Properties
| Property Name | Value |
|---|
| TranscriptId | 629046 |
| Track | FilteredModels2 |
| ProteinId | 628960 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_6 | supercontig | scaffold_6:630223..632361 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3548 ID=mRNA_3548|Name=jgi.p|Nanoce1779_2|628960|organism=Nannochloropsis oceanica|type=mRNA|length=1987bp
CGAAGCAGTCGAGGTCTGCGGCAGAAGCTTTCGCGCAATACCAAGCCAAC
GCTGCCGCCAAACAATGTATGTGCTGCGTCCTTTAGGTGGCTGGAATGGA
CTGTGCGCCTCAATTTTTGGGGTTATTAAGGAGGAGGTTGAATACAACAC
AAAATCCGCTCCCACACCACTTTACAGGATGGCCAAAGAGAGCGACGACG
ACAAACCAGACAAGGGAAAGGATGAAGCGGGCCTGTGCGGGCTGGTCTTG
GCCGAGGTGGTCATGGAGATCATTGAGAAGGCCGACTTCTTCCCTGCGCT
TGGCCAGTGCAATGCTTCCAAAGGCATACAGGGCCTACAACATCAGGTCC
AAGCGCGCAAGCTCTCATCGTTGCGACTGGACGTTCTCGACAACTTGGTA
TCTCCCTTCCTCCTACTTGCGGCGGCCGAAAAGATGTATTATTCTGGCGC
GGACCTGACGGAAAGCTGTGCGGGGCCACTGCCCATGTACGAAGAGGTCC
ATTCAGACCTGGGCACGCTCCTGCAGCTTTTCCAACCACATGCCAAATCG
GCTTTTGTACCTTTGCTACAAATTGCACAAATCGTTGTCGAAATTCGGAT
ATGGCTTTGTCGGTGGTACCTGCTTGACGACTCTTCTGCCGGCCCCTTGT
CCGCGGCCCCAATAGAGGGGCCGGAGGCACAAGCCGCCAGGCAAGACCCA
CTGTCCACCTTGACAGCGCAGATGCAACGCTTACAAAAATGTAAATCGCA
TTGGAAAGGGCACCTCACGGATCTACTTCCTTGGATGGAGGTGGTGCTCG
TGGAAGGCAAGACGGTCGATATATGTTTACGAGCGCTCGCATCATTGAAC
CGTCACCCTCCCGACCTTCTTTCCGTCACCGTCCAGCTGCTCCGCATGCG
CAAGGCAATCGGCCTGTGGGAGGACGAATCAGTTATACAACCTCCAGCTT
CAGAGAGGGATGTCGTAATTAGGGCTCCGCGATACCAGCTTTTGCGTCAG
CTGTTCCAGCACCTCATCAATAAAATGCCTCTGCGCTTTCACGCTGTGGC
TGATCAGGTCATGCCCCTGTCCAAGTATAATACCGAGCTGTTGGGTCTGC
CCTCATCCTCTTCATCTCTTTCTCCTCACCATAGCAGCAGTGACAGTGGC
AGCTCCAATCCCTATGTCGCTTTAATTGCACGCTTTCTGCTCTCATACGG
CCCCGCCGCCAAGGTCTGTGTCAGCATCTTTAAACAGACCAGTGAAGGAG
CGGCGGAAAAGGAGGTGGTCAACACCTCCACCAACAAAAACCACCGGGCA
CCGGAAGAGGGTCATGCCTACGACTTGCCTTGCGTAAGGGGCTCACTGAC
AGCACCATCGCAGCGGCAGGATATCTTGGACCGTGGATTTGTGCCAACCT
TTTCCATGACTTCGGGTAAAGCTGCGGCGGCAAGCGGCAGCAAGCAGCAC
AGCAGCGCGCGATACGTGACGGTATCGTCCTCATCTTCCGCCTTGGCCTC
CGAGCCCCCCTTAGGCCGCCTCTCATCTTCATCGTCATCAAAAGTGCCTG
GCATGGGAATCACGACGGTGGGTTCGGAGCTTAGTGGATCATTTACCTCC
ACCTCCTCATCTTCCTCGTCAGCACGTCGAGACCACGGCCCACCACCCTG
GTTTTGGGCGCTGTGCCACCATAGCGGCTTGTGGTTGGCAGTAGAAGGGC
GATTGCCAGAGGGGGGAGCTCAGCGATTCTCCCTTTCGGGCGCCAGGGGG
GAAGGAGGGGGTAAAGGACAAGTTAGCGGACCCAGGGCGTCACCTTTGGA
AGGAACGTTCATCCATCAAAGCGGCAAACACCACACCTTCACCTACTTTG
TTGCGCATGTCTCGCCGGAGGAACGACTGGTGGTGGCTTTTGGAGACCGC
ATCTGTCCTGCAAATGACAAGACAGTGACTTCCTTTCTCAGGACGGCGAC
ATCTTTCCTCAACGATAGAATTGCACACGGGGTGTAA back to topprotein sequence of jgi.p|Nanoce1779_2|628960 >mRNA_3548-protein ID=mRNA_3548-protein|Name=jgi.p|Nanoce1779_2|628960|organism=Nannochloropsis oceanica|type=polypeptide|length=641bp
MYVLRPLGGWNGLCASIFGVIKEEVEYNTKSAPTPLYRMAKESDDDKPDK
GKDEAGLCGLVLAEVVMEIIEKADFFPALGQCNASKGIQGLQHQVQARKL
SSLRLDVLDNLVSPFLLLAAAEKMYYSGADLTESCAGPLPMYEEVHSDLG
TLLQLFQPHAKSAFVPLLQIAQIVVEIRIWLCRWYLLDDSSAGPLSAAPI
EGPEAQAARQDPLSTLTAQMQRLQKCKSHWKGHLTDLLPWMEVVLVEGKT
VDICLRALASLNRHPPDLLSVTVQLLRMRKAIGLWEDESVIQPPASERDV
VIRAPRYQLLRQLFQHLINKMPLRFHAVADQVMPLSKYNTELLGLPSSSS
SLSPHHSSSDSGSSNPYVALIARFLLSYGPAAKVCVSIFKQTSEGAAEKE
VVNTSTNKNHRAPEEGHAYDLPCVRGSLTAPSQRQDILDRGFVPTFSMTS
GKAAAASGSKQHSSARYVTVSSSSSALASEPPLGRLSSSSSSKVPGMGIT
TVGSELSGSFTSTSSSSSSARRDHGPPPWFWALCHHSGLWLAVEGRLPEG
GAQRFSLSGARGEGGGKGQVSGPRASPLEGTFIHQSGKHHTFTYFVAHVS
PEERLVVAFGDRICPANDKTVTSFLRTATSFLNDRIAHGV* back to topmRNA from alignment at scaffold_6:630223..632361+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3548 ID=mRNA_3548|Name=jgi.p|Nanoce1779_2|628960|organism=Nannochloropsis oceanica|type=mRNA|length=2139bp|location=Sequence derived from alignment at scaffold_6:630223..632361+ (Nannochloropsis oceanica)
CGAAGCAGTCGAGGTCTGCGGCAGAAGCTTTCGCGCAATACCAAGCCAAC
GCTGCCGCCAAACAATGTATGTGCTGCGTCCTTTAGGTGGCTGGAATGGA
CTGTGCGCCTCAATTTTTGGGGTTATTAAGGAGGAGGTTGAATACAACAC
AAAATCCGCTCCCACACCACTTTACAGGATGGCCAAAGAGAGCGACGACG
ACAAACCAGACAAGGGAAAGGATGAAGCGGGCCTGTGCGGGCTGGTCTTG
GCCGAGGTGGTCATGGAGATCATTGAGAAGGCCGACTTCTTCCCTGCGCT
TGGCCAGTGCAATGCTTCCAAAGGCATACAGGGCCTACAACATCAGGTCC
AAGCGCGCAAGCTCTCATCGTTGCGACTGGACGTTCTCGACAACTTGGTA
TCTCCCTTCCTCCTACTTGCGGCGGCCGAAAAGATGTAGGTTTTTCGTAG
GAAAATAGTTAGCTAGACGTCTGGGTACGTTGCCATCACAGAAGACTCCT
TCCCCACCCACATCTAATCTTGCATTCGTAGCGAAGAAAAACAAATGGAA
TATTACATCGACTCACCTAAGATGTGTCCACGCACAGGTATTATTCTGGC
GCGGACCTGACGGAAAGCTGTGCGGGGCCACTGCCCATGTACGAAGAGGT
CCATTCAGACCTGGGCACGCTCCTGCAGCTTTTCCAACCACATGCCAAAT
CGGCTTTTGTACCTTTGCTACAAATTGCACAAATCGTTGTCGAAATTCGG
ATATGGCTTTGTCGGTGGTACCTGCTTGACGACTCTTCTGCCGGCCCCTT
GTCCGCGGCCCCAATAGAGGGGCCGGAGGCACAAGCCGCCAGGCAAGACC
CACTGTCCACCTTGACAGCGCAGATGCAACGCTTACAAAAATGTAAATCG
CATTGGAAAGGGCACCTCACGGATCTACTTCCTTGGATGGAGGTGGTGCT
CGTGGAAGGCAAGACGGTCGATATATGTTTACGAGCGCTCGCATCATTGA
ACCGTCACCCTCCCGACCTTCTTTCCGTCACCGTCCAGCTGCTCCGCATG
CGCAAGGCAATCGGCCTGTGGGAGGACGAATCAGTTATACAACCTCCAGC
TTCAGAGAGGGATGTCGTAATTAGGGCTCCGCGATACCAGCTTTTGCGTC
AGCTGTTCCAGCACCTCATCAATAAAATGCCTCTGCGCTTTCACGCTGTG
GCTGATCAGGTCATGCCCCTGTCCAAGTATAATACCGAGCTGTTGGGTCT
GCCCTCATCCTCTTCATCTCTTTCTCCTCACCATAGCAGCAGTGACAGTG
GCAGCTCCAATCCCTATGTCGCTTTAATTGCACGCTTTCTGCTCTCATAC
GGCCCCGCCGCCAAGGTCTGTGTCAGCATCTTTAAACAGACCAGTGAAGG
AGCGGCGGAAAAGGAGGTGGTCAACACCTCCACCAACAAAAACCACCGGG
CACCGGAAGAGGGTCATGCCTACGACTTGCCTTGCGTAAGGGGCTCACTG
ACAGCACCATCGCAGCGGCAGGATATCTTGGACCGTGGATTTGTGCCAAC
CTTTTCCATGACTTCGGGTAAAGCTGCGGCGGCAAGCGGCAGCAAGCAGC
ACAGCAGCGCGCGATACGTGACGGTATCGTCCTCATCTTCCGCCTTGGCC
TCCGAGCCCCCCTTAGGCCGCCTCTCATCTTCATCGTCATCAAAAGTGCC
TGGCATGGGAATCACGACGGTGGGTTCGGAGCTTAGTGGATCATTTACCT
CCACCTCCTCATCTTCCTCGTCAGCACGTCGAGACCACGGCCCACCACCC
TGGTTTTGGGCGCTGTGCCACCATAGCGGCTTGTGGTTGGCAGTAGAAGG
GCGATTGCCAGAGGGGGGAGCTCAGCGATTCTCCCTTTCGGGCGCCAGGG
GGGAAGGAGGGGGTAAAGGACAAGTTAGCGGACCCAGGGCGTCACCTTTG
GAAGGAACGTTCATCCATCAAAGCGGCAAACACCACACCTTCACCTACTT
TGTTGCGCATGTCTCGCCGGAGGAACGACTGGTGGTGGCTTTTGGAGACC
GCATCTGTCCTGCAAATGACAAGACAGTGACTTCCTTTCTCAGGACGGCG
ACATCTTTCCTCAACGATAGAATTGCACACGGGGTGTAA back to topCoding sequence (CDS) from alignment at scaffold_6:630223..632361+ >mRNA_3548 ID=mRNA_3548|Name=jgi.p|Nanoce1779_2|628960|organism=Nannochloropsis oceanica|type=CDS|length=3846bp|location=Sequence derived from alignment at scaffold_6:630223..632361+ (Nannochloropsis oceanica)
ATGTATGTGCTGCGTCCTTTAGGTGGCTGGAATGGACTGTGCGCCTCAAT
TTTTGGGGTTATTAAGGAGGAGGTTGAATACAACACAAAATCCGCTCCCA
CACCACTTTACAGGATGGCCAAAGAGAGCGACGACGACAAACCAGACAAG
GGAAAGGATGAAGCGGGCCTGTGCGGGCTGGTCTTGGCCGAGGTGGTCAT
GGAGATCATTGAGAAGGCCGACTTCTTCCCTGCGCTTGGCCAGTGCAATG
CTTCCAAAGGCATACAGGGCCTACAACATCAGGTCCAAGCGCGCAAGCTC
TCATCGTTGCGACTGGACGTTCTCGACAACTTGGTATCTCCCTTCCTCCT
ACTTGCGGCGGCCGAAAAGATGTATTATTCTGGCGCGGACCTGACGGAAA
GCTGTGCGGGGCCACTGCCCATGTACGAAGAGGTCCATTCAGACCTGGGC
ACGCTCCTGCAGCTTTTCCAACCACATGCCAAATCGGCTTTTGTACCTTT
GCTACAAATTGCACAAATCGTTGTCGAAATTCGGATATGGCTTTGTCGGT
GGTACCTGCTTGACGACTCTTCTGCCGGCCCCTTGTCCGCGGCCCCAATA
GAGGGGCCGGAGGCACAAGCCGCCAGGCAAGACCCACTGTCCACCTTGAC
AGCGCAGATGCAACGCTTACAAAAATGTAAATCGCATTGGAAAGGGCACC
TCACGGATCTACTTCCTTGGATGGAGGTGGTGCTCGTGGAAGGCAAGACG
GTCGATATATGTTTACGAGCGCTCGCATCATTGAACCGTCACCCTCCCGA
CCTTCTTTCCGTCACCGTCCAGCTGCTCCGCATGCGCAAGGCAATCGGCC
TGTGGGAGGACGAATCAGTTATACAACCTCCAGCTTCAGAGAGGGATGTC
GTAATTAGGGCTCCGCGATACCAGCTTTTGCGTCAGCTGTTCCAGCACCT
CATCAATAAAATGCCTCTGCGCTTTCACGCTGTGGCTGATCAGGTCATGC
CCCTGTCCAAGTATAATACCGAGCTGTTGGGTCTGCCCTCATCCTCTTCA
TCTCTTTCTCCTCACCATAGCAGCAGTGACAGTGGCAGCTCCAATCCCTA
TGTCGCTTTAATTGCACGCTTTCTGCTCTCATACGGCCCCGCCGCCAAGG
TCTGTGTCAGCATCTTTAAACAGACCAGTGAAGGAGCGGCGGAAAAGGAG
GTGGTCAACACCTCCACCAACAAAAACCACCGGGCACCGGAAGAGGGTCA
TGCCTACGACTTGCCTTGCGTAAGGGGCTCACTGACAGCACCATCGCAGC
GGCAGGATATCTTGGACCGTGGATTTGTGCCAACCTTTTCCATGACTTCG
GGTAAAGCTGCGGCGGCAAGCGGCAGCAAGCAGCACAGCAGCGCGCGATA
CGTGACGGTATCGTCCTCATCTTCCGCCTTGGCCTCCGAGCCCCCCTTAG
GCCGCCTCTCATCTTCATCGTCATCAAAAGTGCCTGGCATGGGAATCACG
ACGGTGGGTTCGGAGCTTAGTGGATCATTTACCTCCACCTCCTCATCTTC
CTCGTCAGCACGTCGAGACCACGGCCCACCACCCTGGTTTTGGGCGCTGT
GCCACCATAGCGGCTTGTGGTTGGCAGTAGAAGGGCGATTGCCAGAGGGG
GGAGCTCAGCGATTCTCCCTTTCGGGCGCCAGGGGGGAAGGAGGGGGTAA
AGGACAAGTTAGCGGACCCAGGGCGTCACCTTTGGAAGGAACGTTCATCC
ATCAAAGCGGCAAACACCACACCTTCACCTACTTTGTTGCGCATGTCTCG
CCGGAGGAACGACTGGTGGTGGCTTTTGGAGACCGCATCTGTCCTGCAAA
TGACAAGACAGTGACTTCCTTTCTCAGGACGGCGACATCTTTCCTCAACG
ATAGAATTGCACACGGGGTGTAAATGTATGTGCTGCGTCCTTTAGGTGGC
TGGAATGGACTGTGCGCCTCAATTTTTGGGGTTATTAAGGAGGAGGTTGA
ATACAACACAAAATCCGCTCCCACACCACTTTACAGGATGGCCAAAGAGA
GCGACGACGACAAACCAGACAAGGGAAAGGATGAAGCGGGCCTGTGCGGG
CTGGTCTTGGCCGAGGTGGTCATGGAGATCATTGAGAAGGCCGACTTCTT
CCCTGCGCTTGGCCAGTGCAATGCTTCCAAAGGCATACAGGGCCTACAAC
ATCAGGTCCAAGCGCGCAAGCTCTCATCGTTGCGACTGGACGTTCTCGAC
AACTTGGTATCTCCCTTCCTCCTACTTGCGGCGGCCGAAAAGATGTATTA
TTCTGGCGCGGACCTGACGGAAAGCTGTGCGGGGCCACTGCCCATGTACG
AAGAGGTCCATTCAGACCTGGGCACGCTCCTGCAGCTTTTCCAACCACAT
GCCAAATCGGCTTTTGTACCTTTGCTACAAATTGCACAAATCGTTGTCGA
AATTCGGATATGGCTTTGTCGGTGGTACCTGCTTGACGACTCTTCTGCCG
GCCCCTTGTCCGCGGCCCCAATAGAGGGGCCGGAGGCACAAGCCGCCAGG
CAAGACCCACTGTCCACCTTGACAGCGCAGATGCAACGCTTACAAAAATG
TAAATCGCATTGGAAAGGGCACCTCACGGATCTACTTCCTTGGATGGAGG
TGGTGCTCGTGGAAGGCAAGACGGTCGATATATGTTTACGAGCGCTCGCA
TCATTGAACCGTCACCCTCCCGACCTTCTTTCCGTCACCGTCCAGCTGCT
CCGCATGCGCAAGGCAATCGGCCTGTGGGAGGACGAATCAGTTATACAAC
CTCCAGCTTCAGAGAGGGATGTCGTAATTAGGGCTCCGCGATACCAGCTT
TTGCGTCAGCTGTTCCAGCACCTCATCAATAAAATGCCTCTGCGCTTTCA
CGCTGTGGCTGATCAGGTCATGCCCCTGTCCAAGTATAATACCGAGCTGT
TGGGTCTGCCCTCATCCTCTTCATCTCTTTCTCCTCACCATAGCAGCAGT
GACAGTGGCAGCTCCAATCCCTATGTCGCTTTAATTGCACGCTTTCTGCT
CTCATACGGCCCCGCCGCCAAGGTCTGTGTCAGCATCTTTAAACAGACCA
GTGAAGGAGCGGCGGAAAAGGAGGTGGTCAACACCTCCACCAACAAAAAC
CACCGGGCACCGGAAGAGGGTCATGCCTACGACTTGCCTTGCGTAAGGGG
CTCACTGACAGCACCATCGCAGCGGCAGGATATCTTGGACCGTGGATTTG
TGCCAACCTTTTCCATGACTTCGGGTAAAGCTGCGGCGGCAAGCGGCAGC
AAGCAGCACAGCAGCGCGCGATACGTGACGGTATCGTCCTCATCTTCCGC
CTTGGCCTCCGAGCCCCCCTTAGGCCGCCTCTCATCTTCATCGTCATCAA
AAGTGCCTGGCATGGGAATCACGACGGTGGGTTCGGAGCTTAGTGGATCA
TTTACCTCCACCTCCTCATCTTCCTCGTCAGCACGTCGAGACCACGGCCC
ACCACCCTGGTTTTGGGCGCTGTGCCACCATAGCGGCTTGTGGTTGGCAG
TAGAAGGGCGATTGCCAGAGGGGGGAGCTCAGCGATTCTCCCTTTCGGGC
GCCAGGGGGGAAGGAGGGGGTAAAGGACAAGTTAGCGGACCCAGGGCGTC
ACCTTTGGAAGGAACGTTCATCCATCAAAGCGGCAAACACCACACCTTCA
CCTACTTTGTTGCGCATGTCTCGCCGGAGGAACGACTGGTGGTGGCTTTT
GGAGACCGCATCTGTCCTGCAAATGACAAGACAGTGACTTCCTTTCTCAG
GACGGCGACATCTTTCCTCAACGATAGAATTGCACACGGGGTGTAA back to top
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