jgi.p|Nanoce1779_2|588841, mRNA_4357 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|588841
Unique NamemRNA_4357
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1410
Alignment locationscaffold_10:379135..380744 +

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Properties
Property NameValue
TranscriptId588927
TrackFilteredModels2
ProteinId588841
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:379135..380744 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588841gene_4357Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588841mRNA_4357-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4357CDS_4357Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4357 ID=mRNA_4357|Name=jgi.p|Nanoce1779_2|588841|organism=Nannochloropsis oceanica|type=mRNA|length=1410bp
ACAGTGCGTTCAGGCCACGCGCACTTTCGCATGCGCCCCGTCCTTCTCTC
GGCGCTGCCAGTGGTCGTGGCGCCCCTGATTTTGGCGCTTTTGGCAGCAA
GACACGTCAGCGGGTTTGGACACCGCGGCCTCGCCATGTCTACCTTCCTC
GGCCCCTCGCGGCGTATTGGTACCAGCCGACGGCAGCCGCAGCGACAGCA
GCACCAGCAGCACTTTCGACGTTGTAGTCCTCGTCTTGCCATGACAGCTA
CGGGGGAAGACGAATGGGTCTTTGATGTGCTCTTTACGGGGACCGGACAA
TCGTCATCCGTGCCATTGCTCAAGCACGCGGTCCGAGGGACGTGCAAGGT
GTGCAACGACGCCTTGATGAGGCCGGGATCGAAAAACAAGCGCAATAATG
TCTCCTGCGCTATTATCAAGCGGAAGAAGTCCACGCCCGTCGGCGAAACA
CCACGGATCGCTGCACTGATCGACTGCGGCAAGACCTTCCGGGAAGTCGT
GTTGAACCTGTTCCCCCGCTATGGACTACAAGAAGTAGGGGCATTGTTGC
TAACGCATGGACATGCGGATGCTATTCTGGGGATGGATGATTTGAGAGAT
TTGCAACTGTATGAACACGTCGACCCGGGGGTGAGGTTTCCCTCGGGGCC
GATCAATGTGTTTTTGCATGAGGCGACCATGGCGGCGGTTAAATTACGGT
TCGATTATTTGACAAATAAACCTGTCTATCTAAACGAGGCGATGGGAGTA
TTGGAGCGACCGGTGTCGTATTTAAAGTTCAATGTAATTGAGACGGACGC
GGACATTGATTCGGGCGCAACGGATGGGGTGCCTGTAAGAGCATTGCCTG
TTTTGCATGGAGGGGACTATATTTGCTTAGGATTCGGGGTGGGAAGGCCG
GGGGAGTTTGTGTATTTGTCGGATGTGAAGAATATCCCTGAAAAGACTAT
GAGCTATTTGAAGTCTTTGCCGAAAATAAAGACGTTGGTGGTTGATTGCA
TTAAAATGACCACAGGGAATTTTGCGCACGCGGCGTTCGAGGAAGTGAGG
GGGTGGGTGGATGAATTGAAGCCGGACAAGGTGTGGTTGGTGGGGATGGG
GTGTGGGATCGGGGAGCACGATGATGCAAATCGGAGGATACATGAGATGG
GGTATCCGATGGTAGAGTTGGCGTATGACGGTCTTTACGTGGAGGGCTTT
TCGCTGTAAAGTAGAAAGAAAAGGAAGGAGGGAGATAGGTAGAGTGCGAG
GGGAGGGGACGCAGTATTAATAGATAAGTCGATGGTTTGCTACAGGATAA
ATCTAGAAATGACATTTCGGTTTGATTGTGTTGAGATGAAAATGAAAATA
AGAGCGTGGATCAAGAATGACCAATCACAGAGAAACTCGAAGAACAACGC
TAATCTTGAC
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protein sequence of jgi.p|Nanoce1779_2|588841

>mRNA_4357-protein ID=mRNA_4357-protein|Name=jgi.p|Nanoce1779_2|588841|organism=Nannochloropsis oceanica|type=polypeptide|length=393bp
MRPVLLSALPVVVAPLILALLAARHVSGFGHRGLAMSTFLGPSRRIGTSR
RQPQRQQHQQHFRRCSPRLAMTATGEDEWVFDVLFTGTGQSSSVPLLKHA
VRGTCKVCNDALMRPGSKNKRNNVSCAIIKRKKSTPVGETPRIAALIDCG
KTFREVVLNLFPRYGLQEVGALLLTHGHADAILGMDDLRDLQLYEHVDPG
VRFPSGPINVFLHEATMAAVKLRFDYLTNKPVYLNEAMGVLERPVSYLKF
NVIETDADIDSGATDGVPVRALPVLHGGDYICLGFGVGRPGEFVYLSDVK
NIPEKTMSYLKSLPKIKTLVVDCIKMTTGNFAHAAFEEVRGWVDELKPDK
VWLVGMGCGIGEHDDANRRIHEMGYPMVELAYDGLYVEGFSL*
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mRNA from alignment at scaffold_10:379135..380744+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4357 ID=mRNA_4357|Name=jgi.p|Nanoce1779_2|588841|organism=Nannochloropsis oceanica|type=mRNA|length=1610bp|location=Sequence derived from alignment at scaffold_10:379135..380744+ (Nannochloropsis oceanica)
ACAGTGCGTTCAGGCCACGCGCACTTTCGCATGCGCCCCGTCCTTCTCTC
GGCGCTGCCAGTGGTCGTGGCGCCCCTGATTTTGGCGCTTTTGGCAGCAA
GACACGTCAGCGGGTTTGGACACCGCGGCCTCGCCATGTCTACCTTCCTC
GGCCCCTCGCGGCGTATTGGTACCAGCCGACGGCAGCCGCAGCGACAGCA
GCACCAGCAGCACTTTCGACGTTGTAGTCCTCGTCTTGCCATGACAGCTA
CGGGGGAAGACGAATGGGTCTTTGATGTGCTCTTTACGGGGACCGGACAA
TCGTCATCCGTGCCATTGCTCAAGCACGCGGTCCGAGGGACGTGCAAGGT
GTGCAACGACGCCTTGATGAGGCCGGGATCGAAAAACAAGTACGACGGGC
AGTGAATGGGATATTGGCGGGGCGACAGAAGGGAAAGACGAGAGTGAACT
ATGATAATGAATTATTCAATTTTGGGCCCCCTCCCTCCTCGCTTCCTCCC
TTGTGTCCTTTCTCCGCTGTATGTCAAATTTTACTTGCGTCTTATCTAAC
CCGTCCCCAAACCGAACTTCTTCCCACTTAAAAATGCAGGCGCAATAATG
TCTCCTGCGCTATTATCAAGCGGAAGAAGTCCACGCCCGTCGGCGAAACA
CCACGGATCGCTGCACTGATCGACTGCGGCAAGACCTTCCGGGAAGTCGT
GTTGAACCTGTTCCCCCGCTATGGACTACAAGAAGTAGGGGCATTGTTGC
TAACGCATGGACATGCGGATGCTATTCTGGGGATGGATGATTTGAGAGAT
TTGCAACTGTATGAACACGTCGACCCGGGGGTGAGGTTTCCCTCGGGGCC
GATCAATGTGTTTTTGCATGAGGCGACCATGGCGGCGGTTAAATTACGGT
TCGATTATTTGACAAATAAACCTGTCTATCTAAACGAGGCGATGGGAGTA
TTGGAGCGACCGGTGTCGTATTTAAAGTTCAATGTAATTGAGACGGACGC
GGACATTGATTCGGGCGCAACGGATGGGGTGCCTGTAAGAGCATTGCCTG
TTTTGCATGGAGGGGACTATATTTGCTTAGGATTCGGGGTGGGAAGGCCG
GGGGAGTTTGTGTATTTGTCGGATGTGAAGAATATCCCTGAAAAGACTAT
GAGCTATTTGAAGTCTTTGCCGAAAATAAAGACGTTGGTGGTTGATTGCA
TTAAAATGACCACAGGGAATTTTGCGCACGCGGCGTTCGAGGAAGTGAGG
GGGTGGGTGGATGAATTGAAGCCGGACAAGGTGTGGTTGGTGGGGATGGG
GTGTGGGATCGGGGAGCACGATGATGCAAATCGGAGGATACATGAGATGG
GGTATCCGATGGTAGAGTTGGCGTATGACGGTCTTTACGTGGAGGGCTTT
TCGCTGTAAAGTAGAAAGAAAAGGAAGGAGGGAGATAGGTAGAGTGCGAG
GGGAGGGGACGCAGTATTAATAGATAAGTCGATGGTTTGCTACAGGATAA
ATCTAGAAATGACATTTCGGTTTGATTGTGTTGAGATGAAAATGAAAATA
AGAGCGTGGATCAAGAATGACCAATCACAGAGAAACTCGAAGAACAACGC
TAATCTTGAC
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Coding sequence (CDS) from alignment at scaffold_10:379135..380744+

>mRNA_4357 ID=mRNA_4357|Name=jgi.p|Nanoce1779_2|588841|organism=Nannochloropsis oceanica|type=CDS|length=2358bp|location=Sequence derived from alignment at scaffold_10:379135..380744+ (Nannochloropsis oceanica)
ATGCGCCCCGTCCTTCTCTCGGCGCTGCCAGTGGTCGTGGCGCCCCTGAT
TTTGGCGCTTTTGGCAGCAAGACACGTCAGCGGGTTTGGACACCGCGGCC
TCGCCATGTCTACCTTCCTCGGCCCCTCGCGGCGTATTGGTACCAGCCGA
CGGCAGCCGCAGCGACAGCAGCACCAGCAGCACTTTCGACGTTGTAGTCC
TCGTCTTGCCATGACAGCTACGGGGGAAGACGAATGGGTCTTTGATGTGC
TCTTTACGGGGACCGGACAATCGTCATCCGTGCCATTGCTCAAGCACGCG
GTCCGAGGGACGTGCAAGGTGTGCAACGACGCCTTGATGAGGCCGGGATC
GAAAAACAAGCGCAATAATGTCTCCTGCGCTATTATCAAGCGGAAGAAGT
CCACGCCCGTCGGCGAAACACCACGGATCGCTGCACTGATCGACTGCGGC
AAGACCTTCCGGGAAGTCGTGTTGAACCTGTTCCCCCGCTATGGACTACA
AGAAGTAGGGGCATTGTTGCTAACGCATGGACATGCGGATGCTATTCTGG
GGATGGATGATTTGAGAGATTTGCAACTGTATGAACACGTCGACCCGGGG
GTGAGGTTTCCCTCGGGGCCGATCAATGTGTTTTTGCATGAGGCGACCAT
GGCGGCGGTTAAATTACGGTTCGATTATTTGACAAATAAACCTGTCTATC
TAAACGAGGCGATGGGAGTATTGGAGCGACCGGTGTCGTATTTAAAGTTC
AATGTAATTGAGACGGACGCGGACATTGATTCGGGCGCAACGGATGGGGT
GCCTGTAAGAGCATTGCCTGTTTTGCATGGAGGGGACTATATTTGCTTAG
GATTCGGGGTGGGAAGGCCGGGGGAGTTTGTGTATTTGTCGGATGTGAAG
AATATCCCTGAAAAGACTATGAGCTATTTGAAGTCTTTGCCGAAAATAAA
GACGTTGGTGGTTGATTGCATTAAAATGACCACAGGGAATTTTGCGCACG
CGGCGTTCGAGGAAGTGAGGGGGTGGGTGGATGAATTGAAGCCGGACAAG
GTGTGGTTGGTGGGGATGGGGTGTGGGATCGGGGAGCACGATGATGCAAA
TCGGAGGATACATGAGATGGGGTATCCGATGGTAGAGTTGGCGTATGACG
GTCTTTACGTGGAGGGCTTTTCGCTGTAAATGCGCCCCGTCCTTCTCTCG
GCGCTGCCAGTGGTCGTGGCGCCCCTGATTTTGGCGCTTTTGGCAGCAAG
ACACGTCAGCGGGTTTGGACACCGCGGCCTCGCCATGTCTACCTTCCTCG
GCCCCTCGCGGCGTATTGGTACCAGCCGACGGCAGCCGCAGCGACAGCAG
CACCAGCAGCACTTTCGACGTTGTAGTCCTCGTCTTGCCATGACAGCTAC
GGGGGAAGACGAATGGGTCTTTGATGTGCTCTTTACGGGGACCGGACAAT
CGTCATCCGTGCCATTGCTCAAGCACGCGGTCCGAGGGACGTGCAAGGTG
TGCAACGACGCCTTGATGAGGCCGGGATCGAAAAACAAGCGCAATAATGT
CTCCTGCGCTATTATCAAGCGGAAGAAGTCCACGCCCGTCGGCGAAACAC
CACGGATCGCTGCACTGATCGACTGCGGCAAGACCTTCCGGGAAGTCGTG
TTGAACCTGTTCCCCCGCTATGGACTACAAGAAGTAGGGGCATTGTTGCT
AACGCATGGACATGCGGATGCTATTCTGGGGATGGATGATTTGAGAGATT
TGCAACTGTATGAACACGTCGACCCGGGGGTGAGGTTTCCCTCGGGGCCG
ATCAATGTGTTTTTGCATGAGGCGACCATGGCGGCGGTTAAATTACGGTT
CGATTATTTGACAAATAAACCTGTCTATCTAAACGAGGCGATGGGAGTAT
TGGAGCGACCGGTGTCGTATTTAAAGTTCAATGTAATTGAGACGGACGCG
GACATTGATTCGGGCGCAACGGATGGGGTGCCTGTAAGAGCATTGCCTGT
TTTGCATGGAGGGGACTATATTTGCTTAGGATTCGGGGTGGGAAGGCCGG
GGGAGTTTGTGTATTTGTCGGATGTGAAGAATATCCCTGAAAAGACTATG
AGCTATTTGAAGTCTTTGCCGAAAATAAAGACGTTGGTGGTTGATTGCAT
TAAAATGACCACAGGGAATTTTGCGCACGCGGCGTTCGAGGAAGTGAGGG
GGTGGGTGGATGAATTGAAGCCGGACAAGGTGTGGTTGGTGGGGATGGGG
TGTGGGATCGGGGAGCACGATGATGCAAATCGGAGGATACATGAGATGGG
GTATCCGATGGTAGAGTTGGCGTATGACGGTCTTTACGTGGAGGGCTTTT
CGCTGTAA
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Synonyms
Publications