jgi.p|Nanoce1779_2|564135, mRNA_2619 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|564135
Unique NamemRNA_2619
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length567
Alignment locationscaffold_5:783805..784953 +

Link to JBrowse

Properties
Property NameValue
TranscriptId564221
TrackFilteredModels2
ProteinId564135
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:783805..784953 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|564135gene_2619Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|564135mRNA_2619-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2619CDS_2619Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2619 ID=mRNA_2619|Name=jgi.p|Nanoce1779_2|564135|organism=Nannochloropsis oceanica|type=mRNA|length=567bp
ATGGAGCGGTACAAAGTCATCGAAAATCCAGCGACCAATCCCGATATTGT
CGTTCTTACTCGATTCTTTCGACTGCGCCACCCTTTCCCCTTCCATGCAT
TGACTACTCGCCTCGCCTATCACCTAGCCACGGGCCATGTGACCCTCGCC
GAGACCCCCTGGCTGGAAAGCAACGACCTCTACCGCTGGTCGATCCCGTT
CTTCCTTCGCGTGCTCCTCAAGCTTGGAAGGCCATTGTACGCACCTCTTT
TTTGCTTGAAATGGATGGGTTTGCGAACTATGGTCCTGTGGAGGTCTTTC
TCACACTTTATTTTTCCATCCGCCCCGTATGTGATGTTGTTTGCCTTTCG
CGCCATTTACATGCTTGCGGCCTGTGCCCTGGTCACTGTGGCTCTGGACG
AGTTGATGCGCCCGGCATTCCAATGGATGTTTAGTAAGGCGTTTGGTGGG
CAGAGACCGTACCCAGAGATATCTTTTTATGATTTGGCGGAGGCGGGGAG
GAGGAGGGGTAAAAGGGTGGAGATGGGGGGAGGTTTGTCTTGGCGGGATC
GGTTGTGGGCACTGTGA
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protein sequence of jgi.p|Nanoce1779_2|564135

>mRNA_2619-protein ID=mRNA_2619-protein|Name=jgi.p|Nanoce1779_2|564135|organism=Nannochloropsis oceanica|type=polypeptide|length=189bp
MERYKVIENPATNPDIVVLTRFFRLRHPFPFHALTTRLAYHLATGHVTLA
ETPWLESNDLYRWSIPFFLRVLLKLGRPLYAPLFCLKWMGLRTMVLWRSF
SHFIFPSAPYVMLFAFRAIYMLAACALVTVALDELMRPAFQWMFSKAFGG
QRPYPEISFYDLAEAGRRRGKRVEMGGGLSWRDRLWAL*
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mRNA from alignment at scaffold_5:783805..784953+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2619 ID=mRNA_2619|Name=jgi.p|Nanoce1779_2|564135|organism=Nannochloropsis oceanica|type=mRNA|length=1149bp|location=Sequence derived from alignment at scaffold_5:783805..784953+ (Nannochloropsis oceanica)
ATGGAGCGGTACGTAAGTTAGAGGGAGTAGTGCGTCCTCCTCCTCCCCGC
TCACCTTTCCTATACCGTCATAAAGCATCCACAAATCATCTGCTATAGAA
GCTCTATAAGCAGCACCAGGAAAGATACTGGTACGGGCGGTGTCTCTCAA
GCACCCATTGAATTCCAGGACGATTGGAAGCGTTTGATGGTAGGTAGCAA
TGTTAAGAGGTCAGCTTTCCACGATTCGATCACTTAAAGCCAAATACTTA
ACAGGAAGGAGGCATCTCCATCAATCTTTCCGCAATCTTGAACAAAAGCG
ATATTTTGCATAACGAGCACGGTACCGTCTTTCTCGAAGCATTCAAGCGG
ACCCCCCCCCCCCTCCTCCTCCTCCTCCATCACGACTCTGCAGCGCTTCC
TCAAAATGGGCCACAAAACCCCAACACCCGATGGCCTCATTGAAATAGAG
TCAGGACGCTGGTGGCGCTGGACGTCAGCAGAACAAAGGGAGTTCATCGA
AACACAAACCGTGAAAAGGACACCTCCCTCCTCTCCTTCCTCTTCCTCTA
CCTCCCCCTTCTCCTCCACAACTGCCCCACTTACTCACATGCAGAAAGTC
ATCGAAAATCCAGCGACCAATCCCGATATTGTCGTTCTTACTCGATTCTT
TCGACTGCGCCACCCTTTCCCCTTCCATGCATTGACTACTCGCCTCGCCT
ATCACCTAGCCACGGGCCATGTGACCCTCGCCGAGACCCCCTGGCTGGAA
AGCAACGACCTCTACCGCTGGTCGATCCCGTTCTTCCTTCGCGTGCTCCT
CAAGCTTGGAAGGCCATTGTACGCACCTCTTTTTTGCTTGAAATGGATGG
GTTTGCGAACTATGGTCCTGTGGAGGTCTTTCTCACACTTTATTTTTCCA
TCCGCCCCGTATGTGATGTTGTTTGCCTTTCGCGCCATTTACATGCTTGC
GGCCTGTGCCCTGGTCACTGTGGCTCTGGACGAGTTGATGCGCCCGGCAT
TCCAATGGATGTTTAGTAAGGCGTTTGGTGGGCAGAGACCGTACCCAGAG
ATATCTTTTTATGATTTGGCGGAGGCGGGGAGGAGGAGGGGTAAAAGGGT
GGAGATGGGGGGAGGTTTGTCTTGGCGGGATCGGTTGTGGGCACTGTGA
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Coding sequence (CDS) from alignment at scaffold_5:783805..784953+

>mRNA_2619 ID=mRNA_2619|Name=jgi.p|Nanoce1779_2|564135|organism=Nannochloropsis oceanica|type=CDS|length=1134bp|location=Sequence derived from alignment at scaffold_5:783805..784953+ (Nannochloropsis oceanica)
ATGGAGCGGTACAAAGTCATCGAAAATCCAGCGACCAATCCCGATATTGT
CGTTCTTACTCGATTCTTTCGACTGCGCCACCCTTTCCCCTTCCATGCAT
TGACTACTCGCCTCGCCTATCACCTAGCCACGGGCCATGTGACCCTCGCC
GAGACCCCCTGGCTGGAAAGCAACGACCTCTACCGCTGGTCGATCCCGTT
CTTCCTTCGCGTGCTCCTCAAGCTTGGAAGGCCATTGTACGCACCTCTTT
TTTGCTTGAAATGGATGGGTTTGCGAACTATGGTCCTGTGGAGGTCTTTC
TCACACTTTATTTTTCCATCCGCCCCGTATGTGATGTTGTTTGCCTTTCG
CGCCATTTACATGCTTGCGGCCTGTGCCCTGGTCACTGTGGCTCTGGACG
AGTTGATGCGCCCGGCATTCCAATGGATGTTTAGTAAGGCGTTTGGTGGG
CAGAGACCGTACCCAGAGATATCTTTTTATGATTTGGCGGAGGCGGGGAG
GAGGAGGGGTAAAAGGGTGGAGATGGGGGGAGGTTTGTCTTGGCGGGATC
GGTTGTGGGCACTGTGAATGGAGCGGTACAAAGTCATCGAAAATCCAGCG
ACCAATCCCGATATTGTCGTTCTTACTCGATTCTTTCGACTGCGCCACCC
TTTCCCCTTCCATGCATTGACTACTCGCCTCGCCTATCACCTAGCCACGG
GCCATGTGACCCTCGCCGAGACCCCCTGGCTGGAAAGCAACGACCTCTAC
CGCTGGTCGATCCCGTTCTTCCTTCGCGTGCTCCTCAAGCTTGGAAGGCC
ATTGTACGCACCTCTTTTTTGCTTGAAATGGATGGGTTTGCGAACTATGG
TCCTGTGGAGGTCTTTCTCACACTTTATTTTTCCATCCGCCCCGTATGTG
ATGTTGTTTGCCTTTCGCGCCATTTACATGCTTGCGGCCTGTGCCCTGGT
CACTGTGGCTCTGGACGAGTTGATGCGCCCGGCATTCCAATGGATGTTTA
GTAAGGCGTTTGGTGGGCAGAGACCGTACCCAGAGATATCTTTTTATGAT
TTGGCGGAGGCGGGGAGGAGGAGGGGTAAAAGGGTGGAGATGGGGGGAGG
TTTGTCTTGGCGGGATCGGTTGTGGGCACTGTGA
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Synonyms
Publications