jgi.p|Nanoce1779_2|585303, mRNA_3314 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585303
Unique NamemRNA_3314
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length619
Alignment locationscaffold_7:1179170..1179788 -

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Properties
Property NameValue
TranscriptId585389
TrackFilteredModels2
ProteinId585303
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:1179170..1179788 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585303gene_3314Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585303mRNA_3314-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3314CDS_3314Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3314 ID=mRNA_3314|Name=jgi.p|Nanoce1779_2|585303|organism=Nannochloropsis oceanica|type=mRNA|length=619bp
GCTGCTACTGCTACTGCTGTTGCTTCAACTGCTGTTGCTTCAACTGCTGC
TGCTTCATCTGCTGCTGCTCCTGCTGCCATGCCCTCTCGTATCTTTCTCT
GTATTTCGCTGCCAATCTTCTTTTTTTGCGAGTATGGATGGGGCAACATG
CTGGGCAGGATCCTTACACCTTGTGTTCCGTCGATTGTTTTTTCCTTCTT
ACTCCTGTTGAACTACCTCGCTCCTGCATGTATTCAAACGTGCCTCTGCT
GTTGCTGCCCCTCCTCCTCCTCTTCTTCTTCTTCCTCCTCCTCCTCCTTA
CTCGTTCATTTAATCGTCGTTTGACTCTGCACCGCACCCTTTTCCTTCCT
TCCTTCGATCAATTCTTCCCTCCTTCCCTCGGCAAAAACCGCAGGCGCGT
CTGCCCTCTCTGTCCTCCCGTCGCAACGGGCGACCAGTCTAATCCCACCT
TTGCTCGCTTTCGATTCGTCTCGACAGGCAAAGGCCCGACAGGAGAAGGT
GGGAAGGGGGATGAGGAGGAAGAGGAGGAGGAAGAGGCGGGTGAAAAAGA
GGAGGAGAAAGAGGAGGAGGAGGGAGAAGACGAGGGAAAGTTTGCATGGG
CGACACCACCTTGCGGTTC
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protein sequence of jgi.p|Nanoce1779_2|585303

>mRNA_3314-protein ID=mRNA_3314-protein|Name=jgi.p|Nanoce1779_2|585303|organism=Nannochloropsis oceanica|type=polypeptide|length=82bp
MPSRIFLCISLPIFFFCEYGWGNMLGRILTPCVPSIVFSFLLLLNYLAPA
CIQTCLCCCCPSSSSSSSSSSSSLLVHLIVV*
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mRNA from alignment at scaffold_7:1179170..1179788-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3314 ID=mRNA_3314|Name=jgi.p|Nanoce1779_2|585303|organism=Nannochloropsis oceanica|type=mRNA|length=619bp|location=Sequence derived from alignment at scaffold_7:1179170..1179788- (Nannochloropsis oceanica)
GCTGCTACTGCTACTGCTGTTGCTTCAACTGCTGTTGCTTCAACTGCTGC
TGCTTCATCTGCTGCTGCTCCTGCTGCCATGCCCTCTCGTATCTTTCTCT
GTATTTCGCTGCCAATCTTCTTTTTTTGCGAGTATGGATGGGGCAACATG
CTGGGCAGGATCCTTACACCTTGTGTTCCGTCGATTGTTTTTTCCTTCTT
ACTCCTGTTGAACTACCTCGCTCCTGCATGTATTCAAACGTGCCTCTGCT
GTTGCTGCCCCTCCTCCTCCTCTTCTTCTTCTTCCTCCTCCTCCTCCTTA
CTCGTTCATTTAATCGTCGTTTGACTCTGCACCGCACCCTTTTCCTTCCT
TCCTTCGATCAATTCTTCCCTCCTTCCCTCGGCAAAAACCGCAGGCGCGT
CTGCCCTCTCTGTCCTCCCGTCGCAACGGGCGACCAGTCTAATCCCACCT
TTGCTCGCTTTCGATTCGTCTCGACAGGCAAAGGCCCGACAGGAGAAGGT
GGGAAGGGGGATGAGGAGGAAGAGGAGGAGGAAGAGGCGGGTGAAAAAGA
GGAGGAGAAAGAGGAGGAGGAGGGAGAAGACGAGGGAAAGTTTGCATGGG
CGACACCACCTTGCGGTTC
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Coding sequence (CDS) from alignment at scaffold_7:1179170..1179788-

>mRNA_3314 ID=mRNA_3314|Name=jgi.p|Nanoce1779_2|585303|organism=Nannochloropsis oceanica|type=CDS|length=246bp|location=Sequence derived from alignment at scaffold_7:1179170..1179788- (Nannochloropsis oceanica)
ATGCCCTCTCGTATCTTTCTCTGTATTTCGCTGCCAATCTTCTTTTTTTG
CGAGTATGGATGGGGCAACATGCTGGGCAGGATCCTTACACCTTGTGTTC
CGTCGATTGTTTTTTCCTTCTTACTCCTGTTGAACTACCTCGCTCCTGCA
TGTATTCAAACGTGCCTCTGCTGTTGCTGCCCCTCCTCCTCCTCTTCTTC
TTCTTCCTCCTCCTCCTCCTTACTCGTTCATTTAATCGTCGTTTGA
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Synonyms
Publications