jgi.p|Nanoce1779_2|570091, mRNA_10917 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|570091
Unique NamemRNA_10917
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length357
Alignment locationscaffold_71:57231..57587 -

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Properties
Property NameValue
TranscriptId570177
TrackFilteredModels2
ProteinId570091
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_71supercontigscaffold_71:57231..57587 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|570091gene_10917Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10917CDS_10917Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|570091mRNA_10917-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10917 ID=mRNA_10917|Name=jgi.p|Nanoce1779_2|570091|organism=Nannochloropsis oceanica|type=mRNA|length=357bp
ATGGAGCCCACCGCGATAGAAGCAGCAATATCAGCGAGGGCCACCCAATC
GTCGGTGGTGCTGGCGCCTGTGTCTTTTCGAAGGGAAACGCGAAGCAGCT
CCTTGATAAAATCACTCTTGACGTCGAACAGGCCAGCGGGCACGGAGACC
AGGGAAGGAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGTCATGATGATGGTGGAGGAGG
GGGGGTCATGGGGTGGGGAGGAGTGTTGGCAAGAGGAGGCGGAGGAAAAG
GGGGCTGGCTTTCTCTCTATGGATGGGGTTGCGGCAAGAGAGGAAGCGGT
GGAATGA
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protein sequence of jgi.p|Nanoce1779_2|570091

>mRNA_10917-protein ID=mRNA_10917-protein|Name=jgi.p|Nanoce1779_2|570091|organism=Nannochloropsis oceanica|type=polypeptide|length=119bp
MEPTAIEAAISARATQSSVVLAPVSFRRETRSSSLIKSLLTSNRPAGTET
REGEEEEEEEEEEEEEEEEEEEEEEEVMMMVEEGGSWGGEECWQEEAEEK
GAGFLSMDGVAAREEAVE*
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mRNA from alignment at scaffold_71:57231..57587-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10917 ID=mRNA_10917|Name=jgi.p|Nanoce1779_2|570091|organism=Nannochloropsis oceanica|type=mRNA|length=357bp|location=Sequence derived from alignment at scaffold_71:57231..57587- (Nannochloropsis oceanica)
ATGGAGCCCACCGCGATAGAAGCAGCAATATCAGCGAGGGCCACCCAATC
GTCGGTGGTGCTGGCGCCTGTGTCTTTTCGAAGGGAAACGCGAAGCAGCT
CCTTGATAAAATCACTCTTGACGTCGAACAGGCCAGCGGGCACGGAGACC
AGGGAAGGAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGTCATGATGATGGTGGAGGAGG
GGGGGTCATGGGGTGGGGAGGAGTGTTGGCAAGAGGAGGCGGAGGAAAAG
GGGGCTGGCTTTCTCTCTATGGATGGGGTTGCGGCAAGAGAGGAAGCGGT
GGAATGA
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Coding sequence (CDS) from alignment at scaffold_71:57231..57587-

>mRNA_10917 ID=mRNA_10917|Name=jgi.p|Nanoce1779_2|570091|organism=Nannochloropsis oceanica|type=CDS|length=357bp|location=Sequence derived from alignment at scaffold_71:57231..57587- (Nannochloropsis oceanica)
ATGGAGCCCACCGCGATAGAAGCAGCAATATCAGCGAGGGCCACCCAATC
GTCGGTGGTGCTGGCGCCTGTGTCTTTTCGAAGGGAAACGCGAAGCAGCT
CCTTGATAAAATCACTCTTGACGTCGAACAGGCCAGCGGGCACGGAGACC
AGGGAAGGAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGTCATGATGATGGTGGAGGAGG
GGGGGTCATGGGGTGGGGAGGAGTGTTGGCAAGAGGAGGCGGAGGAAAAG
GGGGCTGGCTTTCTCTCTATGGATGGGGTTGCGGCAAGAGAGGAAGCGGT
GGAATGA
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Synonyms
Publications