jgi.p|Nanoce1779_2|669267, mRNA_2727 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|669267
Unique Name	mRNA_2727
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1331
Alignment location	scaffold_5:1038667..1039997 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	669353
Track	FilteredModels2
ProteinId	669267

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:1038667..1039997 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|669267	gene_2727	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|669267	mRNA_2727-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2727	CDS_2727	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:1038667..1039997+
coding sequence from alignment at scaffold_5:1038667..1039997+

mRNA sequence

>mRNA_2727 ID=mRNA_2727|Name=jgi.p|Nanoce1779_2|669267|organism=Nannochloropsis oceanica|type=mRNA|length=1331bp
AGCACAGCTCGTTTGAGCAAAGCATTCGATCAAGTTCTACACCATGGCTT
CTGGCGCCGGGAAGCTGACTACCAGCACACGGAGGACGCCTTCTCCTTCT
TCGCATTCGCCCATTCATCCCATCCATGACCACGGCCGACACACGCCGCC
CATTGCTGAAGAGAACCTCAAAAACATCGATCTGGGGAACGTTGGGAGTG
GAGGCGGGCATGAGCACTTGGGGCGTTCGCCTTCCCACGCAGCTGTCGTT
CCAATCCACGCTAACTCAGCCCATGCTTCAGCCTCTTCCTCCGCCTCTGC
ATCCGCATACGAGGAGACATACCCACCAAAACAGAGTCGGGGACACGGAC
GGGGTCATGCAGCATCATCGGTGTGGACGTTGGTTTTGGCTCAAATAAAA
CGGTTCGATATTGAGTTGTCCATAGGTTTCCTCATCACCATTTTTATTTG
CTCCGCCATCGCCGTTTCTGCGCAGGACGAGGGGTGGTTCCTCGCTACAG
CACCATTGGAGAACTTCCCACTCGTCAATACCCTGGCTTCATTCAGCATT
GGTCTTAGCAGCTATGTCACCGAGGCGCATGGTGGAGACGAACAGCTCAC
CCTATACCGACACGAAGGCCCCATTTCTGAGCTTTCTCTTCGAGCAGGAG
ATATTGCCGTGTCCCTGCACATATGCCTTATTGCTTCAGTAGTTTTGTCT
GTAGGTTTGCTCTGGTACGTATTGCAACTTCATGATTACCTGAAGAGCAG
TGAGATTTTGCCTTCGCGCGAACTGACCACGCGTCTCCTGGGCCTCAAGG
CTCTGACGCTTGGCCTGTTGCTGCTGGGGTTGGGAACAGGTGCATTCCGC
GCTGTTATTTGGAATGATTTGAAGGAACATCACAACGACGGCAGCAGTAG
CAGCAGTAGCAGTAGCAGCAGTGGTGGTCCAACGTCGTTTACGAATATTG
AATCAAGCGAGCTCTTCCTCGAGACGCGCTATGCTTATTCTCTCACAATA
GCAGCGTGGTTCCTCTGGCTAGTTGTCGGGTCTATCCTTATGTTACGGCC
GTGTTACCGTAACATAAATATTTATATGATACGGGGCCACGGGCGCGAGG
TTAGCCGCGATGAGGGAGGAGAAGAAGGAAGGAGCTGAGGTGAGAGAGAT
GGAGGGAGTAGAGAAGGAGTTCATGGAGGAGATGCAGGCTGCGGAGGTAT
AGCTTGACAAATGGAATGGAGAATGGTGGCATTGACATGTAGCAAAAGTA
GACATGCTTGGATTTCCTTGAGATAAGTGTTTTATGTGCATGTAAGAAAT
GGAAAAGAAAGAAGCGGAGAACAGTTGCTGG

protein sequence of jgi.p|Nanoce1779_2|669267

>mRNA_2727-protein ID=mRNA_2727-protein|Name=jgi.p|Nanoce1779_2|669267|organism=Nannochloropsis oceanica|type=polypeptide|length=365bp
MASGAGKLTTSTRRTPSPSSHSPIHPIHDHGRHTPPIAEENLKNIDLGNV
GSGGGHEHLGRSPSHAAVVPIHANSAHASASSSASASAYEETYPPKQSRG
HGRGHAASSVWTLVLAQIKRFDIELSIGFLITIFICSAIAVSAQDEGWFL
ATAPLENFPLVNTLASFSIGLSSYVTEAHGGDEQLTLYRHEGPISELSLR
AGDIAVSLHICLIASVVLSVGLLWYVLQLHDYLKSSEILPSRELTTRLLG
LKALTLGLLLLGLGTGAFRAVIWNDLKEHHNDGSSSSSSSSSSGGPTSFT
NIESSELFLETRYAYSLTIAAWFLWLVVGSILMLRPCYRNINIYMIRGHG
REVSRDEGGEEGRS*

mRNA from alignment at scaffold_5:1038667..1039997+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2727 ID=mRNA_2727|Name=jgi.p|Nanoce1779_2|669267|organism=Nannochloropsis oceanica|type=mRNA|length=1331bp|location=Sequence derived from alignment at scaffold_5:1038667..1039997+ (Nannochloropsis oceanica)
AGCACAGCTCGTTTGAGCAAAGCATTCGATCAAGTTCTACACCATGGCTT
CTGGCGCCGGGAAGCTGACTACCAGCACACGGAGGACGCCTTCTCCTTCT
TCGCATTCGCCCATTCATCCCATCCATGACCACGGCCGACACACGCCGCC
CATTGCTGAAGAGAACCTCAAAAACATCGATCTGGGGAACGTTGGGAGTG
GAGGCGGGCATGAGCACTTGGGGCGTTCGCCTTCCCACGCAGCTGTCGTT
CCAATCCACGCTAACTCAGCCCATGCTTCAGCCTCTTCCTCCGCCTCTGC
ATCCGCATACGAGGAGACATACCCACCAAAACAGAGTCGGGGACACGGAC
GGGGTCATGCAGCATCATCGGTGTGGACGTTGGTTTTGGCTCAAATAAAA
CGGTTCGATATTGAGTTGTCCATAGGTTTCCTCATCACCATTTTTATTTG
CTCCGCCATCGCCGTTTCTGCGCAGGACGAGGGGTGGTTCCTCGCTACAG
CACCATTGGAGAACTTCCCACTCGTCAATACCCTGGCTTCATTCAGCATT
GGTCTTAGCAGCTATGTCACCGAGGCGCATGGTGGAGACGAACAGCTCAC
CCTATACCGACACGAAGGCCCCATTTCTGAGCTTTCTCTTCGAGCAGGAG
ATATTGCCGTGTCCCTGCACATATGCCTTATTGCTTCAGTAGTTTTGTCT
GTAGGTTTGCTCTGGTACGTATTGCAACTTCATGATTACCTGAAGAGCAG
TGAGATTTTGCCTTCGCGCGAACTGACCACGCGTCTCCTGGGCCTCAAGG
CTCTGACGCTTGGCCTGTTGCTGCTGGGGTTGGGAACAGGTGCATTCCGC
GCTGTTATTTGGAATGATTTGAAGGAACATCACAACGACGGCAGCAGTAG
CAGCAGTAGCAGTAGCAGCAGTGGTGGTCCAACGTCGTTTACGAATATTG
AATCAAGCGAGCTCTTCCTCGAGACGCGCTATGCTTATTCTCTCACAATA
GCAGCGTGGTTCCTCTGGCTAGTTGTCGGGTCTATCCTTATGTTACGGCC
GTGTTACCGTAACATAAATATTTATATGATACGGGGCCACGGGCGCGAGG
TTAGCCGCGATGAGGGAGGAGAAGAAGGAAGGAGCTGAGGTGAGAGAGAT
GGAGGGAGTAGAGAAGGAGTTCATGGAGGAGATGCAGGCTGCGGAGGTAT
AGCTTGACAAATGGAATGGAGAATGGTGGCATTGACATGTAGCAAAAGTA
GACATGCTTGGATTTCCTTGAGATAAGTGTTTTATGTGCATGTAAGAAAT
GGAAAAGAAAGAAGCGGAGAACAGTTGCTGG

Coding sequence (CDS) from alignment at scaffold_5:1038667..1039997+

>mRNA_2727 ID=mRNA_2727|Name=jgi.p|Nanoce1779_2|669267|organism=Nannochloropsis oceanica|type=CDS|length=1095bp|location=Sequence derived from alignment at scaffold_5:1038667..1039997+ (Nannochloropsis oceanica)
ATGGCTTCTGGCGCCGGGAAGCTGACTACCAGCACACGGAGGACGCCTTC
TCCTTCTTCGCATTCGCCCATTCATCCCATCCATGACCACGGCCGACACA
CGCCGCCCATTGCTGAAGAGAACCTCAAAAACATCGATCTGGGGAACGTT
GGGAGTGGAGGCGGGCATGAGCACTTGGGGCGTTCGCCTTCCCACGCAGC
TGTCGTTCCAATCCACGCTAACTCAGCCCATGCTTCAGCCTCTTCCTCCG
CCTCTGCATCCGCATACGAGGAGACATACCCACCAAAACAGAGTCGGGGA
CACGGACGGGGTCATGCAGCATCATCGGTGTGGACGTTGGTTTTGGCTCA
AATAAAACGGTTCGATATTGAGTTGTCCATAGGTTTCCTCATCACCATTT
TTATTTGCTCCGCCATCGCCGTTTCTGCGCAGGACGAGGGGTGGTTCCTC
GCTACAGCACCATTGGAGAACTTCCCACTCGTCAATACCCTGGCTTCATT
CAGCATTGGTCTTAGCAGCTATGTCACCGAGGCGCATGGTGGAGACGAAC
AGCTCACCCTATACCGACACGAAGGCCCCATTTCTGAGCTTTCTCTTCGA
GCAGGAGATATTGCCGTGTCCCTGCACATATGCCTTATTGCTTCAGTAGT
TTTGTCTGTAGGTTTGCTCTGGTACGTATTGCAACTTCATGATTACCTGA
AGAGCAGTGAGATTTTGCCTTCGCGCGAACTGACCACGCGTCTCCTGGGC
CTCAAGGCTCTGACGCTTGGCCTGTTGCTGCTGGGGTTGGGAACAGGTGC
ATTCCGCGCTGTTATTTGGAATGATTTGAAGGAACATCACAACGACGGCA
GCAGTAGCAGCAGTAGCAGTAGCAGCAGTGGTGGTCCAACGTCGTTTACG
AATATTGAATCAAGCGAGCTCTTCCTCGAGACGCGCTATGCTTATTCTCT
CACAATAGCAGCGTGGTTCCTCTGGCTAGTTGTCGGGTCTATCCTTATGT
TACGGCCGTGTTACCGTAACATAAATATTTATATGATACGGGGCCACGGG
CGCGAGGTTAGCCGCGATGAGGGAGGAGAAGAAGGAAGGAGCTGA

Synonyms

Publications