jgi.p|Nanoce1779_2|585985, mRNA_3968 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585985
Unique NamemRNA_3968
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1179
Alignment locationscaffold_8:522348..523526 -

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Properties
Property NameValue
TranscriptId586071
TrackFilteredModels2
ProteinId585985
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:522348..523526 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585985gene_3968Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585985mRNA_3968-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3968CDS_3968Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3968 ID=mRNA_3968|Name=jgi.p|Nanoce1779_2|585985|organism=Nannochloropsis oceanica|type=mRNA|length=1179bp
CAGCAACAACAGGCTGTGATGGAGGAGGAAGGGGGGATCGCCAGCCAAGT
GTTACAGTCAAACCCTATTTTAGAGAGTTTTGGGAATGCCCGCACAATTC
GTAACGAAAACTCTTCACGCTTCGGTAAGTTCATCGAACTACATTTCGCT
GATGCTGTTGGTAGTGGTGTTGGCGCGGCAGGGAAAGGGATATTGATGGG
TGCTAAAATTTCAACATACCTGTTGAAAAAAGTACGGATTGTTAGTCAGG
CGGAGGGGGAGAGAAATTATCACATTTTCTACCAGCTGCTGAAGGGTGCT
GATGCCAAGGAGAGGGTAGCGTTGGGGCTGGGAGAATTTGTGAAGGAAGA
GGGAGGGAAGAAGGAAAGGGAGGAAGTTCAGGAGGTCAAGTTTCATTATT
TGAGTCACAGTGGGTGTATGTCGCGACAGGATGGGACAGACGATGCGGAC
GACTACCAGCGCACGAGGAAGGCCATGACTATCATGGGGTTTGGAACTGA
AGAGCAAGCACGTGTGATGAAGTTAGTGGCGGCCATCTTACACCTGGGCA
ATTTGCGATTTGCGATGCGCAAGCAAGGAGGAAGCAGCGGCAATAGCTGC
AGTGATGCCGATTTCATCCCCGAGGCAGCGACTGTCGCAGCAGCAGCAAG
CGTGGCTACGGCCGAACGCATCGCGGATTTGTTGGAGGTGGACCCACTGG
CGTTCAAGCAGTCTTTGACTGATCGTACAATTCAAGCAGGACGGGAGGCA
GTGAATGTGCGCCTATCGCCGGCGCAAGCGGAGGGAGCACGAGAAGCATT
AGCCAAGGCCATATAGAAATTCGTTCTTGTGGATTGTCAACCGGATTAAC
GCTGCGATTCACACTCACGGGCAGCAAAAGCAGAAGGGGGATCAAGGAGC
CACCGGTACCTCATTGGCCTCTACCCCTTTCTCCCTTCCTCCTTCTTCTT
TGTCCTCGAGGAGTTTTATCTGCATCTTAGATATTTTTGGTTTCGAGATA
ATGCAGAAAAACTCGTTCGAGCAACTTTGTATCAACGCTGCTAATGAAGA
GTTGCAGCAGCAGTCCAATCAGTTTGTCTTTCGGCTGGAGCAGGAGGAGT
ATGAGCGAGAGGATATCTCCTGGAACTTTGTATCTTTTTCTGATAACCAA
GAATGTCTGGATCTGATCGAGAAGAGGGG
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protein sequence of jgi.p|Nanoce1779_2|585985

>mRNA_3968-protein ID=mRNA_3968-protein|Name=jgi.p|Nanoce1779_2|585985|organism=Nannochloropsis oceanica|type=polypeptide|length=266bp
MEEEGGIASQVLQSNPILESFGNARTIRNENSSRFGKFIELHFADAVGSG
VGAAGKGILMGAKISTYLLKKVRIVSQAEGERNYHIFYQLLKGADAKERV
ALGLGEFVKEEGGKKEREEVQEVKFHYLSHSGCMSRQDGTDDADDYQRTR
KAMTIMGFGTEEQARVMKLVAAILHLGNLRFAMRKQGGSSGNSCSDADFI
PEAATVAAAASVATAERIADLLEVDPLAFKQSLTDRTIQAGREAVNVRLS
PAQAEGAREALAKAI*
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mRNA from alignment at scaffold_8:522348..523526-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3968 ID=mRNA_3968|Name=jgi.p|Nanoce1779_2|585985|organism=Nannochloropsis oceanica|type=mRNA|length=1179bp|location=Sequence derived from alignment at scaffold_8:522348..523526- (Nannochloropsis oceanica)
CAGCAACAACAGGCTGTGATGGAGGAGGAAGGGGGGATCGCCAGCCAAGT
GTTACAGTCAAACCCTATTTTAGAGAGTTTTGGGAATGCCCGCACAATTC
GTAACGAAAACTCTTCACGCTTCGGTAAGTTCATCGAACTACATTTCGCT
GATGCTGTTGGTAGTGGTGTTGGCGCGGCAGGGAAAGGGATATTGATGGG
TGCTAAAATTTCAACATACCTGTTGAAAAAAGTACGGATTGTTAGTCAGG
CGGAGGGGGAGAGAAATTATCACATTTTCTACCAGCTGCTGAAGGGTGCT
GATGCCAAGGAGAGGGTAGCGTTGGGGCTGGGAGAATTTGTGAAGGAAGA
GGGAGGGAAGAAGGAAAGGGAGGAAGTTCAGGAGGTCAAGTTTCATTATT
TGAGTCACAGTGGGTGTATGTCGCGACAGGATGGGACAGACGATGCGGAC
GACTACCAGCGCACGAGGAAGGCCATGACTATCATGGGGTTTGGAACTGA
AGAGCAAGCACGTGTGATGAAGTTAGTGGCGGCCATCTTACACCTGGGCA
ATTTGCGATTTGCGATGCGCAAGCAAGGAGGAAGCAGCGGCAATAGCTGC
AGTGATGCCGATTTCATCCCCGAGGCAGCGACTGTCGCAGCAGCAGCAAG
CGTGGCTACGGCCGAACGCATCGCGGATTTGTTGGAGGTGGACCCACTGG
CGTTCAAGCAGTCTTTGACTGATCGTACAATTCAAGCAGGACGGGAGGCA
GTGAATGTGCGCCTATCGCCGGCGCAAGCGGAGGGAGCACGAGAAGCATT
AGCCAAGGCCATATAGAAATTCGTTCTTGTGGATTGTCAACCGGATTAAC
GCTGCGATTCACACTCACGGGCAGCAAAAGCAGAAGGGGGATCAAGGAGC
CACCGGTACCTCATTGGCCTCTACCCCTTTCTCCCTTCCTCCTTCTTCTT
TGTCCTCGAGGAGTTTTATCTGCATCTTAGATATTTTTGGTTTCGAGATA
ATGCAGAAAAACTCGTTCGAGCAACTTTGTATCAACGCTGCTAATGAAGA
GTTGCAGCAGCAGTCCAATCAGTTTGTCTTTCGGCTGGAGCAGGAGGAGT
ATGAGCGAGAGGATATCTCCTGGAACTTTGTATCTTTTTCTGATAACCAA
GAATGTCTGGATCTGATCGAGAAGAGGGG
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Coding sequence (CDS) from alignment at scaffold_8:522348..523526-

>mRNA_3968 ID=mRNA_3968|Name=jgi.p|Nanoce1779_2|585985|organism=Nannochloropsis oceanica|type=CDS|length=798bp|location=Sequence derived from alignment at scaffold_8:522348..523526- (Nannochloropsis oceanica)
ATGGAGGAGGAAGGGGGGATCGCCAGCCAAGTGTTACAGTCAAACCCTAT
TTTAGAGAGTTTTGGGAATGCCCGCACAATTCGTAACGAAAACTCTTCAC
GCTTCGGTAAGTTCATCGAACTACATTTCGCTGATGCTGTTGGTAGTGGT
GTTGGCGCGGCAGGGAAAGGGATATTGATGGGTGCTAAAATTTCAACATA
CCTGTTGAAAAAAGTACGGATTGTTAGTCAGGCGGAGGGGGAGAGAAATT
ATCACATTTTCTACCAGCTGCTGAAGGGTGCTGATGCCAAGGAGAGGGTA
GCGTTGGGGCTGGGAGAATTTGTGAAGGAAGAGGGAGGGAAGAAGGAAAG
GGAGGAAGTTCAGGAGGTCAAGTTTCATTATTTGAGTCACAGTGGGTGTA
TGTCGCGACAGGATGGGACAGACGATGCGGACGACTACCAGCGCACGAGG
AAGGCCATGACTATCATGGGGTTTGGAACTGAAGAGCAAGCACGTGTGAT
GAAGTTAGTGGCGGCCATCTTACACCTGGGCAATTTGCGATTTGCGATGC
GCAAGCAAGGAGGAAGCAGCGGCAATAGCTGCAGTGATGCCGATTTCATC
CCCGAGGCAGCGACTGTCGCAGCAGCAGCAAGCGTGGCTACGGCCGAACG
CATCGCGGATTTGTTGGAGGTGGACCCACTGGCGTTCAAGCAGTCTTTGA
CTGATCGTACAATTCAAGCAGGACGGGAGGCAGTGAATGTGCGCCTATCG
CCGGCGCAAGCGGAGGGAGCACGAGAAGCATTAGCCAAGGCCATATAG
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Synonyms
Publications