jgi.p|Nanoce1779_2|328717, mRNA_2420 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|328717
Unique NamemRNA_2420
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length657
Alignment locationscaffold_5:301989..302813 -

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Properties
Property NameValue
TranscriptId328803
TrackFilteredModels2
ProteinId328717
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:301989..302813 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|328717gene_2420Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|328717mRNA_2420-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2420CDS_2420Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2420 ID=mRNA_2420|Name=jgi.p|Nanoce1779_2|328717|organism=Nannochloropsis oceanica|type=mRNA|length=657bp
TCCCGTTCCCCTTCCCACCACCACCACCACCACCTGCATGATTAAGGGGT
ATTCAAGTTGCATTTGCTGTCTAGTCACTTGCTCCTTATCCTGTACTTGT
GCATGTGTGTCTGTTCTAGCAGGCTGCTTCGCCAACCCATGCTTTGCCTC
AACTTGGTTCGTAACGCTGTCTTAGCCCCGCCCCACACCCACCATACACG
CAGCAAGAGATACAATCGCAACTACAACTGCAGTAGATGCACATTTAGCA
CGACGGGGCCTACACGAAGCAAAAAGCATTCTACTGGCCTGGCAGGAAGT
GGAGTAGCGGGAGGGGCAAAAACAGACCATCCCATACCCAGGGAGGCAAA
GATGACGGTCACAAAGAAATCACTCTCCGTCCTCGTCCTCTGTACATTCG
GTACCTTGTTGGCAGCCTTGAAGTATCGCTCGTTTCTCCCCGCCCCAACA
CACACCCCTGTCCCTCTCTTCTCACTTCAGTCCACTCGCCCCGCTTCCTA
CCCTCCTCAAACCACAACCAGTACCACCGGGGCGGGCCGACCACGCAAAG
CGTCTTGCAATGGGGCAGCGACCGGCTTTTGTTGCTAGGCATAGGAGGGG
AGAAGAAGGAAGCAGATGGGGCAGCAGGGCGGTTGTTGGCGATTGGAGGA
GGAGGAG
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protein sequence of jgi.p|Nanoce1779_2|328717

>mRNA_2420-protein ID=mRNA_2420-protein|Name=jgi.p|Nanoce1779_2|328717|organism=Nannochloropsis oceanica|type=polypeptide|length=162bp
MCVCSSRLLRQPMLCLNLVRNAVLAPPHTHHTRSKRYNRNYNCSRCTFST
TGPTRSKKHSTGLAGSGVAGGAKTDHPIPREAKMTVTKKSLSVLVLCTFG
TLLAALKYRSFLPAPTHTPVPLFSLQSTRPASYPPQTTTSTTGAGRPRKA
SCNGAATGFCC*
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mRNA from alignment at scaffold_5:301989..302813-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2420 ID=mRNA_2420|Name=jgi.p|Nanoce1779_2|328717|organism=Nannochloropsis oceanica|type=mRNA|length=825bp|location=Sequence derived from alignment at scaffold_5:301989..302813- (Nannochloropsis oceanica)
TCCCGTTCCCCTTCCCACCACCACCACCACCACCTGCATGATTAAGGGGT
ATTCAAGTTGCATTTGCTGTCTAGTCACTTGCTCCTTATCCTGTACTTGT
GCATGTGTGTCTGTTCTAGCAGGCTGCTTCGCCAACCCATGCTTTGCCTC
AACTTGGTTCGTAACGCTGTCTTAGCCCCGCCCCACACCCACCATACACG
CAGCAAGAGATACAATCGCAACTACAACTGCAGTAGATGCACATTTAGCA
CGACGGGGCCTACACGAAGCAAAAAGCATTCTACTGGCCTGGCAGGAAGT
GGAGTAGCGGGAGGGGCAAAAACAGACCATCCCATACCCAGGGAGGCAAA
GATGACGGTCACAAAGAAATCACTCTCCGTCCTCGTCCTCTGTACATTCG
GTACCTTGTTGGCAGCCTTGAAGGTATGTGGGATGGGTGATCGTGTGTGG
TGTGATGCGCGATGGATGCCAAAGCAAGGGAATGGCATCCTTCGCCGTTC
CGCCCGGCATGGGTCCATCTACACACAGCACAACCAGACTCACTTGCTTA
GAATATGCTTGAAATAGTGCCCATGGTAACACTTATGATAGTATCGCTCG
TTTCTCCCCGCCCCAACACACACCCCTGTCCCTCTCTTCTCACTTCAGTC
CACTCGCCCCGCTTCCTACCCTCCTCAAACCACAACCAGTACCACCGGGG
CGGGCCGACCACGCAAAGCGTCTTGCAATGGGGCAGCGACCGGCTTTTGT
TGCTAGGCATAGGAGGGGAGAAGAAGGAAGCAGATGGGGCAGCAGGGCGG
TTGTTGGCGATTGGAGGAGGAGGAG
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Coding sequence (CDS) from alignment at scaffold_5:301989..302813-

>mRNA_2420 ID=mRNA_2420|Name=jgi.p|Nanoce1779_2|328717|organism=Nannochloropsis oceanica|type=CDS|length=972bp|location=Sequence derived from alignment at scaffold_5:301989..302813- (Nannochloropsis oceanica)
TATCGCTCGTTTCTCCCCGCCCCAACACACACCCCTGTCCCTCTCTTCTC
ACTTCAGTCCACTCGCCCCGCTTCCTACCCTCCTCAAACCACAACCAGTA
CCACCGGGGCGGGCCGACCACGCAAAGCGTCTTGCAATGGGGCAGCGACC
GGCTTTTGTTGCTAGATGTGTGTCTGTTCTAGCAGGCTGCTTCGCCAACC
CATGCTTTGCCTCAACTTGGTTCGTAACGCTGTCTTAGCCCCGCCCCACA
CCCACCATACACGCAGCAAGAGATACAATCGCAACTACAACTGCAGTAGA
TGCACATTTAGCACGACGGGGCCTACACGAAGCAAAAAGCATTCTACTGG
CCTGGCAGGAAGTGGAGTAGCGGGAGGGGCAAAAACAGACCATCCCATAC
CCAGGGAGGCAAAGATGACGGTCACAAAGAAATCACTCTCCGTCCTCGTC
CTCTGTACATTCGGTACCTTGTTGGCAGCCTTGAAGTATCGCTCGTTTCT
CCCCGCCCCAACACACACCCCTGTCCCTCTCTTCTCACTTCAGTCCACTC
GCCCCGCTTCCTACCCTCCTCAAACCACAACCAGTACCACCGGGGCGGGC
CGACCACGCAAAGCGTCTTGCAATGGGGCAGCGACCGGCTTTTGTTGCTA
GATGTGTGTCTGTTCTAGCAGGCTGCTTCGCCAACCCATGCTTTGCCTCA
ACTTGGTTCGTAACGCTGTCTTAGCCCCGCCCCACACCCACCATACACGC
AGCAAGAGATACAATCGCAACTACAACTGCAGTAGATGCACATTTAGCAC
GACGGGGCCTACACGAAGCAAAAAGCATTCTACTGGCCTGGCAGGAAGTG
GAGTAGCGGGAGGGGCAAAAACAGACCATCCCATACCCAGGGAGGCAAAG
ATGACGGTCACAAAGAAATCACTCTCCGTCCTCGTCCTCTGTACATTCGG
TACCTTGTTGGCAGCCTTGAAG
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Synonyms
Publications