAACAAGTGAAGGAACAAAGGGAG
GAAGAGGATGATGATGATTTGTTCGCAGAGCAGGAGAGGGAGGAAAGGAG
GGGGTTTGCAGGAATGGGTGAGGGCGAGGAGGAGGACCTGGCCGAGGTTG
AGGAGGAGGAGGAGGATGTGGCGTTGCGGCAATTGGGAAGGAGATGGAGA
GAGGTGGGGATAGAGGGAGGAAAGTAGAGAGAGGGTTGGGGAGGGAGGGA
AACAGGTGCATGTTTCTGTTGAGTGAATCACTGTAGATTATGGGGGCGCG
CATTAACATGCGTGTACGTGCGTGTGCGTTTGTAAATATTCATAAAAAGT
GTGGAAAAAGGTACGGCAGAAGAGGGGGGAATTGAAGTCAGCAACCTGAA
CCGCAAAAAGTAAAATTAAAAGACAGAAAGATGGAA
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Coding sequence (CDS) from alignment at scaffold_42:148010..149195+

>mRNA_10042 ID=mRNA_10042|Name=jgi.p|Nanoce1779_2|633756|organism=Nannochloropsis oceanica|type=CDS|length=714bp|location=Sequence derived from alignment at scaffold_42:148010..149195+ (Nannochloropsis oceanica)
ATGAGCTTCCTTCAGAAGGAAGTGGGGGTAGGGCTGGAGGGATGGATGGA
AGAAGGGGAGGAGGACGAGAGGGAGGAGGACGACGAAGACGAGGGATGGG
AGGAGGACGACCGTGAGGACGAGGACGAGGATGAAGAGCAGGGAGACAAA
AATGGTCGTCGCCCTGCTATCACAGCAGCAGCCGCGAAGCGTGCCGCGAC
GCAGTCTGCCTTGCCGCCCACCTCCTTGCGGCAGGGCTTGCAGCAGCAGA
GCGTTTCGGATCAATATCTGAATCGAGTGATAGCGACAGTGAAACCCAAG
AATAAGAGAGATGCGGCTGCGCTTGAGGAAGCCAGGGCGATGGCGATCAA
GGAGGCAGCAGCAGCGGCAGTATCTGCGGCGAGGAGAGTGGAAGGGGCAG
GAGCAGGAGGAGGAGGAGGAGCGGGAGGAGGGAGGAAGGGATGGCAGGGG
GGCAAGGAGGAGAGAGAAGGAGAATGGAAAGTCAATTGGAAGGGAGGGAT
GGGAATGAGCGTACAACAAGTGAAGGAACAAAGGGAGGAAGAGGATGATG
ATGATTTGTTCGCAGAGCAGGAGAGGGAGGAAAGGAGGGGGTTTGCAGGA
ATGGGTGAGGGCGAGGAGGAGGACCTGGCCGAGGTTGAGGAGGAGGAGGA
GGATGTGGCGTTGCGGCAATTGGGAAGGAGATGGAGAGAGGTGGGGATAG
AGGGAGGAAAGTAG
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Synonyms
Publications