jgi.p|Nanoce1779_2|525159, mRNA_2401 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|525159
Unique NamemRNA_2401
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length846
Alignment locationscaffold_5:248704..250733 -

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Properties
Property NameValue
TranscriptId525245
TrackFilteredModels2
ProteinId525159
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:248704..250733 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|525159gene_2401Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|525159mRNA_2401-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2401CDS_2401Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2401 ID=mRNA_2401|Name=jgi.p|Nanoce1779_2|525159|organism=Nannochloropsis oceanica|type=mRNA|length=846bp
ATGGAGGGAGGGTCGGTCGAAGGAGGAGAGAATGTCCCTGCGGACGTGCA
ACAGCAACAGCAGCAGCATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGG
AGGAGGAGGAGGAAGAGGAGCGGGAGGAGGACGTCGATCGACAGCCATTG
ATGGACCTTCAGGCCTTCGCTGGAATGGCGCTAGCGATCGAAACACGATG
GGATGTCGGCATTGGGGGCGGCGTTTGGACAACAGGTTTGCTGGTCTGTG
AGTACTTTGAGCGGCATGCGGCTTTCTTCACCGGGGTTTTTCGGGGCAAG
GGCATCATCGAAATCGGCTCTGGTACTGGCCTAGTGGGACTTTCTCTGGC
CAGCAATTCCCAGTTTCAACCGTGCCAAGTAGTGGTAACCGATCAAAAAG
ACCACCTGGGGCTCATCCAACGTAACGTGGATGTCAACGCGACCAAGCTC
CATGCCCCACTGCTTGTGCAGGAGTTCGACTGGTTAAGAAAGAAGGAGGA
AGGGGAAAACGTGGCATTGCTCTCCTCCTCCCCTTTTGACGTGATCGTTG
GGACAGATGTTGCATATTGCAAGGAACTCTACGCGCCGGTCGTGCATGCT
TTGGAGCAAGTCGCGGGGCCAGAAAGCTTAATTTTATTGGGCGTCACACG
CACAGACACAGGGCCTTTGTTTTTCCAGTTATTGCACAATGCGGGATTTG
ATTACTGCCTGATGCCCACGGCGGTGGGGGATGGAGGGGAGGGGAGTTGT
GTGGAGGCCGGGGGGTTCGCGTTGTTGAGCGTGGTTAGGCGGCGAGGACG
AGGGGAGAAGGAAGTAGGAAAAGATTACTACAATTGTATGATTTAA
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protein sequence of jgi.p|Nanoce1779_2|525159

>mRNA_2401-protein ID=mRNA_2401-protein|Name=jgi.p|Nanoce1779_2|525159|organism=Nannochloropsis oceanica|type=polypeptide|length=282bp
MEGGSVEGGENVPADVQQQQQQHQQQQQQQQQQEEEEEEEREEDVDRQPL
MDLQAFAGMALAIETRWDVGIGGGVWTTGLLVCEYFERHAAFFTGVFRGK
GIIEIGSGTGLVGLSLASNSQFQPCQVVVTDQKDHLGLIQRNVDVNATKL
HAPLLVQEFDWLRKKEEGENVALLSSSPFDVIVGTDVAYCKELYAPVVHA
LEQVAGPESLILLGVTRTDTGPLFFQLLHNAGFDYCLMPTAVGDGGEGSC
VEAGGFALLSVVRRRGRGEKEVGKDYYNCMI*
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mRNA from alignment at scaffold_5:248704..250733-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2401 ID=mRNA_2401|Name=jgi.p|Nanoce1779_2|525159|organism=Nannochloropsis oceanica|type=mRNA|length=2030bp|location=Sequence derived from alignment at scaffold_5:248704..250733- (Nannochloropsis oceanica)
ATGGAGGGAGGGTCGGTCGAAGGAGGAGAGAATGTCCCTGCGGACGTGCA
ACAGCAACAGCAGCAGCATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGG
AGGAGGAGGAGGAAGAGGAGCGGGAGGAGGACGTCGATCGACAGCCATTG
ATGGACCTTCAGGCCTTCGCTGGAATGGTCTATGAGCGCCTTCAACCAAT
GTTAGGGTGCCACTCCTTCTCCATGCGTCAATTCCAGTACGAGTCCCCCG
ATCGTGCCTGCTTTCTAGTCCGCACGACGCAAGGAAGAAAAGTTACTGCT
GGTGCTGCGGTTGGCGGCACTGTGGGGGGAGGCCATGGCAATCATCAGCA
TCACCAGCATTACCTGTGGTTGTTGTCGAGGCAAGCGGAAGGTCAGTTGA
AGGACTGCTGGATGACTGACGCCATCGTCTCGGCGGAGCACGGGTTGCTG
AGTTTTTTAAACCTTCCCTTATGTGCTGAGGATAGGGGTGGAAGAGGGAT
GGGGGGGCGGGGGGCACAGGCTGGTGGAGTGTGGTTGCAGCAGTGCGCGG
CCGGTGGGGCTGATGGCGTGGAGTAGGGGCAGCCGTAGAGTAAATTGATT
CGTGTGACGGAATCGTGAAAGAAAAATAGGGACGGTAGAGAAGAAACGAT
TTCTATGAAATAAATTTTGATCGAATGAGGGGATGGTAGAGTAAATTTTG
ACGAAGGGAGGGGAGGTCGGGGATCCGGTTGAGCGTACGTTCCGCAATTT
TGGAGAATTAGAAGCTAGCGGTTCAGGTGAAAACAAAGAAAGACATGCCG
TTGTAGCTATCTACTGTGAATATAAGCTGCTCTTAAGGGTGGTGATGTAG
GTCAGCGCGTTAAATGTACGGTGATTTCTTTCTCTTCTTGTGCGCAACCT
GATGCACGCAAGTCGAGGCTGGAAGAGGAGATCTCTTTTGTCCCACCGTC
CAAGGACTCCACGCGATCTTATGTCTCTGATCATGACATATAACCCTAAT
ACAATATAAATGCAGACAGGAGATGGAGGACGGCGTCGTCGATGAGCGGC
AAAGGCACCAAAAGGAGGACGAATGCAACCCATCGCCTCCTCCGTCCACC
ACCCTGAAGCATGTTTTCTTGGGACAGGCGCTAGCGATCGAAACACGATG
GGATGTCGGCATTGGGGGCGGCGTTTGGACAACAGGTTTGCTGGTCTGTG
AGTACTTTGAGCGGCATGCGGCTTTCTTCACCGGGGTTTTTCGGGGCAAG
GGCATCATGTGAGTAGTCTTGTATGAGGAGATCGACATTCCTGCGTGAGG
TTGAGAATGAGAAACACGGCAGGCACAAGAGAAATCATGGACGGAACAAA
GGAGGGTGATTAAGGAAGGATGTTGTTGAGTTGATTCACGAGAGTCATGT
GTGCTCTCCTGTCGTGCCAATACAACTTTTTTCTCTCAATGTACCCTTCC
TCACACACTCACTTCTCCCCTTCCTAAACTCACACCCCACAGCGAAATCG
GCTCTGGTACTGGCCTAGTGGGACTTTCTCTGGCCAGCAATTCCCAGTTT
CAACCGTGCCAAGTAGTGGTAACCGATCAAAAAGACCACCTGGGGCTCAT
CCAACGTAACGTGGATGTCAACGCGACCAAGCTCCATGCCCCACTGCTTG
TGCAGGAGTTCGACTGGTTAAGAAAGAAGGAGGAAGGGGAAAACGTGGCA
TTGCTCTCCTCCTCCCCTTTTGACGTGATCGTTGGGACAGATGTTGCATA
TTGCAAGGAACTCTACGCGCCGGTCGTGCATGCTTTGGAGCAAGTCGCGG
GGCCAGAAAGCTTAATTTTATTGGGCGTCACACGCACAGACACAGGGCCT
TTGTTTTTCCAGTTATTGCACAATGCGGGATTTGATTACTGCCTGATGCC
CACGGCGGTGGGGGATGGAGGGGAGGGGAGTTGTGTGGAGGCCGGGGGGT
TCGCGTTGTTGAGCGTGGTTAGGCGGCGAGGACGAGGGGAGAAGGAAGTA
GGAAAAGATTACTACAATTGTATGATTTAA
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Coding sequence (CDS) from alignment at scaffold_5:248704..250733-

>mRNA_2401 ID=mRNA_2401|Name=jgi.p|Nanoce1779_2|525159|organism=Nannochloropsis oceanica|type=CDS|length=2538bp|location=Sequence derived from alignment at scaffold_5:248704..250733- (Nannochloropsis oceanica)
CGAAATCGGCTCTGGTACTGGCCTAGTGGGACTTTCTCTGGCCAGCAATT
CCCAGTTTCAACCGTGCCAAGTAGTGGTAACCGATCAAAAAGACCACCTG
GGGCTCATCCAACGTAACGTGGATGTCAACGCGACCAAGCTCCATGCCCC
ACTGCTTGTGCAGGAGTTCGACTGGTTAAGAAAGAAGGAGGAAGGGGAAA
ACGTGGCATTGCTCTCCTCCTCCCCTTTTGACGTGATCGTTGGGACAGAT
GTTGCATATTGCAAGGAACTCTACGCGCCGGTCGTGCATGCTTTGGAGCA
AGTCGCGGGGCCAGAAAGCTTAATTTTATTGGGCGTCACACGCACAGACA
CAGGGCCTTTGTTTTTCCAGTTATTGCACAATGCGGGATTTGATTACTGC
CTGATGCCCACGGCGGTGGGGGATGGAGGGGAGGGGAGTTGTGTGGAGGC
CGGGGGGTTCGCGTTGTTGAGCGTGGTTAGGCGGCGAGGACGAGGGGAGA
AGGAAGTAGGAAAAGATTACTACAATTGTATGATTTAAGCGCTAGCGATC
GAAACACGATGGGATGTCGGCATTGGGGGCGGCGTTTGGACAACAGGTTT
GCTGGTCTGTGAGTACTTTGAGCGGCATGCGGCTTTCTTCACCGGGGTTT
TTCGGGGCAAGGGCATCATATGGAGGGAGGGTCGGTCGAAGGAGGAGAGA
ATGTCCCTGCGGACGTGCAACAGCAACAGCAGCAGCATCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGGAGGAGGAGGAGGAAGAGGAGCGGGAGGAGGA
CGTCGATCGACAGCCATTGATGGACCTTCAGGCCTTCGCTGGAATGCGAA
ATCGGCTCTGGTACTGGCCTAGTGGGACTTTCTCTGGCCAGCAATTCCCA
GTTTCAACCGTGCCAAGTAGTGGTAACCGATCAAAAAGACCACCTGGGGC
TCATCCAACGTAACGTGGATGTCAACGCGACCAAGCTCCATGCCCCACTG
CTTGTGCAGGAGTTCGACTGGTTAAGAAAGAAGGAGGAAGGGGAAAACGT
GGCATTGCTCTCCTCCTCCCCTTTTGACGTGATCGTTGGGACAGATGTTG
CATATTGCAAGGAACTCTACGCGCCGGTCGTGCATGCTTTGGAGCAAGTC
GCGGGGCCAGAAAGCTTAATTTTATTGGGCGTCACACGCACAGACACAGG
GCCTTTGTTTTTCCAGTTATTGCACAATGCGGGATTTGATTACTGCCTGA
TGCCCACGGCGGTGGGGGATGGAGGGGAGGGGAGTTGTGTGGAGGCCGGG
GGGTTCGCGTTGTTGAGCGTGGTTAGGCGGCGAGGACGAGGGGAGAAGGA
AGTAGGAAAAGATTACTACAATTGTATGATTTAAGCGCTAGCGATCGAAA
CACGATGGGATGTCGGCATTGGGGGCGGCGTTTGGACAACAGGTTTGCTG
GTCTGTGAGTACTTTGAGCGGCATGCGGCTTTCTTCACCGGGGTTTTTCG
GGGCAAGGGCATCATATGGAGGGAGGGTCGGTCGAAGGAGGAGAGAATGT
CCCTGCGGACGTGCAACAGCAACAGCAGCAGCATCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGGAGGAGGAGGAGGAAGAGGAGCGGGAGGAGGACGTC
GATCGACAGCCATTGATGGACCTTCAGGCCTTCGCTGGAATGCGAAATCG
GCTCTGGTACTGGCCTAGTGGGACTTTCTCTGGCCAGCAATTCCCAGTTT
CAACCGTGCCAAGTAGTGGTAACCGATCAAAAAGACCACCTGGGGCTCAT
CCAACGTAACGTGGATGTCAACGCGACCAAGCTCCATGCCCCACTGCTTG
TGCAGGAGTTCGACTGGTTAAGAAAGAAGGAGGAAGGGGAAAACGTGGCA
TTGCTCTCCTCCTCCCCTTTTGACGTGATCGTTGGGACAGATGTTGCATA
TTGCAAGGAACTCTACGCGCCGGTCGTGCATGCTTTGGAGCAAGTCGCGG
GGCCAGAAAGCTTAATTTTATTGGGCGTCACACGCACAGACACAGGGCCT
TTGTTTTTCCAGTTATTGCACAATGCGGGATTTGATTACTGCCTGATGCC
CACGGCGGTGGGGGATGGAGGGGAGGGGAGTTGTGTGGAGGCCGGGGGGT
TCGCGTTGTTGAGCGTGGTTAGGCGGCGAGGACGAGGGGAGAAGGAAGTA
GGAAAAGATTACTACAATTGTATGATTTAAGCGCTAGCGATCGAAACACG
ATGGGATGTCGGCATTGGGGGCGGCGTTTGGACAACAGGTTTGCTGGTCT
GTGAGTACTTTGAGCGGCATGCGGCTTTCTTCACCGGGGTTTTTCGGGGC
AAGGGCATCATATGGAGGGAGGGTCGGTCGAAGGAGGAGAGAATGTCCCT
GCGGACGTGCAACAGCAACAGCAGCAGCATCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGGAGGAGGAGGAGGAAGAGGAGCGGGAGGAGGACGTCGATC
GACAGCCATTGATGGACCTTCAGGCCTTCGCTGGAATG
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Synonyms
Publications