jgi.p|Nanoce1779_2|629601, mRNA_3890 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|629601
Unique NamemRNA_3890
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1379
Alignment locationscaffold_8:317261..318913 +

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Properties
Property NameValue
TranscriptId629687
TrackFilteredModels2
ProteinId629601
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:317261..318913 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|629601gene_3890Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|629601mRNA_3890-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3890CDS_3890Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3890 ID=mRNA_3890|Name=jgi.p|Nanoce1779_2|629601|organism=Nannochloropsis oceanica|type=mRNA|length=1379bp
ACAGGTGCACAAAGGAAGCAACGCTGCGGTAAGCCGTCTCTACCTTGGTC
CGTGTCCTTACGTGACCGCAGCATACGAATATTCGGTCCTCACCGCACGG
CATATCATCGTCTGCCTACACGACACTTACACGTACGTCCTTGCCGTGCG
GTGTGATGCCTGACATCAGCACCATCATCTAGAGAAGTATCTACAGCACG
GTAGCAAATGGGTGGCGGCGGCTTTCTATTCCGCCTCGCGCTATGGGGTC
TCACCTTCTTTCTACGCTGGCTACTGGTCCCTCTGTGCATTGCCATCGTC
GTCGCCCTCAATCCGCCAACGCTTGGCGAGCTCATCTCCAACCTCGTCAT
CTTCATCTGCGGCAAATTGCACGGCTTCAAAAGCAAGCAGGAAGTCAGGC
TCTTCCGTGTACAGGCCATCCACTTGTGGGGATGGAGAGTGGAGGGGTTG
GAAGCCACGATCCTTGAGACGAAGGGGAATGGAGCTGTGGAGGCCGTTGT
GTTGTTGGTGCGGTGCATGGAGGTCCGTTCGACGATCAAGGCAGCCCTCT
ACTCCTTCTTCCAAACCAAGCCCTTCGAGATCCGCTTCTCGGGAATCCAC
GTCAGGAAAATACCCTGGTCCTCACCCCCTCCCTCCTCCTCCTCCTCTTC
CTTTTCTTGTTCGTCCGCCGACGCAGTTATTATGCCGCATCCCCCCCCCC
CGCTTAAACCTCTCAGGAGACTCTCCTCACCAGTATCACCTCCAACCTCA
GCAACAACAGCCGTAATAGCAGTAACGGCAGTAAAAAAAGCCACAGCAGC
CACGGAAATCAATAATAAGGAGAAAGGAGGTGTATTTACACCCATCACCC
AAAGCCCCAAGACCTGGAATCGGGTCGTCTGGCTCTGCAAGCTCGCCAGG
CTCACTGTCGAAGACGTCTCCCTCTCCTCCACCGTCGCCGTTTCCACCAC
CCCTCCCTCCACCCCTGCCTCCGCCACCTCCCCATGCGTGCAACACGTTT
GCACCAGCGCGGGTTTTGCGTTCTTCTCCCTGGCTGCTACCCACGCCGTC
CATCCCCGACACGTCCTGGGCGTCGACCTTCACCTCCAAACCCTCTGGGT
TCATGCTTCCACTACCATCCTTCCTCCCAGCACCAGCACCAGCATCATTA
GCAGCATTCGTAGCAACAGCAATTACAACAACACTAGCAAAGGAGGGTAT
TTTTTCAAAGCCAATCTCGATGGAATCCGCACAGGCCTGGTGGTCGAGCC
TCACGAAGACCGTCCTATCTCCTCCCACCTCGTCTTTGATGGCACCCCTG
TTATCCACCTCGACCCTTCCTCCCTCCCTCCCTCCTCTCCCATATCACCA
TCCACGGGCGTTCCTGCCCGCCCTCCCTC
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protein sequence of jgi.p|Nanoce1779_2|629601

>mRNA_3890-protein ID=mRNA_3890-protein|Name=jgi.p|Nanoce1779_2|629601|organism=Nannochloropsis oceanica|type=polypeptide|length=390bp
MGGGGFLFRLALWGLTFFLRWLLVPLCIAIVVALNPPTLGELISNLVIFI
CGKLHGFKSKQEVRLFRVQAIHLWGWRVEGLEATILETKGNGAVEAVVLL
VRCMEVRSTIKAALYSFFQTKPFEIRFSGIHVRKIPWSSPPPSSSSSSFS
CSSADAVIMPHPPPPLKPLRRLSSPVSPPTSATTAVIAVTAVKKATAATE
INNKEKGGVFTPITQSPKTWNRVVWLCKLARLTVEDVSLSSTVAVSTTPP
STPASATSPCVQHVCTSAGFAFFSLAATHAVHPRHVLGVDLHLQTLWVHA
STTILPPSTSTSIISSIRSNSNYNNTSKGGYFFKANLDGIRTGLVVEPHE
DRPISSHLVFDGTPVIHLDPSSLPPSSPISPSTGVPARPP
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mRNA from alignment at scaffold_8:317261..318913+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3890 ID=mRNA_3890|Name=jgi.p|Nanoce1779_2|629601|organism=Nannochloropsis oceanica|type=mRNA|length=1653bp|location=Sequence derived from alignment at scaffold_8:317261..318913+ (Nannochloropsis oceanica)
ACAGGTGCACAAAGGAAGCAACGCTGCGGTAAGCCGTCTCTACCTTGGTC
CGTGTCCTTACGTGACCGCAGCATACGAATATTCGGTCCTCACCGCACGG
CATATCATCGTCTGCCTACACGACACTTACACGTACGTCCTTGCCGTGCG
GTGTGATGCCTGACATCAGCACCATCATCTAGAGAAGTATCTACAGCACG
GTAGCAAATGGGTGGCGGCGGCTTTCTATTCCGCCTCGCGCTATGGGGTC
TCACCTTCTTTCTACGCTGGCTACTGGTCCCTCTGTGCATTGCCATCGTC
GTCGCCCTCAATCCGCCAACGCTTGGCGAGCTCATCTCCAACCTCGTCAT
CTTCATCTGCGGCAAATTGCACGGCTTCAAAAGCAAGCAGGAAGTCAGGC
TCTTCCGTGTACAGGCCATCCACTTGTGGGGATGGAGAGTGGAGGGGTTG
GAAGCCACGATCCTTGAGACGAAGGGGAATGGAGCTGTGGAGGCCGTTGT
GTTGTTGGTGCGGTGCATGGAGGTCCGTTCGACGATCAAGGTATGACACT
TTGGAAAAGGATAAGTAGCAAAATGCCGAATAAAGAATGCGGAAAAGGAG
AAATGGACGGGGGAAGAAAGAAGAGGGTGTGTAAAATGACCCAGAGTCTC
TAACTCTCCTTTCCTCTTGTCAATCTTGAATATAGGCCCTCCACCCTTCG
CACGAAACCAAAACATACCTACTCTCTTCAACTTTGCAGCACAAAGTGTG
ACCTCCGTTCTCCATCCTTCCGTTCCCTCCTTCCCTCCTCCCCCCTCCCT
TTCCCCGACAATAGGCAGCCCTCTACTCCTTCTTCCAAACCAAGCCCTTC
GAGATCCGCTTCTCGGGAATCCACGTCAGGAAAATACCCTGGTCCTCACC
CCCTCCCTCCTCCTCCTCCTCTTCCTTTTCTTGTTCGTCCGCCGACGCAG
TTATTATGCCGCATCCCCCCCCCCCGCTTAAACCTCTCAGGAGACTCTCC
TCACCAGTATCACCTCCAACCTCAGCAACAACAGCCGTAATAGCAGTAAC
GGCAGTAAAAAAAGCCACAGCAGCCACGGAAATCAATAATAAGGAGAAAG
GAGGTGTATTTACACCCATCACCCAAAGCCCCAAGACCTGGAATCGGGTC
GTCTGGCTCTGCAAGCTCGCCAGGCTCACTGTCGAAGACGTCTCCCTCTC
CTCCACCGTCGCCGTTTCCACCACCCCTCCCTCCACCCCTGCCTCCGCCA
CCTCCCCATGCGTGCAACACGTTTGCACCAGCGCGGGTTTTGCGTTCTTC
TCCCTGGCTGCTACCCACGCCGTCCATCCCCGACACGTCCTGGGCGTCGA
CCTTCACCTCCAAACCCTCTGGGTTCATGCTTCCACTACCATCCTTCCTC
CCAGCACCAGCACCAGCATCATTAGCAGCATTCGTAGCAACAGCAATTAC
AACAACACTAGCAAAGGAGGGTATTTTTTCAAAGCCAATCTCGATGGAAT
CCGCACAGGCCTGGTGGTCGAGCCTCACGAAGACCGTCCTATCTCCTCCC
ACCTCGTCTTTGATGGCACCCCTGTTATCCACCTCGACCCTTCCTCCCTC
CCTCCCTCCTCTCCCATATCACCATCCACGGGCGTTCCTGCCCGCCCTCC
CTC
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Coding sequence (CDS) from alignment at scaffold_8:317261..318913+

>mRNA_3890 ID=mRNA_3890|Name=jgi.p|Nanoce1779_2|629601|organism=Nannochloropsis oceanica|type=CDS|length=2340bp|location=Sequence derived from alignment at scaffold_8:317261..318913+ (Nannochloropsis oceanica)
ATGGGTGGCGGCGGCTTTCTATTCCGCCTCGCGCTATGGGGTCTCACCTT
CTTTCTACGCTGGCTACTGGTCCCTCTGTGCATTGCCATCGTCGTCGCCC
TCAATCCGCCAACGCTTGGCGAGCTCATCTCCAACCTCGTCATCTTCATC
TGCGGCAAATTGCACGGCTTCAAAAGCAAGCAGGAAGTCAGGCTCTTCCG
TGTACAGGCCATCCACTTGTGGGGATGGAGAGTGGAGGGGTTGGAAGCCA
CGATCCTTGAGACGAAGGGGAATGGAGCTGTGGAGGCCGTTGTGTTGTTG
GTGCGGTGCATGGAGGTCCGTTCGACGATCAAGGCAGCCCTCTACTCCTT
CTTCCAAACCAAGCCCTTCGAGATCCGCTTCTCGGGAATCCACGTCAGGA
AAATACCCTGGTCCTCACCCCCTCCCTCCTCCTCCTCCTCTTCCTTTTCT
TGTTCGTCCGCCGACGCAGTTATTATGCCGCATCCCCCCCCCCCGCTTAA
ACCTCTCAGGAGACTCTCCTCACCAGTATCACCTCCAACCTCAGCAACAA
CAGCCGTAATAGCAGTAACGGCAGTAAAAAAAGCCACAGCAGCCACGGAA
ATCAATAATAAGGAGAAAGGAGGTGTATTTACACCCATCACCCAAAGCCC
CAAGACCTGGAATCGGGTCGTCTGGCTCTGCAAGCTCGCCAGGCTCACTG
TCGAAGACGTCTCCCTCTCCTCCACCGTCGCCGTTTCCACCACCCCTCCC
TCCACCCCTGCCTCCGCCACCTCCCCATGCGTGCAACACGTTTGCACCAG
CGCGGGTTTTGCGTTCTTCTCCCTGGCTGCTACCCACGCCGTCCATCCCC
GACACGTCCTGGGCGTCGACCTTCACCTCCAAACCCTCTGGGTTCATGCT
TCCACTACCATCCTTCCTCCCAGCACCAGCACCAGCATCATTAGCAGCAT
TCGTAGCAACAGCAATTACAACAACACTAGCAAAGGAGGGTATTTTTTCA
AAGCCAATCTCGATGGAATCCGCACAGGCCTGGTGGTCGAGCCTCACGAA
GACCGTCCTATCTCCTCCCACCTCGTCTTTGATGGCACCCCTGTTATCCA
CCTCGACCCTTCCTCCCTCCCTCCCTCCTCTCCCATATCACCATCCACGG
GCGTTCCTGCCCGCCCTCCCATGGGTGGCGGCGGCTTTCTATTCCGCCTC
GCGCTATGGGGTCTCACCTTCTTTCTACGCTGGCTACTGGTCCCTCTGTG
CATTGCCATCGTCGTCGCCCTCAATCCGCCAACGCTTGGCGAGCTCATCT
CCAACCTCGTCATCTTCATCTGCGGCAAATTGCACGGCTTCAAAAGCAAG
CAGGAAGTCAGGCTCTTCCGTGTACAGGCCATCCACTTGTGGGGATGGAG
AGTGGAGGGGTTGGAAGCCACGATCCTTGAGACGAAGGGGAATGGAGCTG
TGGAGGCCGTTGTGTTGTTGGTGCGGTGCATGGAGGTCCGTTCGACGATC
AAGGCAGCCCTCTACTCCTTCTTCCAAACCAAGCCCTTCGAGATCCGCTT
CTCGGGAATCCACGTCAGGAAAATACCCTGGTCCTCACCCCCTCCCTCCT
CCTCCTCCTCTTCCTTTTCTTGTTCGTCCGCCGACGCAGTTATTATGCCG
CATCCCCCCCCCCCGCTTAAACCTCTCAGGAGACTCTCCTCACCAGTATC
ACCTCCAACCTCAGCAACAACAGCCGTAATAGCAGTAACGGCAGTAAAAA
AAGCCACAGCAGCCACGGAAATCAATAATAAGGAGAAAGGAGGTGTATTT
ACACCCATCACCCAAAGCCCCAAGACCTGGAATCGGGTCGTCTGGCTCTG
CAAGCTCGCCAGGCTCACTGTCGAAGACGTCTCCCTCTCCTCCACCGTCG
CCGTTTCCACCACCCCTCCCTCCACCCCTGCCTCCGCCACCTCCCCATGC
GTGCAACACGTTTGCACCAGCGCGGGTTTTGCGTTCTTCTCCCTGGCTGC
TACCCACGCCGTCCATCCCCGACACGTCCTGGGCGTCGACCTTCACCTCC
AAACCCTCTGGGTTCATGCTTCCACTACCATCCTTCCTCCCAGCACCAGC
ACCAGCATCATTAGCAGCATTCGTAGCAACAGCAATTACAACAACACTAG
CAAAGGAGGGTATTTTTTCAAAGCCAATCTCGATGGAATCCGCACAGGCC
TGGTGGTCGAGCCTCACGAAGACCGTCCTATCTCCTCCCACCTCGTCTTT
GATGGCACCCCTGTTATCCACCTCGACCCTTCCTCCCTCCCTCCCTCCTC
TCCCATATCACCATCCACGGGCGTTCCTGCCCGCCCTCCC
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Synonyms
Publications