jgi.p|Nanoce1779_2|609659, mRNA_10087 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|609659
Unique NamemRNA_10087
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length496
Alignment locationscaffold_46:91259..91843 -

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Properties
Property NameValue
TranscriptId609745
TrackFilteredModels2
ProteinId609659
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_46supercontigscaffold_46:91259..91843 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609659gene_10087Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609659mRNA_10087-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10087CDS_10087Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10087 ID=mRNA_10087|Name=jgi.p|Nanoce1779_2|609659|organism=Nannochloropsis oceanica|type=mRNA|length=496bp
AGAAAAGCTAAAGGTGGCTGGCTCGCCCAGGCAGGATGCAGAGGCCTAGC
GGTAGGCAAGTGCGGTTCCAAGAAAAGCGACCGCGCCAGGCACCCTCTTC
ATCTGTTCGAAGACTTCAATGCGCGCCTGCCCTTGCCAACCCTAGAGGCC
CCTACACTCGCTCCACCAATCTCCACCTTGCCATGCTGCTGCTGACATTT
CTACTCCTTGTCTGCGCCGTGGGAGCTGATCCATCTCCGTCATCGTCAGA
TCCACACATGGGACCCGTACCAGCCGAGCCTGACTTCTGGGGCCAGACGT
ACGATATCGATGGACGAGAAGGTACGCACGAGACAGAGGGAACGACCGAG
GTGCAAAAGATAAAGTGCTACCAGATTGACACCCTTCCCTCCCTCCCTCA
TTTCTTCAGTCACGCTCGGTCAAATCGCCAGCGTGTTGAACCAGTCTCGT
CCCAATTACTTCTGGGGCGGGGAGGTGGTGTGTAGCACGTCTACCG
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protein sequence of jgi.p|Nanoce1779_2|609659

>mRNA_10087-protein ID=mRNA_10087-protein|Name=jgi.p|Nanoce1779_2|609659|organism=Nannochloropsis oceanica|type=polypeptide|length=150bp
MQRPSGRQVRFQEKRPRQAPSSSVRRLQCAPALANPRGPYTRSTNLHLAM
LLLTFLLLVCAVGADPSPSSSDPHMGPVPAEPDFWGQTYDIDGREGTHET
EGTTEVQKIKCYQIDTLPSLPHFFSHARSNRQRVEPVSSQLLLGRGGGV*
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mRNA from alignment at scaffold_46:91259..91843-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10087 ID=mRNA_10087|Name=jgi.p|Nanoce1779_2|609659|organism=Nannochloropsis oceanica|type=mRNA|length=585bp|location=Sequence derived from alignment at scaffold_46:91259..91843- (Nannochloropsis oceanica)
AGAAAAGCTAAAGGTGGCTGGCTCGCCCAGGCAGGATGCAGAGGCCTAGC
GGTAGGCAAGTGCGGTTCCAAGAAAAGCGACCGCGCCAGGCACCCTCTTC
ATCTGTTCGAAGACTTCAATGCGCGCCTGCCCTTGCCAACCCTAGAGGCC
CCTACACTCGCTCCACCAATCTCCACCTTGCCATGCTGCTGCTGACATTT
CTACTCCTTGTCTGCGCCGTGGGAGCTGATCCATCTCCGTCATCGTCGTA
CGTATGTTTGTTCGTCTGTCTCCATTCCTCCTCTCCCTGCCGCCCTCCCT
CCTTCTCACACTTAACTCCCTCGACCCACCACATAGAGATCCACACATGG
GACCCGTACCAGCCGAGCCTGACTTCTGGGGCCAGACGTACGATATCGAT
GGACGAGAAGGTACGCACGAGACAGAGGGAACGACCGAGGTGCAAAAGAT
AAAGTGCTACCAGATTGACACCCTTCCCTCCCTCCCTCATTTCTTCAGTC
ACGCTCGGTCAAATCGCCAGCGTGTTGAACCAGTCTCGTCCCAATTACTT
CTGGGGCGGGGAGGTGGTGTGTAGCACGTCTACCG
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Coding sequence (CDS) from alignment at scaffold_46:91259..91843-

>mRNA_10087 ID=mRNA_10087|Name=jgi.p|Nanoce1779_2|609659|organism=Nannochloropsis oceanica|type=CDS|length=900bp|location=Sequence derived from alignment at scaffold_46:91259..91843- (Nannochloropsis oceanica)
AGATCCACACATGGGACCCGTACCAGCCGAGCCTGACTTCTGGGGCCAGA
CGTACGATATCGATGGACGAGAAGGTACGCACGAGACAGAGGGAACGACC
GAGGTGCAAAAGATAAAGTGCTACCAGATTGACACCCTTCCCTCCCTCCC
TCATTTCTTCAGTCACGCTCGGTCAAATCGCCAGCGTGTTGAACCAGTCT
CGTCCCAATTACTTCTGGGGCGGGGAGGTGGTGTGTAGATGCAGAGGCCT
AGCGGTAGGCAAGTGCGGTTCCAAGAAAAGCGACCGCGCCAGGCACCCTC
TTCATCTGTTCGAAGACTTCAATGCGCGCCTGCCCTTGCCAACCCTAGAG
GCCCCTACACTCGCTCCACCAATCTCCACCTTGCCATGCTGCTGCTGACA
TTTCTACTCCTTGTCTGCGCCGTGGGAGCTGATCCATCTCCGTCATCGTC
AGATCCACACATGGGACCCGTACCAGCCGAGCCTGACTTCTGGGGCCAGA
CGTACGATATCGATGGACGAGAAGGTACGCACGAGACAGAGGGAACGACC
GAGGTGCAAAAGATAAAGTGCTACCAGATTGACACCCTTCCCTCCCTCCC
TCATTTCTTCAGTCACGCTCGGTCAAATCGCCAGCGTGTTGAACCAGTCT
CGTCCCAATTACTTCTGGGGCGGGGAGGTGGTGTGTAGATGCAGAGGCCT
AGCGGTAGGCAAGTGCGGTTCCAAGAAAAGCGACCGCGCCAGGCACCCTC
TTCATCTGTTCGAAGACTTCAATGCGCGCCTGCCCTTGCCAACCCTAGAG
GCCCCTACACTCGCTCCACCAATCTCCACCTTGCCATGCTGCTGCTGACA
TTTCTACTCCTTGTCTGCGCCGTGGGAGCTGATCCATCTCCGTCATCGTC
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Synonyms
Publications