jgi.p|Nanoce1779_2|583071, mRNA_3691 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583071
Unique NamemRNA_3691
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length790
Alignment locationscaffold_6:987435..988224 -

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Properties
Property NameValue
TranscriptId583157
TrackFilteredModels2
ProteinId583071
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:987435..988224 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583071gene_3691Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583071mRNA_3691-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3691CDS_3691Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3691 ID=mRNA_3691|Name=jgi.p|Nanoce1779_2|583071|organism=Nannochloropsis oceanica|type=mRNA|length=790bp
TCCCCAGCCATGCCACCACTGCCACTGCCAATTGTGTTCACACCTATGAA
TCCGAAACTTCCTGCGCTCTTGACCGCCCCTCCCGTAGTACTGCTGCTGC
TTTTGCCAGCAGTCCGCCCGACCCCACCAGCAGGAGGACGAGGGAGCCCG
GGCCGACCCAAAATGCCACCACGCGAAGGTAAAAGGAAGGAGGAAGCAGG
TAGTGGAGGCAAGGTGGCGGAGGAAGAGATGGGAGCAGGGGGAATGTCGG
AGTCGGAGTCGCTGCCGGCGTTGTTGTGGTAGTGGTAGTGGTAAGGGGGG
AGCGGGCCGGTTTTGCTCCGACTGCGGCTAGGAGTATTCGAAGAAATGGT
AGACGCAGCCGGTTGCTCGTGGTCCGATAATTCGTACGCCTCTAAGGAAT
GCAAGACGGAGGTTAACAAATGATTGCGGCTAGGCGTATCAAAGGTGTTC
GGGGAGGCTGCTAGGGAACGCGGAGAAGCAGCGGCGGACGACGCGGCGGA
GTAACCACCGGTGTTCTTGTTAGCGAGAAGATTCGCCAGGTCGTCCTCCA
ATTCTTCTTCGTTGTCGGCCAGGAGATGATGGGGACGGTGGTCGTGGTGC
TGCTCCTCTCCGACTTGCTGCATACTGGTTTCTGAGGCAGGATGGGAGGG
AGCAGCAACTGGAGGCGGAGGGATCTTGCTGGCGCTGGCGCTGGCGCTGG
CACTTGTGCGTTTTACGAAGAAGGAGTGGCGCCCAGGAAAACTTTTCGTT
GTCTGGGACATGGTGCCCTGGCTTGTGGACAACGGTCTGT
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protein sequence of jgi.p|Nanoce1779_2|583071

>mRNA_3691-protein ID=mRNA_3691-protein|Name=jgi.p|Nanoce1779_2|583071|organism=Nannochloropsis oceanica|type=polypeptide|length=91bp
MPPLPLPIVFTPMNPKLPALLTAPPVVLLLLLPAVRPTPPAGGRGSPGRP
KMPPREGKRKEEAGSGGKVAEEEMGAGGMSESESLPALLW*
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mRNA from alignment at scaffold_6:987435..988224-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3691 ID=mRNA_3691|Name=jgi.p|Nanoce1779_2|583071|organism=Nannochloropsis oceanica|type=mRNA|length=790bp|location=Sequence derived from alignment at scaffold_6:987435..988224- (Nannochloropsis oceanica)
TCCCCAGCCATGCCACCACTGCCACTGCCAATTGTGTTCACACCTATGAA
TCCGAAACTTCCTGCGCTCTTGACCGCCCCTCCCGTAGTACTGCTGCTGC
TTTTGCCAGCAGTCCGCCCGACCCCACCAGCAGGAGGACGAGGGAGCCCG
GGCCGACCCAAAATGCCACCACGCGAAGGTAAAAGGAAGGAGGAAGCAGG
TAGTGGAGGCAAGGTGGCGGAGGAAGAGATGGGAGCAGGGGGAATGTCGG
AGTCGGAGTCGCTGCCGGCGTTGTTGTGGTAGTGGTAGTGGTAAGGGGGG
AGCGGGCCGGTTTTGCTCCGACTGCGGCTAGGAGTATTCGAAGAAATGGT
AGACGCAGCCGGTTGCTCGTGGTCCGATAATTCGTACGCCTCTAAGGAAT
GCAAGACGGAGGTTAACAAATGATTGCGGCTAGGCGTATCAAAGGTGTTC
GGGGAGGCTGCTAGGGAACGCGGAGAAGCAGCGGCGGACGACGCGGCGGA
GTAACCACCGGTGTTCTTGTTAGCGAGAAGATTCGCCAGGTCGTCCTCCA
ATTCTTCTTCGTTGTCGGCCAGGAGATGATGGGGACGGTGGTCGTGGTGC
TGCTCCTCTCCGACTTGCTGCATACTGGTTTCTGAGGCAGGATGGGAGGG
AGCAGCAACTGGAGGCGGAGGGATCTTGCTGGCGCTGGCGCTGGCGCTGG
CACTTGTGCGTTTTACGAAGAAGGAGTGGCGCCCAGGAAAACTTTTCGTT
GTCTGGGACATGGTGCCCTGGCTTGTGGACAACGGTCTGT
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Coding sequence (CDS) from alignment at scaffold_6:987435..988224-

>mRNA_3691 ID=mRNA_3691|Name=jgi.p|Nanoce1779_2|583071|organism=Nannochloropsis oceanica|type=CDS|length=273bp|location=Sequence derived from alignment at scaffold_6:987435..988224- (Nannochloropsis oceanica)
ATGCCACCACTGCCACTGCCAATTGTGTTCACACCTATGAATCCGAAACT
TCCTGCGCTCTTGACCGCCCCTCCCGTAGTACTGCTGCTGCTTTTGCCAG
CAGTCCGCCCGACCCCACCAGCAGGAGGACGAGGGAGCCCGGGCCGACCC
AAAATGCCACCACGCGAAGGTAAAAGGAAGGAGGAAGCAGGTAGTGGAGG
CAAGGTGGCGGAGGAAGAGATGGGAGCAGGGGGAATGTCGGAGTCGGAGT
CGCTGCCGGCGTTGTTGTGGTAG
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Synonyms
Publications