jgi.p|Nanoce1779_2|609945, mRNA_10286 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|609945
Unique NamemRNA_10286
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length476
Alignment locationscaffold_47:152632..153221 -

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Properties
Property NameValue
TranscriptId610031
TrackFilteredModels2
ProteinId609945
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_47supercontigscaffold_47:152632..153221 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609945gene_10286Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609945mRNA_10286-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10286CDS_10286Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10286 ID=mRNA_10286|Name=jgi.p|Nanoce1779_2|609945|organism=Nannochloropsis oceanica|type=mRNA|length=476bp
TGAATGCCCACAGCTGGCCTGCTTTCTTGCTTTAGGGGCCGCATGCTGTG
TGCATTTCAAGCCGTGGCGTAGGTGACAAGGGTGCCGGGAAGAGAAAAGG
CTACAGCACGGCATGAATCATCACCAACAGAGCAAGAAGGCATGCTTTTA
CCTCAGTGGCTTGCCTGGCTGCCTTTTCCCATCTGCAATGCACTACTACA
GGCATCACCATGCATCCAGCACTCAACATATTCTTCTCATACTATAATTT
GCATGTGTCCAAGGCGGCTGACGTGCATTGTACGGGGTGTGTGTGTGGTA
TCAATACAGAAGAAGTCGTGCATCATCGTGGCTCATTTTTGGCGCAAAGT
CAATGCAAGCCCACCCACCTTGACAACACCGCACACCCTCACTCCACACA
CACATCCATGGAGTCCAGGGACATCGTGAACGTAAACTCGGAGCCTGCGG
ACCCCATCGCTCTTCCCAACACCCCC
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protein sequence of jgi.p|Nanoce1779_2|609945

>mRNA_10286-protein ID=mRNA_10286-protein|Name=jgi.p|Nanoce1779_2|609945|organism=Nannochloropsis oceanica|type=polypeptide|length=96bp
MLLPQWLAWLPFPICNALLQASPCIQHSTYSSHTIICMCPRRLTCIVRGV
CVVSIQKKSCIIVAHFWRKVNASPPTLTTPHTLTPHTHPWSPGTS*
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mRNA from alignment at scaffold_47:152632..153221-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10286 ID=mRNA_10286|Name=jgi.p|Nanoce1779_2|609945|organism=Nannochloropsis oceanica|type=mRNA|length=590bp|location=Sequence derived from alignment at scaffold_47:152632..153221- (Nannochloropsis oceanica)
TGAATGCCCACAGCTGGCCTGCTGCCAAAGGCGGGCGGTGGGGGGGGTAG
GTGAGGAGGTAGAAAGGAGAGTGAGTTAGCTTACGAAAGATACAATGCTA
CGCCCACCCAAAAAGGAATTTATCCATCTTCATGCCTTTCTTGCTTTAGG
GGCCGCATGCTGTGTGCATTTCAAGCCGTGGCGTAGGTGACAAGGGTGCC
GGGAAGAGAAAAGGCTACAGCACGGCATGAATCATCACCAACAGAGCAAG
AAGGCATGCTTTTACCTCAGTGGCTTGCCTGGCTGCCTTTTCCCATCTGC
AATGCACTACTACAGGCATCACCATGCATCCAGCACTCAACATATTCTTC
TCATACTATAATTTGCATGTGTCCAAGGCGGCTGACGTGCATTGTACGGG
GTGTGTGTGTGGTATCAATACAGAAGAAGTCGTGCATCATCGTGGCTCAT
TTTTGGCGCAAAGTCAATGCAAGCCCACCCACCTTGACAACACCGCACAC
CCTCACTCCACACACACATCCATGGAGTCCAGGGACATCGTGAACGTAAA
CTCGGAGCCTGCGGACCCCATCGCTCTTCCCAACACCCCC
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Coding sequence (CDS) from alignment at scaffold_47:152632..153221-

>mRNA_10286 ID=mRNA_10286|Name=jgi.p|Nanoce1779_2|609945|organism=Nannochloropsis oceanica|type=CDS|length=288bp|location=Sequence derived from alignment at scaffold_47:152632..153221- (Nannochloropsis oceanica)
ATGCTTTTACCTCAGTGGCTTGCCTGGCTGCCTTTTCCCATCTGCAATGC
ACTACTACAGGCATCACCATGCATCCAGCACTCAACATATTCTTCTCATA
CTATAATTTGCATGTGTCCAAGGCGGCTGACGTGCATTGTACGGGGTGTG
TGTGTGGTATCAATACAGAAGAAGTCGTGCATCATCGTGGCTCATTTTTG
GCGCAAAGTCAATGCAAGCCCACCCACCTTGACAACACCGCACACCCTCA
CTCCACACACACATCCATGGAGTCCAGGGACATCGTGA
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Synonyms
Publications