jgi.p|Nanoce1779_2|583042, mRNA_3687 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583042
Unique NamemRNA_3687
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1972
Alignment locationscaffold_6:963564..965535 -

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Properties
Property NameValue
TranscriptId583128
TrackFilteredModels2
ProteinId583042
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:963564..965535 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583042gene_3687Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583042mRNA_3687-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3687CDS_3687Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3687 ID=mRNA_3687|Name=jgi.p|Nanoce1779_2|583042|organism=Nannochloropsis oceanica|type=mRNA|length=1972bp
ACAGGTGAAGCAGTAGATACTATCACTCGGCCCACCACACCACGCACCCC
CCTACTCCCGCGATACACCTTCACGACGCAACACGCTAGAGCAGCGATGA
AGGCTGTCGCATCCGTAACTACTTTGATGACCTTCATGTTTATTTGTGCC
ACCTCCAGTGCGGCGGCAAGCGTTGCAGTCGCCAGCAGCAGGAGGGGCGG
TGCAGCCTTCGTGGCCGGGGCCGGGAGTGCCATTACGCGTCCTTTTCTCA
AACAGCGGCTGCTGCAGCAGCATCAAGCGTCAACGAATTTTGCCAGGCGC
ATGACTACTTGTATGGCTGCGGTGCGCGTCCGATTTGCGCCCTCGCCAAC
CGGCACTCTGCACGTGGGTGGGGCGCGCACGGCGTTGTACAACTATCTGG
TGGCCCGTCAAAGCAAGGACGGGGCGTTTGTCTTGCGTATTGAAGACACG
GACACGGCCCGGTCGACTCGCGAGTCCGAGGAGAGCATGTTGGCGGATTT
GAGATTCTTGGGATTGGACTGGGATGAAGGGCCTGATAAGCCGGGGGCGG
TTGGGCCTTACAGGCAATCAGAACGAATTGATATTTACAAGAAAATAGCG
CAGCAGTTGCTAGATTCGGGGGATGCGTATCCATGCTTTTGCTCAGAAGA
AGAGTTGGAGGAAAAGAGGAAGGCGGCTGAGGCGGCGGGGAAGCCACCGC
AATACGATAGGACCTGGCGCGATGCAGACCCGGTGGAGGTGAAGAAGCGG
ATGGATGCAGGTGAGCCTTACACAGTTCGATTTAAGGTCGCCCCGGGGAG
GAGGGTAGAGATCGATGATGCTGTGCGAGGGACCGTCGGATGGGACGCGG
ATGCTACGGTGGGTGACTTCATTTTGTTGAGGAGTAGTGGCATGCCGGTT
TATAATTTTTGTGTGGCTGTGGACGATGCCTTGATGGGGATTACGACTGT
GATTCGCGCCGAGGAGCATCTAACGAATACGTTGAGGCAGTGTTTGATTC
TGGAGGCGCTGAAGTATCCGCCACCGAAGTATGCACATTGTAGTCTAATT
TTGGGGGAGGATAGGAGTAAGTTGAGTAAGAGGCATGGGGCGACGAGCGT
GGACCAGTTCAAGGCGGAAGGATTTTTGCCGGACGCCATGTTGAATTATC
TGGCGTTGCTTGGGTGGAACGACGGGACGGAGCAGGAGGTGTTTGATCGC
TCAGAGTTGATCAAGAAGTTTTCCTTGAACCGCGTGGTCAAGAGTCCATC
CGTGTTTGATATGGCCAAGTTGAGGTGGATGAATGGACAGCACTTGAGGG
CATTGTCCGATGAGGAGCTCGTGCCTCTTGTGGAAGCACAATTGATTAGT
GCAGGGGTAGCGAAGGAGGGGGCAGGGGAGGACGGGAAAACGTTTGTGGT
GCATGCAACGCAGGTGGCAAAGGGGTCAATGGAGCTTGTGAACGACGCAA
CGACGATCGTGGGGGACGTGCTGACCTACCCGTTGGCTTCGACGTTGGAG
GCTGGGGAGGCCGAGACGCTTGTAGCGGAGGGGTTGTGGGATATGGCACG
AGAGGTAGTGCGTGCGTATGAGGCGAATGAGATGCCTACAGGAGGGGAGG
AGGATTTCCAAGTGTTGTGGAAGGCCTGGATTAAGGCGGTAGGAAAGAAG
ATGGGGAAAAAGGGGAAGCAGCTCTTTCACCCGATTCGGTTGGCCTTGAC
GGGACGAATGAGCGGTCCGGACGTTGGGGAGCAGGTGAAATTGTTGCACT
TGGCAGACAAAGCGGCTGTAAACATGGTGGGCTTGCCGGCGCGGATTGGC
GAGCTGAAGGAGGTGTTGAGCAAGCATCCCGCCGAGAAGGAGCCCGTGGC
TGGGTAGAGGTACATGAGAGATGGGAAGGGAGATGTCTGAGGAGTTTGGC
GCGAAAGAGGCAAACGATCAAAGGAAATTCAAAAAGAAGGAAAGCAAAAC
GATATAGAGATCGATACGAAAT
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protein sequence of jgi.p|Nanoce1779_2|583042

>mRNA_3687-protein ID=mRNA_3687-protein|Name=jgi.p|Nanoce1779_2|583042|organism=Nannochloropsis oceanica|type=polypeptide|length=587bp
MKAVASVTTLMTFMFICATSSAAASVAVASSRRGGAAFVAGAGSAITRPF
LKQRLLQQHQASTNFARRMTTCMAAVRVRFAPSPTGTLHVGGARTALYNY
LVARQSKDGAFVLRIEDTDTARSTRESEESMLADLRFLGLDWDEGPDKPG
AVGPYRQSERIDIYKKIAQQLLDSGDAYPCFCSEEELEEKRKAAEAAGKP
PQYDRTWRDADPVEVKKRMDAGEPYTVRFKVAPGRRVEIDDAVRGTVGWD
ADATVGDFILLRSSGMPVYNFCVAVDDALMGITTVIRAEEHLTNTLRQCL
ILEALKYPPPKYAHCSLILGEDRSKLSKRHGATSVDQFKAEGFLPDAMLN
YLALLGWNDGTEQEVFDRSELIKKFSLNRVVKSPSVFDMAKLRWMNGQHL
RALSDEELVPLVEAQLISAGVAKEGAGEDGKTFVVHATQVAKGSMELVND
ATTIVGDVLTYPLASTLEAGEAETLVAEGLWDMAREVVRAYEANEMPTGG
EEDFQVLWKAWIKAVGKKMGKKGKQLFHPIRLALTGRMSGPDVGEQVKLL
HLADKAAVNMVGLPARIGELKEVLSKHPAEKEPVAG*
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mRNA from alignment at scaffold_6:963564..965535-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3687 ID=mRNA_3687|Name=jgi.p|Nanoce1779_2|583042|organism=Nannochloropsis oceanica|type=mRNA|length=1972bp|location=Sequence derived from alignment at scaffold_6:963564..965535- (Nannochloropsis oceanica)
ACAGGTGAAGCAGTAGATACTATCACTCGGCCCACCACACCACGCACCCC
CCTACTCCCGCGATACACCTTCACGACGCAACACGCTAGAGCAGCGATGA
AGGCTGTCGCATCCGTAACTACTTTGATGACCTTCATGTTTATTTGTGCC
ACCTCCAGTGCGGCGGCAAGCGTTGCAGTCGCCAGCAGCAGGAGGGGCGG
TGCAGCCTTCGTGGCCGGGGCCGGGAGTGCCATTACGCGTCCTTTTCTCA
AACAGCGGCTGCTGCAGCAGCATCAAGCGTCAACGAATTTTGCCAGGCGC
ATGACTACTTGTATGGCTGCGGTGCGCGTCCGATTTGCGCCCTCGCCAAC
CGGCACTCTGCACGTGGGTGGGGCGCGCACGGCGTTGTACAACTATCTGG
TGGCCCGTCAAAGCAAGGACGGGGCGTTTGTCTTGCGTATTGAAGACACG
GACACGGCCCGGTCGACTCGCGAGTCCGAGGAGAGCATGTTGGCGGATTT
GAGATTCTTGGGATTGGACTGGGATGAAGGGCCTGATAAGCCGGGGGCGG
TTGGGCCTTACAGGCAATCAGAACGAATTGATATTTACAAGAAAATAGCG
CAGCAGTTGCTAGATTCGGGGGATGCGTATCCATGCTTTTGCTCAGAAGA
AGAGTTGGAGGAAAAGAGGAAGGCGGCTGAGGCGGCGGGGAAGCCACCGC
AATACGATAGGACCTGGCGCGATGCAGACCCGGTGGAGGTGAAGAAGCGG
ATGGATGCAGGTGAGCCTTACACAGTTCGATTTAAGGTCGCCCCGGGGAG
GAGGGTAGAGATCGATGATGCTGTGCGAGGGACCGTCGGATGGGACGCGG
ATGCTACGGTGGGTGACTTCATTTTGTTGAGGAGTAGTGGCATGCCGGTT
TATAATTTTTGTGTGGCTGTGGACGATGCCTTGATGGGGATTACGACTGT
GATTCGCGCCGAGGAGCATCTAACGAATACGTTGAGGCAGTGTTTGATTC
TGGAGGCGCTGAAGTATCCGCCACCGAAGTATGCACATTGTAGTCTAATT
TTGGGGGAGGATAGGAGTAAGTTGAGTAAGAGGCATGGGGCGACGAGCGT
GGACCAGTTCAAGGCGGAAGGATTTTTGCCGGACGCCATGTTGAATTATC
TGGCGTTGCTTGGGTGGAACGACGGGACGGAGCAGGAGGTGTTTGATCGC
TCAGAGTTGATCAAGAAGTTTTCCTTGAACCGCGTGGTCAAGAGTCCATC
CGTGTTTGATATGGCCAAGTTGAGGTGGATGAATGGACAGCACTTGAGGG
CATTGTCCGATGAGGAGCTCGTGCCTCTTGTGGAAGCACAATTGATTAGT
GCAGGGGTAGCGAAGGAGGGGGCAGGGGAGGACGGGAAAACGTTTGTGGT
GCATGCAACGCAGGTGGCAAAGGGGTCAATGGAGCTTGTGAACGACGCAA
CGACGATCGTGGGGGACGTGCTGACCTACCCGTTGGCTTCGACGTTGGAG
GCTGGGGAGGCCGAGACGCTTGTAGCGGAGGGGTTGTGGGATATGGCACG
AGAGGTAGTGCGTGCGTATGAGGCGAATGAGATGCCTACAGGAGGGGAGG
AGGATTTCCAAGTGTTGTGGAAGGCCTGGATTAAGGCGGTAGGAAAGAAG
ATGGGGAAAAAGGGGAAGCAGCTCTTTCACCCGATTCGGTTGGCCTTGAC
GGGACGAATGAGCGGTCCGGACGTTGGGGAGCAGGTGAAATTGTTGCACT
TGGCAGACAAAGCGGCTGTAAACATGGTGGGCTTGCCGGCGCGGATTGGC
GAGCTGAAGGAGGTGTTGAGCAAGCATCCCGCCGAGAAGGAGCCCGTGGC
TGGGTAGAGGTACATGAGAGATGGGAAGGGAGATGTCTGAGGAGTTTGGC
GCGAAAGAGGCAAACGATCAAAGGAAATTCAAAAAGAAGGAAAGCAAAAC
GATATAGAGATCGATACGAAAT
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Coding sequence (CDS) from alignment at scaffold_6:963564..965535-

>mRNA_3687 ID=mRNA_3687|Name=jgi.p|Nanoce1779_2|583042|organism=Nannochloropsis oceanica|type=CDS|length=1761bp|location=Sequence derived from alignment at scaffold_6:963564..965535- (Nannochloropsis oceanica)
ATGAAGGCTGTCGCATCCGTAACTACTTTGATGACCTTCATGTTTATTTG
TGCCACCTCCAGTGCGGCGGCAAGCGTTGCAGTCGCCAGCAGCAGGAGGG
GCGGTGCAGCCTTCGTGGCCGGGGCCGGGAGTGCCATTACGCGTCCTTTT
CTCAAACAGCGGCTGCTGCAGCAGCATCAAGCGTCAACGAATTTTGCCAG
GCGCATGACTACTTGTATGGCTGCGGTGCGCGTCCGATTTGCGCCCTCGC
CAACCGGCACTCTGCACGTGGGTGGGGCGCGCACGGCGTTGTACAACTAT
CTGGTGGCCCGTCAAAGCAAGGACGGGGCGTTTGTCTTGCGTATTGAAGA
CACGGACACGGCCCGGTCGACTCGCGAGTCCGAGGAGAGCATGTTGGCGG
ATTTGAGATTCTTGGGATTGGACTGGGATGAAGGGCCTGATAAGCCGGGG
GCGGTTGGGCCTTACAGGCAATCAGAACGAATTGATATTTACAAGAAAAT
AGCGCAGCAGTTGCTAGATTCGGGGGATGCGTATCCATGCTTTTGCTCAG
AAGAAGAGTTGGAGGAAAAGAGGAAGGCGGCTGAGGCGGCGGGGAAGCCA
CCGCAATACGATAGGACCTGGCGCGATGCAGACCCGGTGGAGGTGAAGAA
GCGGATGGATGCAGGTGAGCCTTACACAGTTCGATTTAAGGTCGCCCCGG
GGAGGAGGGTAGAGATCGATGATGCTGTGCGAGGGACCGTCGGATGGGAC
GCGGATGCTACGGTGGGTGACTTCATTTTGTTGAGGAGTAGTGGCATGCC
GGTTTATAATTTTTGTGTGGCTGTGGACGATGCCTTGATGGGGATTACGA
CTGTGATTCGCGCCGAGGAGCATCTAACGAATACGTTGAGGCAGTGTTTG
ATTCTGGAGGCGCTGAAGTATCCGCCACCGAAGTATGCACATTGTAGTCT
AATTTTGGGGGAGGATAGGAGTAAGTTGAGTAAGAGGCATGGGGCGACGA
GCGTGGACCAGTTCAAGGCGGAAGGATTTTTGCCGGACGCCATGTTGAAT
TATCTGGCGTTGCTTGGGTGGAACGACGGGACGGAGCAGGAGGTGTTTGA
TCGCTCAGAGTTGATCAAGAAGTTTTCCTTGAACCGCGTGGTCAAGAGTC
CATCCGTGTTTGATATGGCCAAGTTGAGGTGGATGAATGGACAGCACTTG
AGGGCATTGTCCGATGAGGAGCTCGTGCCTCTTGTGGAAGCACAATTGAT
TAGTGCAGGGGTAGCGAAGGAGGGGGCAGGGGAGGACGGGAAAACGTTTG
TGGTGCATGCAACGCAGGTGGCAAAGGGGTCAATGGAGCTTGTGAACGAC
GCAACGACGATCGTGGGGGACGTGCTGACCTACCCGTTGGCTTCGACGTT
GGAGGCTGGGGAGGCCGAGACGCTTGTAGCGGAGGGGTTGTGGGATATGG
CACGAGAGGTAGTGCGTGCGTATGAGGCGAATGAGATGCCTACAGGAGGG
GAGGAGGATTTCCAAGTGTTGTGGAAGGCCTGGATTAAGGCGGTAGGAAA
GAAGATGGGGAAAAAGGGGAAGCAGCTCTTTCACCCGATTCGGTTGGCCT
TGACGGGACGAATGAGCGGTCCGGACGTTGGGGAGCAGGTGAAATTGTTG
CACTTGGCAGACAAAGCGGCTGTAAACATGGTGGGCTTGCCGGCGCGGAT
TGGCGAGCTGAAGGAGGTGTTGAGCAAGCATCCCGCCGAGAAGGAGCCCG
TGGCTGGGTAG
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Synonyms
Publications