jgi.p|Nanoce1779_2|547907, mRNA_11037 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|547907
Unique NamemRNA_11037
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1795
Alignment locationscaffold_70:54887..56681 -

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Properties
Property NameValue
TranscriptId547993
TrackFilteredModels2
ProteinId547907
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_70supercontigscaffold_70:54887..56681 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|547907gene_11037Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|547907mRNA_11037-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11037CDS_11037Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11037 ID=mRNA_11037|Name=jgi.p|Nanoce1779_2|547907|organism=Nannochloropsis oceanica|type=mRNA|length=1795bp
AGAAAAAGAAAGCGGCGTCGTGCAAGCTACATTCCCAGAAGAGTCAAGTG
CTTCGCAACAGAACAAGGCAATTTCATCCTATGAACGGCGTTTATCCGTT
TTTACCCCTCTATGAGTATGCTAAATACCTCTGCAGCTAACCTCCCCATC
CACGAAGTAATCGATGGACAAGTTGCGTCAAAACCAAAAAGAAGGAATGG
CAGTGCCCATATCTGGCCCTCGCGTCAAGGGAGAGCCGATGAAGGCCGTG
ACCTGGCAAGGTGCGCGCGATATTCGAGTTGTAGAGGTGGACCGCCCGGC
CTTGGCGCATCCGCAGGACGTCATCCTCCGCGTCACTTCCACGGCGATTT
GCGGCTCCGACCTGCATTTGTATACTGGCAACTTTCCCAAGAGCTCCATG
GCCAAGGGTGATATTTTGGGGCATGAATTCATGGGTATCGTGCACGAGAT
TGGCGAGGATGTGAAGGGGTACAAACCAGGTGATCGCGTGGTTTGCTCCT
TTGACATTGCCTGTGGACACTGTCACTCGTGCCACCACCAACTCTTCTCC
CTTTGCGACATGAGTAACGACAGCACCGCTCAAGAGGCTTTGTATGGAGA
CAAAAGTGGAGGTTACTTTGGGTACTCGCACCTGACGGGCGGCTGGGCAG
GAGGCCAAGCCGATTACGTGCGCGTTCCCTTTGCGGAGCAGAACCTTTTA
AAAGTGCCTGAGAATCACGCTCGACATACAGACTTGGACGTGCTACTTCT
GTCAGACGTGCTCGGTACAGCCTGGCATGCTTGTGAGATGGGTGAAGTGA
AGGAGGGGGATACGGTCGCGATCTGGGGCGCAGGGCCAGTGGGGATGCTG
GCAGCTCAGTGCGCTCAGCACCGGGGCGCGGCCAAGGTGATTTTGATCGA
TCAAGAGCTGTACCGCCTCGAATTTGCTGAGCATCGCCTGAACCCTCGTA
CGCTTGTCACGCTGAATGGCCGTCAGCTCAAGCAACAAAATTGTGTGGTG
GCCAAGGCGGTACGCGAGATTCTTCCGCACGGGCCGGATGTGGCTATTGA
ATGCGTGGGATTTCACTACGCGTCAACGTTCCTGCACCGGGCGGAGATGA
CCCTCGGTCTTGAAACGGACCCCGCTGACATGATGAACGAGATCTTTACC
ACTGTCCGCAAGGGTGGACGGGTCAGTGTGGTGGGGGTGTATGTAGGCCA
CGTGAATCACTTTAATTTTGGCTGTTTCATGGAAAAAGGCCTGACGATGA
AGGCAGGTCAAACCCCCGTGCAGCGCTACTGGAAAATGCTCTTGGAAAAA
GTGGAGAAGAAGGAGTTGGACCCGCGTGTCATAATCACTCACGAGCTGCC
GCTCGAAGAGGCGGCCAAGGCTTACCAAATTTTTAACAACAAAGAGAACG
GCTGCGTCAAGGTGGTGCTGCATACCAAATTTTATAAAGGCCAGTACCTT
GAGAAAGAAAAAGGTGTTAAGGACGAAGAGGTAGCCGGGGCAGGAGGGTC
ACACTAAAGGGTAAGGACGGATGAGAAGATAGACGGGGACCAGGTAGTTT
TGTAAGACAGTGACGTAAGACATTGATAGCCGGAAATGGGATAAATACAT
CGGCAATAAAGGGGGCGAGATTAGAGTAGTTGGACTCACAACGGCGTGCA
GGGAGAAAGGCAGGTGGATTGATTTGGATAGAGGGAAAGGTAAGAGAAGT
ATTTGAGTCCTTCAGACTCTACTTGAAAAAAAAAGCTGGACAATACAGCA
ATGGAGTAAAGACGAGAAATAATCAGCAATGGAGTAAAGACCGGG
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protein sequence of jgi.p|Nanoce1779_2|547907

>mRNA_11037-protein ID=mRNA_11037-protein|Name=jgi.p|Nanoce1779_2|547907|organism=Nannochloropsis oceanica|type=polypeptide|length=448bp
MDKLRQNQKEGMAVPISGPRVKGEPMKAVTWQGARDIRVVEVDRPALAHP
QDVILRVTSTAICGSDLHLYTGNFPKSSMAKGDILGHEFMGIVHEIGEDV
KGYKPGDRVVCSFDIACGHCHSCHHQLFSLCDMSNDSTAQEALYGDKSGG
YFGYSHLTGGWAGGQADYVRVPFAEQNLLKVPENHARHTDLDVLLLSDVL
GTAWHACEMGEVKEGDTVAIWGAGPVGMLAAQCAQHRGAAKVILIDQELY
RLEFAEHRLNPRTLVTLNGRQLKQQNCVVAKAVREILPHGPDVAIECVGF
HYASTFLHRAEMTLGLETDPADMMNEIFTTVRKGGRVSVVGVYVGHVNHF
NFGCFMEKGLTMKAGQTPVQRYWKMLLEKVEKKELDPRVIITHELPLEEA
AKAYQIFNNKENGCVKVVLHTKFYKGQYLEKEKGVKDEEVAGAGGSH*
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mRNA from alignment at scaffold_70:54887..56681-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11037 ID=mRNA_11037|Name=jgi.p|Nanoce1779_2|547907|organism=Nannochloropsis oceanica|type=mRNA|length=1795bp|location=Sequence derived from alignment at scaffold_70:54887..56681- (Nannochloropsis oceanica)
AGAAAAAGAAAGCGGCGTCGTGCAAGCTACATTCCCAGAAGAGTCAAGTG
CTTCGCAACAGAACAAGGCAATTTCATCCTATGAACGGCGTTTATCCGTT
TTTACCCCTCTATGAGTATGCTAAATACCTCTGCAGCTAACCTCCCCATC
CACGAAGTAATCGATGGACAAGTTGCGTCAAAACCAAAAAGAAGGAATGG
CAGTGCCCATATCTGGCCCTCGCGTCAAGGGAGAGCCGATGAAGGCCGTG
ACCTGGCAAGGTGCGCGCGATATTCGAGTTGTAGAGGTGGACCGCCCGGC
CTTGGCGCATCCGCAGGACGTCATCCTCCGCGTCACTTCCACGGCGATTT
GCGGCTCCGACCTGCATTTGTATACTGGCAACTTTCCCAAGAGCTCCATG
GCCAAGGGTGATATTTTGGGGCATGAATTCATGGGTATCGTGCACGAGAT
TGGCGAGGATGTGAAGGGGTACAAACCAGGTGATCGCGTGGTTTGCTCCT
TTGACATTGCCTGTGGACACTGTCACTCGTGCCACCACCAACTCTTCTCC
CTTTGCGACATGAGTAACGACAGCACCGCTCAAGAGGCTTTGTATGGAGA
CAAAAGTGGAGGTTACTTTGGGTACTCGCACCTGACGGGCGGCTGGGCAG
GAGGCCAAGCCGATTACGTGCGCGTTCCCTTTGCGGAGCAGAACCTTTTA
AAAGTGCCTGAGAATCACGCTCGACATACAGACTTGGACGTGCTACTTCT
GTCAGACGTGCTCGGTACAGCCTGGCATGCTTGTGAGATGGGTGAAGTGA
AGGAGGGGGATACGGTCGCGATCTGGGGCGCAGGGCCAGTGGGGATGCTG
GCAGCTCAGTGCGCTCAGCACCGGGGCGCGGCCAAGGTGATTTTGATCGA
TCAAGAGCTGTACCGCCTCGAATTTGCTGAGCATCGCCTGAACCCTCGTA
CGCTTGTCACGCTGAATGGCCGTCAGCTCAAGCAACAAAATTGTGTGGTG
GCCAAGGCGGTACGCGAGATTCTTCCGCACGGGCCGGATGTGGCTATTGA
ATGCGTGGGATTTCACTACGCGTCAACGTTCCTGCACCGGGCGGAGATGA
CCCTCGGTCTTGAAACGGACCCCGCTGACATGATGAACGAGATCTTTACC
ACTGTCCGCAAGGGTGGACGGGTCAGTGTGGTGGGGGTGTATGTAGGCCA
CGTGAATCACTTTAATTTTGGCTGTTTCATGGAAAAAGGCCTGACGATGA
AGGCAGGTCAAACCCCCGTGCAGCGCTACTGGAAAATGCTCTTGGAAAAA
GTGGAGAAGAAGGAGTTGGACCCGCGTGTCATAATCACTCACGAGCTGCC
GCTCGAAGAGGCGGCCAAGGCTTACCAAATTTTTAACAACAAAGAGAACG
GCTGCGTCAAGGTGGTGCTGCATACCAAATTTTATAAAGGCCAGTACCTT
GAGAAAGAAAAAGGTGTTAAGGACGAAGAGGTAGCCGGGGCAGGAGGGTC
ACACTAAAGGGTAAGGACGGATGAGAAGATAGACGGGGACCAGGTAGTTT
TGTAAGACAGTGACGTAAGACATTGATAGCCGGAAATGGGATAAATACAT
CGGCAATAAAGGGGGCGAGATTAGAGTAGTTGGACTCACAACGGCGTGCA
GGGAGAAAGGCAGGTGGATTGATTTGGATAGAGGGAAAGGTAAGAGAAGT
ATTTGAGTCCTTCAGACTCTACTTGAAAAAAAAAGCTGGACAATACAGCA
ATGGAGTAAAGACGAGAAATAATCAGCAATGGAGTAAAGACCGGG
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Coding sequence (CDS) from alignment at scaffold_70:54887..56681-

>mRNA_11037 ID=mRNA_11037|Name=jgi.p|Nanoce1779_2|547907|organism=Nannochloropsis oceanica|type=CDS|length=1344bp|location=Sequence derived from alignment at scaffold_70:54887..56681- (Nannochloropsis oceanica)
ATGGACAAGTTGCGTCAAAACCAAAAAGAAGGAATGGCAGTGCCCATATC
TGGCCCTCGCGTCAAGGGAGAGCCGATGAAGGCCGTGACCTGGCAAGGTG
CGCGCGATATTCGAGTTGTAGAGGTGGACCGCCCGGCCTTGGCGCATCCG
CAGGACGTCATCCTCCGCGTCACTTCCACGGCGATTTGCGGCTCCGACCT
GCATTTGTATACTGGCAACTTTCCCAAGAGCTCCATGGCCAAGGGTGATA
TTTTGGGGCATGAATTCATGGGTATCGTGCACGAGATTGGCGAGGATGTG
AAGGGGTACAAACCAGGTGATCGCGTGGTTTGCTCCTTTGACATTGCCTG
TGGACACTGTCACTCGTGCCACCACCAACTCTTCTCCCTTTGCGACATGA
GTAACGACAGCACCGCTCAAGAGGCTTTGTATGGAGACAAAAGTGGAGGT
TACTTTGGGTACTCGCACCTGACGGGCGGCTGGGCAGGAGGCCAAGCCGA
TTACGTGCGCGTTCCCTTTGCGGAGCAGAACCTTTTAAAAGTGCCTGAGA
ATCACGCTCGACATACAGACTTGGACGTGCTACTTCTGTCAGACGTGCTC
GGTACAGCCTGGCATGCTTGTGAGATGGGTGAAGTGAAGGAGGGGGATAC
GGTCGCGATCTGGGGCGCAGGGCCAGTGGGGATGCTGGCAGCTCAGTGCG
CTCAGCACCGGGGCGCGGCCAAGGTGATTTTGATCGATCAAGAGCTGTAC
CGCCTCGAATTTGCTGAGCATCGCCTGAACCCTCGTACGCTTGTCACGCT
GAATGGCCGTCAGCTCAAGCAACAAAATTGTGTGGTGGCCAAGGCGGTAC
GCGAGATTCTTCCGCACGGGCCGGATGTGGCTATTGAATGCGTGGGATTT
CACTACGCGTCAACGTTCCTGCACCGGGCGGAGATGACCCTCGGTCTTGA
AACGGACCCCGCTGACATGATGAACGAGATCTTTACCACTGTCCGCAAGG
GTGGACGGGTCAGTGTGGTGGGGGTGTATGTAGGCCACGTGAATCACTTT
AATTTTGGCTGTTTCATGGAAAAAGGCCTGACGATGAAGGCAGGTCAAAC
CCCCGTGCAGCGCTACTGGAAAATGCTCTTGGAAAAAGTGGAGAAGAAGG
AGTTGGACCCGCGTGTCATAATCACTCACGAGCTGCCGCTCGAAGAGGCG
GCCAAGGCTTACCAAATTTTTAACAACAAAGAGAACGGCTGCGTCAAGGT
GGTGCTGCATACCAAATTTTATAAAGGCCAGTACCTTGAGAAAGAAAAAG
GTGTTAAGGACGAAGAGGTAGCCGGGGCAGGAGGGTCACACTAA
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Synonyms
Publications