jgi.p|Nanoce1779_2|625029, mRNA_2681 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|625029
Unique NamemRNA_2681
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1520
Alignment locationscaffold_5:921749..923365 -

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Properties
Property NameValue
TranscriptId625115
TrackFilteredModels2
ProteinId625029
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:921749..923365 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|625029gene_2681Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|625029mRNA_2681-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2681CDS_2681Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2681 ID=mRNA_2681|Name=jgi.p|Nanoce1779_2|625029|organism=Nannochloropsis oceanica|type=mRNA|length=1520bp
ACAGAGCCATGGCGGAGGATCAAGGCGCTGAGCGGCTGGCCCGTGTTCGC
GCCGCCTTGAAAGCCGCAGGGCAAGAGCACGTCCTCCATTTTGTCGACGC
GGGCCATGCTACGCCCCATGAGACTACCACCCTTCTTGACCAAGTCGAGG
CACTGGACCTGCCAGCCCTGAACAATATTTTTTCGGGATTGGGAATCAAT
AAGGAGGTGAAACCAGCGGCGGCAGCTGCAGCGGACGAGTACGCGCCGCT
TTCGGAATTGGCCTCGGCTGATAGTACCCCTCCGACCCTTCTCCGAGAAT
GGGAGCAAGCAGGCCTTGGCGCCATTGCCCAAGGCAAGATTGCGGCGTTG
GTGTTAGGTGGTGGACAGGGAACTCGCCTAGGATTTGATGGTCCCAAGGG
TATGTATAAAATTGGGTTGCCCTCGGGCAAGTCCATCTTTCAGCTACTTG
CTGAGAGAGTCTTGCGAGTCTCAACCCTCGCCGCGAGCAGCAGCAGCTGC
TGCAGCAACAGAAAGGGGAAGCATTTACCTTTCTATGTCATGACCAGTCC
TTTGAACCATGAGGCGACGCAACACTTTTTTGAGGAGAACTCTTACTTTG
GATTGACGCCTGCAGATGTCTTTTTCTTCCCCCAGGGCACCATGCCGTGC
TTTGATTTGGAGGGGAAGCTGTTGTTGGCAGGCCCAGGGTCCCTTGCGCA
GGCGCCCGATGGGAATGGAGGCATCTACCCCTCCCTCGCCCGCACGGGCG
CACTGGCCGATATGCGGCAGCGAGGCGTCGAGGCCTTCCACGTCTTTAGC
GTTGACAACGTATTGATCAAAGTGGCTGATCCATATTTTGTTGGTTTTTG
TCTGAGCCGTGGGAGTGATTGCGGGAACATGGTCGTTTGGAAGGAGGGGG
TCGAGGAGAAAGTAGGGGTGGTGGTGAGGAAGAACGGGCGGCCGGCAGTG
GTAGAATACAGTGAGATGGACGAGGGGATGAAGAGCCTGAGACATCAGCA
AGAGGAAGGTGGGGTAGAGAGAGGAAAATTGGTGTATGGCGCGGGGAATA
TCTGCAGTCACTTTTTTACGGTCGATTTTGTTGAGCACGTAGTGGTACCT
CGCTTCGGAAGCGTCTATCACGCGGCTCGGAAAATGATTCCCTCCCTCCC
TCCCTCATCCTCCATCCATCCTCCCGCAGCGGAGGTAAAGACCGCGGGTG
TGAAATTAGAGGCTTTTATATTCGACGTGTTTCCTTTCTCGGAGCGGATG
GCTTTATGGGAGGTGCGAAGGGAGGGAATGTTCGCGGGTGTCAAGGACGC
TCCCGGGGGAAAAGGAGACACGCCTGAACAAGCTCGAAGGATGATGTCGG
AGGAGGCAAGGCGGTGGGTGGTCAAGGCGGGAGGGAAGTTGGTGGGAGGG
GGGGAGGGAGGGGAGGAAGAGGTCTCGGAAATCAGTCCTTTGGTGTCGTA
CAGAGGGGAGGGATTGGAGGGGCGGGTGAAGGGGAAGGAGGTGGTGCTAC
CGATTCTGTTCTTGGAGTGA
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protein sequence of jgi.p|Nanoce1779_2|625029

>mRNA_2681-protein ID=mRNA_2681-protein|Name=jgi.p|Nanoce1779_2|625029|organism=Nannochloropsis oceanica|type=polypeptide|length=504bp
MAEDQGAERLARVRAALKAAGQEHVLHFVDAGHATPHETTTLLDQVEALD
LPALNNIFSGLGINKEVKPAAAAAADEYAPLSELASADSTPPTLLREWEQ
AGLGAIAQGKIAALVLGGGQGTRLGFDGPKGMYKIGLPSGKSIFQLLAER
VLRVSTLAASSSSCCSNRKGKHLPFYVMTSPLNHEATQHFFEENSYFGLT
PADVFFFPQGTMPCFDLEGKLLLAGPGSLAQAPDGNGGIYPSLARTGALA
DMRQRGVEAFHVFSVDNVLIKVADPYFVGFCLSRGSDCGNMVVWKEGVEE
KVGVVVRKNGRPAVVEYSEMDEGMKSLRHQQEEGGVERGKLVYGAGNICS
HFFTVDFVEHVVVPRFGSVYHAARKMIPSLPPSSSIHPPAAEVKTAGVKL
EAFIFDVFPFSERMALWEVRREGMFAGVKDAPGGKGDTPEQARRMMSEEA
RRWVVKAGGKLVGGGEGGEEEVSEISPLVSYRGEGLEGRVKGKEVVLPIL
FLE*
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mRNA from alignment at scaffold_5:921749..923365-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2681 ID=mRNA_2681|Name=jgi.p|Nanoce1779_2|625029|organism=Nannochloropsis oceanica|type=mRNA|length=1617bp|location=Sequence derived from alignment at scaffold_5:921749..923365- (Nannochloropsis oceanica)
ACAGAGCCATGGCGGAGGATCAAGGCGCTGAGCGGCTGGCCCGTGTTCGC
GCCGCCTTGAAAGCCGCAGGGCAAGAGCACGTCCTCCATTTTGTCGACGC
GGGCCATGCTACGCCCCATGAGACTACCACCCTTCTTGACCAAGTCGAGG
CACTGGACCTGCCAGCCCTGAACAATATTTTTTCGGGATTGGGAATCAAT
AAGGAGGTGAAACCAGCGGCGGCAGCTGCAGCGGACGAGTACGCGCCGCT
TTCGGAATTGGCCTCGGCTGATAGTACCCCTCCGACCCTTCTCCGAGAAT
GGGAGCAAGCAGGCCTTGGCGCCATTGCCCAAGGCAAGATTGCGGCGTTG
GTGTTAGGTGGTGGACAGGGAACTCGCCTAGGATTTGATGGTCCCAAGGG
TATGTATAAAATTGGGTTGCCCTCGGGCAAGTCCATCTTTCAGCTACTTG
CTGAGAGAGTCTTGCGAGTCTCAACCCTCGCCGCGAGCAGCAGCAGCTGC
TGCAGCAACAGAAAGGGGAAGCATTTACCTTTCTATGTCATGACCAGTCC
TTTGAACCATGAGGCGACGCAACACTTTTTTGAGGAGAACTCTTACTTTG
GATTGACGCCTGCAGATGTCTTTTTCTTCCCCCAGGGCACCATGCCGTGC
TTTGATTTGGAGGGGAAGCTGTTGTTGGCAGGCCCAGGGTCCCTTGCGCA
GGCGCCCGATGGGAATGGAGGTACGTCTCTTCGAGAGATCTCTCACAATG
AACGCGTTTGTTGTCACTCACCCCGATGTCGCCTCCTTTCCCCTCTTCCT
CCCTCGTGCCCGCACAGGCATCTACCCCTCCCTCGCCCGCACGGGCGCAC
TGGCCGATATGCGGCAGCGAGGCGTCGAGGCCTTCCACGTCTTTAGCGTT
GACAACGTATTGATCAAAGTGGCTGATCCATATTTTGTTGGTTTTTGTCT
GAGCCGTGGGAGTGATTGCGGGAACATGGTCGTTTGGAAGGAGGGGGTCG
AGGAGAAAGTAGGGGTGGTGGTGAGGAAGAACGGGCGGCCGGCAGTGGTA
GAATACAGTGAGATGGACGAGGGGATGAAGAGCCTGAGACATCAGCAAGA
GGAAGGTGGGGTAGAGAGAGGAAAATTGGTGTATGGCGCGGGGAATATCT
GCAGTCACTTTTTTACGGTCGATTTTGTTGAGCACGTAGTGGTACCTCGC
TTCGGAAGCGTCTATCACGCGGCTCGGAAAATGATTCCCTCCCTCCCTCC
CTCATCCTCCATCCATCCTCCCGCAGCGGAGGTAAAGACCGCGGGTGTGA
AATTAGAGGCTTTTATATTCGACGTGTTTCCTTTCTCGGAGCGGATGGCT
TTATGGGAGGTGCGAAGGGAGGGAATGTTCGCGGGTGTCAAGGACGCTCC
CGGGGGAAAAGGAGACACGCCTGAACAAGCTCGAAGGATGATGTCGGAGG
AGGCAAGGCGGTGGGTGGTCAAGGCGGGAGGGAAGTTGGTGGGAGGGGGG
GAGGGAGGGGAGGAAGAGGTCTCGGAAATCAGTCCTTTGGTGTCGTACAG
AGGGGAGGGATTGGAGGGGCGGGTGAAGGGGAAGGAGGTGGTGCTACCGA
TTCTGTTCTTGGAGTGA
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Coding sequence (CDS) from alignment at scaffold_5:921749..923365-

>mRNA_2681 ID=mRNA_2681|Name=jgi.p|Nanoce1779_2|625029|organism=Nannochloropsis oceanica|type=CDS|length=3024bp|location=Sequence derived from alignment at scaffold_5:921749..923365- (Nannochloropsis oceanica)
GCATCTACCCCTCCCTCGCCCGCACGGGCGCACTGGCCGATATGCGGCAG
CGAGGCGTCGAGGCCTTCCACGTCTTTAGCGTTGACAACGTATTGATCAA
AGTGGCTGATCCATATTTTGTTGGTTTTTGTCTGAGCCGTGGGAGTGATT
GCGGGAACATGGTCGTTTGGAAGGAGGGGGTCGAGGAGAAAGTAGGGGTG
GTGGTGAGGAAGAACGGGCGGCCGGCAGTGGTAGAATACAGTGAGATGGA
CGAGGGGATGAAGAGCCTGAGACATCAGCAAGAGGAAGGTGGGGTAGAGA
GAGGAAAATTGGTGTATGGCGCGGGGAATATCTGCAGTCACTTTTTTACG
GTCGATTTTGTTGAGCACGTAGTGGTACCTCGCTTCGGAAGCGTCTATCA
CGCGGCTCGGAAAATGATTCCCTCCCTCCCTCCCTCATCCTCCATCCATC
CTCCCGCAGCGGAGGTAAAGACCGCGGGTGTGAAATTAGAGGCTTTTATA
TTCGACGTGTTTCCTTTCTCGGAGCGGATGGCTTTATGGGAGGTGCGAAG
GGAGGGAATGTTCGCGGGTGTCAAGGACGCTCCCGGGGGAAAAGGAGACA
CGCCTGAACAAGCTCGAAGGATGATGTCGGAGGAGGCAAGGCGGTGGGTG
GTCAAGGCGGGAGGGAAGTTGGTGGGAGGGGGGGAGGGAGGGGAGGAAGA
GGTCTCGGAAATCAGTCCTTTGGTGTCGTACAGAGGGGAGGGATTGGAGG
GGCGGGTGAAGGGGAAGGAGGTGGTGCTACCGATTCTGTTCTTGGAGTGA
ATGGCGGAGGATCAAGGCGCTGAGCGGCTGGCCCGTGTTCGCGCCGCCTT
GAAAGCCGCAGGGCAAGAGCACGTCCTCCATTTTGTCGACGCGGGCCATG
CTACGCCCCATGAGACTACCACCCTTCTTGACCAAGTCGAGGCACTGGAC
CTGCCAGCCCTGAACAATATTTTTTCGGGATTGGGAATCAATAAGGAGGT
GAAACCAGCGGCGGCAGCTGCAGCGGACGAGTACGCGCCGCTTTCGGAAT
TGGCCTCGGCTGATAGTACCCCTCCGACCCTTCTCCGAGAATGGGAGCAA
GCAGGCCTTGGCGCCATTGCCCAAGGCAAGATTGCGGCGTTGGTGTTAGG
TGGTGGACAGGGAACTCGCCTAGGATTTGATGGTCCCAAGGGTATGTATA
AAATTGGGTTGCCCTCGGGCAAGTCCATCTTTCAGCTACTTGCTGAGAGA
GTCTTGCGAGTCTCAACCCTCGCCGCGAGCAGCAGCAGCTGCTGCAGCAA
CAGAAAGGGGAAGCATTTACCTTTCTATGTCATGACCAGTCCTTTGAACC
ATGAGGCGACGCAACACTTTTTTGAGGAGAACTCTTACTTTGGATTGACG
CCTGCAGATGTCTTTTTCTTCCCCCAGGGCACCATGCCGTGCTTTGATTT
GGAGGGGAAGCTGTTGTTGGCAGGCCCAGGGTCCCTTGCGCAGGCGCCCG
ATGGGAATGGAGGCATCTACCCCTCCCTCGCCCGCACGGGCGCACTGGCC
GATATGCGGCAGCGAGGCGTCGAGGCCTTCCACGTCTTTAGCGTTGACAA
CGTATTGATCAAAGTGGCTGATCCATATTTTGTTGGTTTTTGTCTGAGCC
GTGGGAGTGATTGCGGGAACATGGTCGTTTGGAAGGAGGGGGTCGAGGAG
AAAGTAGGGGTGGTGGTGAGGAAGAACGGGCGGCCGGCAGTGGTAGAATA
CAGTGAGATGGACGAGGGGATGAAGAGCCTGAGACATCAGCAAGAGGAAG
GTGGGGTAGAGAGAGGAAAATTGGTGTATGGCGCGGGGAATATCTGCAGT
CACTTTTTTACGGTCGATTTTGTTGAGCACGTAGTGGTACCTCGCTTCGG
AAGCGTCTATCACGCGGCTCGGAAAATGATTCCCTCCCTCCCTCCCTCAT
CCTCCATCCATCCTCCCGCAGCGGAGGTAAAGACCGCGGGTGTGAAATTA
GAGGCTTTTATATTCGACGTGTTTCCTTTCTCGGAGCGGATGGCTTTATG
GGAGGTGCGAAGGGAGGGAATGTTCGCGGGTGTCAAGGACGCTCCCGGGG
GAAAAGGAGACACGCCTGAACAAGCTCGAAGGATGATGTCGGAGGAGGCA
AGGCGGTGGGTGGTCAAGGCGGGAGGGAAGTTGGTGGGAGGGGGGGAGGG
AGGGGAGGAAGAGGTCTCGGAAATCAGTCCTTTGGTGTCGTACAGAGGGG
AGGGATTGGAGGGGCGGGTGAAGGGGAAGGAGGTGGTGCTACCGATTCTG
TTCTTGGAGTGAATGGCGGAGGATCAAGGCGCTGAGCGGCTGGCCCGTGT
TCGCGCCGCCTTGAAAGCCGCAGGGCAAGAGCACGTCCTCCATTTTGTCG
ACGCGGGCCATGCTACGCCCCATGAGACTACCACCCTTCTTGACCAAGTC
GAGGCACTGGACCTGCCAGCCCTGAACAATATTTTTTCGGGATTGGGAAT
CAATAAGGAGGTGAAACCAGCGGCGGCAGCTGCAGCGGACGAGTACGCGC
CGCTTTCGGAATTGGCCTCGGCTGATAGTACCCCTCCGACCCTTCTCCGA
GAATGGGAGCAAGCAGGCCTTGGCGCCATTGCCCAAGGCAAGATTGCGGC
GTTGGTGTTAGGTGGTGGACAGGGAACTCGCCTAGGATTTGATGGTCCCA
AGGGTATGTATAAAATTGGGTTGCCCTCGGGCAAGTCCATCTTTCAGCTA
CTTGCTGAGAGAGTCTTGCGAGTCTCAACCCTCGCCGCGAGCAGCAGCAG
CTGCTGCAGCAACAGAAAGGGGAAGCATTTACCTTTCTATGTCATGACCA
GTCCTTTGAACCATGAGGCGACGCAACACTTTTTTGAGGAGAACTCTTAC
TTTGGATTGACGCCTGCAGATGTCTTTTTCTTCCCCCAGGGCACCATGCC
GTGCTTTGATTTGGAGGGGAAGCTGTTGTTGGCAGGCCCAGGGTCCCTTG
CGCAGGCGCCCGATGGGAATGGAG
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Synonyms
Publications