jgi.p|Nanoce1779_2|555177, mRNA_4399 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|555177
Unique NamemRNA_4399
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2045
Alignment locationscaffold_10:495923..497967 -

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Properties
Property NameValue
TranscriptId555263
TrackFilteredModels2
ProteinId555177
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:495923..497967 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|555177gene_4399Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|555177mRNA_4399-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4399CDS_4399Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4399 ID=mRNA_4399|Name=jgi.p|Nanoce1779_2|555177|organism=Nannochloropsis oceanica|type=mRNA|length=2045bp
AGTGGACGGAGTCAATGCACCTGGGCAGAAGGCATCGAGAGCCATCCATA
CATAGCCCAGAATAACAGGTGATGGGCGAGAACGTTGGCGCCAGAGCGAA
GTGAAGCGAAGACCCGACGAACCTAAAACGTGAGAGACGATGCTACTTTA
CTTCTTCCTTCCATGCCCCTTTTGGTCCCTATCTTGACTGTAGTACGAAA
TTGAGTACTGCATTAATTTCTTCGCCTTTCAACCACAGCAAACCAACCTC
CCCTTTCCCTCACCCTGCCAGGCCTACTCTACGCTAGGAGCTGGCACATC
CCAACGCGTAACGTCTTTACCCTACTTCAGCCAAGCAGCAGCAGAACCTT
AACAAAAACCAAACGTACTACACGTACATAAACGCATCCACAAGGTGCAC
TAGGCACTCACATCAATCTGCCACGCGCTGGACACCACGCCGCCCAGCCA
TAGAAAGATGGGGCCGCAATTACTCCCAACGCAGCTGCCACCATCACCAC
AACAGGTCGCATTCCGATCACAATCCCCATACCACAACCCTTCCGGTCCA
CCAAGCCAATTGGAACAATTCAAGGCAGCTCTGCACTCGAACCGGCCATT
TGAGTATGGTTATTGGATTTCGGTTGGTCTTGCTTCGTTGTTTGACGGGG
CCATGCGTGCATTGGGTCCGTGCCTTGTCGTGCTCGCCTGCGTGTTGATC
GGCCTGGTCACGTGGCTCTACTACGGCTACTTACTCCTTGAATTCGTAGG
TCAGGACTTGACGTCTAATAAAGAACGTCACACCTCGACTTCCTACTTTA
CCATGGAGCGAATTCTGCATGGGGGCTTCACGGGCTTCTTGCTGTTCAAC
ACCCTCTATAACTACTTCTACTGCGTCATGACCTCCCCTGGCACCCCCTC
CACTCCACACCCTCCATCACAACCCATCACAACCACCAGCACTACCTCTC
TCTACGAAGAGAGCAGCAGTAGTCTCTCCCACGCGGTTGACGACGCAACT
GCCGCAGGGGCGGCGCAAGCCTGTCTTATGGCTGCGAACAGCACTGGGGG
TGTTGACCCCAAAACGTACGGGTTCTGTAAAAAATGCCGGATCCCCCGCC
CGCCCCGTGCGCACCACTGCCATGTTTGCAAGCACTGCGTATTGGGGATG
GACCATCATTGTCCTTGGGTTGGTCAGTGTGTCGGGTATTTTAATTATCG
TTACTTCGTGCTATTTATGGCTTATTTGTGGACAGCGTGTCTATATGGTA
CTCTATTGCTAGCCCGTCCTTTCCTTGGAATGGTGTATGGGACTGGAGGT
GGGAGTAGGCCACGCATGCCTGTCATTATCGGTCCATTGGCCTCTGCGAG
ATCGGCGATTATTTTTACGTTCGTCTTGTCTCTGTCGGTGGGTCTGGCCC
TGTCGGGGTTATTGGGGTGGCATCTGTTTTTGATATCGACGGGACAGACC
ACGATTGAATTTTACATCAACAAAGCACGGAGAGAGCGAGCGAGGCTAAG
AGGGGGCTCTTACACCAACCCATATGATATGGGGTTCAGAAAAAATTGGC
AGCAGGTGTTAGGAACTGAATTATCGTTGTGGAGGGCCGTGCTGCCTTCT
AGTAGGTTGCCTCCGCCGATGCGATATAGAGGGGGATGGGAAAGGGAAGA
AGGCAAGGAGGATTTTGAACAAGAGGTAGAGTTGGGGATGATGGAAGGTT
TGGAGGAAGGGAGGGAGGAGGAGCGGGGGATAAAGGATTCTCGGAGAGGA
GGAAGAAGGGAGGGAGAGAGGAGGGAAGGGGTGACAGCAGGGGCTGGGGG
GGGACGAAATCGAGGACGGAGAAGGAGTGGGGGAGAGGGTGCTGAAATGG
GAGAAGGAGAGCGAGACTTGTCTTATGTGATAGTGTAAATGACGTTGAAA
GTTGATGAGGAGGGGAAAAGACGAATCAAAAGATGAAGAAGCTCGGGGGC
GGAAGCGCAACATATAAAGCATGTAAAAAAATGACTGAGGAGACTCGGAA
ATGGAGCGTGAAATTGACATGGGTTGCAGGTCTTTGTCTCGGTGC
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protein sequence of jgi.p|Nanoce1779_2|555177

>mRNA_4399-protein ID=mRNA_4399-protein|Name=jgi.p|Nanoce1779_2|555177|organism=Nannochloropsis oceanica|type=polypeptide|length=477bp
MGPQLLPTQLPPSPQQVAFRSQSPYHNPSGPPSQLEQFKAALHSNRPFEY
GYWISVGLASLFDGAMRALGPCLVVLACVLIGLVTWLYYGYLLLEFVGQD
LTSNKERHTSTSYFTMERILHGGFTGFLLFNTLYNYFYCVMTSPGTPSTP
HPPSQPITTTSTTSLYEESSSSLSHAVDDATAAGAAQACLMAANSTGGVD
PKTYGFCKKCRIPRPPRAHHCHVCKHCVLGMDHHCPWVGQCVGYFNYRYF
VLFMAYLWTACLYGTLLLARPFLGMVYGTGGGSRPRMPVIIGPLASARSA
IIFTFVLSLSVGLALSGLLGWHLFLISTGQTTIEFYINKARRERARLRGG
SYTNPYDMGFRKNWQQVLGTELSLWRAVLPSSRLPPPMRYRGGWEREEGK
EDFEQEVELGMMEGLEEGREEERGIKDSRRGGRREGERREGVTAGAGGGR
NRGRRRSGGEGAEMGEGERDLSYVIV*
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mRNA from alignment at scaffold_10:495923..497967-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4399 ID=mRNA_4399|Name=jgi.p|Nanoce1779_2|555177|organism=Nannochloropsis oceanica|type=mRNA|length=2045bp|location=Sequence derived from alignment at scaffold_10:495923..497967- (Nannochloropsis oceanica)
AGTGGACGGAGTCAATGCACCTGGGCAGAAGGCATCGAGAGCCATCCATA
CATAGCCCAGAATAACAGGTGATGGGCGAGAACGTTGGCGCCAGAGCGAA
GTGAAGCGAAGACCCGACGAACCTAAAACGTGAGAGACGATGCTACTTTA
CTTCTTCCTTCCATGCCCCTTTTGGTCCCTATCTTGACTGTAGTACGAAA
TTGAGTACTGCATTAATTTCTTCGCCTTTCAACCACAGCAAACCAACCTC
CCCTTTCCCTCACCCTGCCAGGCCTACTCTACGCTAGGAGCTGGCACATC
CCAACGCGTAACGTCTTTACCCTACTTCAGCCAAGCAGCAGCAGAACCTT
AACAAAAACCAAACGTACTACACGTACATAAACGCATCCACAAGGTGCAC
TAGGCACTCACATCAATCTGCCACGCGCTGGACACCACGCCGCCCAGCCA
TAGAAAGATGGGGCCGCAATTACTCCCAACGCAGCTGCCACCATCACCAC
AACAGGTCGCATTCCGATCACAATCCCCATACCACAACCCTTCCGGTCCA
CCAAGCCAATTGGAACAATTCAAGGCAGCTCTGCACTCGAACCGGCCATT
TGAGTATGGTTATTGGATTTCGGTTGGTCTTGCTTCGTTGTTTGACGGGG
CCATGCGTGCATTGGGTCCGTGCCTTGTCGTGCTCGCCTGCGTGTTGATC
GGCCTGGTCACGTGGCTCTACTACGGCTACTTACTCCTTGAATTCGTAGG
TCAGGACTTGACGTCTAATAAAGAACGTCACACCTCGACTTCCTACTTTA
CCATGGAGCGAATTCTGCATGGGGGCTTCACGGGCTTCTTGCTGTTCAAC
ACCCTCTATAACTACTTCTACTGCGTCATGACCTCCCCTGGCACCCCCTC
CACTCCACACCCTCCATCACAACCCATCACAACCACCAGCACTACCTCTC
TCTACGAAGAGAGCAGCAGTAGTCTCTCCCACGCGGTTGACGACGCAACT
GCCGCAGGGGCGGCGCAAGCCTGTCTTATGGCTGCGAACAGCACTGGGGG
TGTTGACCCCAAAACGTACGGGTTCTGTAAAAAATGCCGGATCCCCCGCC
CGCCCCGTGCGCACCACTGCCATGTTTGCAAGCACTGCGTATTGGGGATG
GACCATCATTGTCCTTGGGTTGGTCAGTGTGTCGGGTATTTTAATTATCG
TTACTTCGTGCTATTTATGGCTTATTTGTGGACAGCGTGTCTATATGGTA
CTCTATTGCTAGCCCGTCCTTTCCTTGGAATGGTGTATGGGACTGGAGGT
GGGAGTAGGCCACGCATGCCTGTCATTATCGGTCCATTGGCCTCTGCGAG
ATCGGCGATTATTTTTACGTTCGTCTTGTCTCTGTCGGTGGGTCTGGCCC
TGTCGGGGTTATTGGGGTGGCATCTGTTTTTGATATCGACGGGACAGACC
ACGATTGAATTTTACATCAACAAAGCACGGAGAGAGCGAGCGAGGCTAAG
AGGGGGCTCTTACACCAACCCATATGATATGGGGTTCAGAAAAAATTGGC
AGCAGGTGTTAGGAACTGAATTATCGTTGTGGAGGGCCGTGCTGCCTTCT
AGTAGGTTGCCTCCGCCGATGCGATATAGAGGGGGATGGGAAAGGGAAGA
AGGCAAGGAGGATTTTGAACAAGAGGTAGAGTTGGGGATGATGGAAGGTT
TGGAGGAAGGGAGGGAGGAGGAGCGGGGGATAAAGGATTCTCGGAGAGGA
GGAAGAAGGGAGGGAGAGAGGAGGGAAGGGGTGACAGCAGGGGCTGGGGG
GGGACGAAATCGAGGACGGAGAAGGAGTGGGGGAGAGGGTGCTGAAATGG
GAGAAGGAGAGCGAGACTTGTCTTATGTGATAGTGTAAATGACGTTGAAA
GTTGATGAGGAGGGGAAAAGACGAATCAAAAGATGAAGAAGCTCGGGGGC
GGAAGCGCAACATATAAAGCATGTAAAAAAATGACTGAGGAGACTCGGAA
ATGGAGCGTGAAATTGACATGGGTTGCAGGTCTTTGTCTCGGTGC
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Coding sequence (CDS) from alignment at scaffold_10:495923..497967-

>mRNA_4399 ID=mRNA_4399|Name=jgi.p|Nanoce1779_2|555177|organism=Nannochloropsis oceanica|type=CDS|length=1431bp|location=Sequence derived from alignment at scaffold_10:495923..497967- (Nannochloropsis oceanica)
ATGGGGCCGCAATTACTCCCAACGCAGCTGCCACCATCACCACAACAGGT
CGCATTCCGATCACAATCCCCATACCACAACCCTTCCGGTCCACCAAGCC
AATTGGAACAATTCAAGGCAGCTCTGCACTCGAACCGGCCATTTGAGTAT
GGTTATTGGATTTCGGTTGGTCTTGCTTCGTTGTTTGACGGGGCCATGCG
TGCATTGGGTCCGTGCCTTGTCGTGCTCGCCTGCGTGTTGATCGGCCTGG
TCACGTGGCTCTACTACGGCTACTTACTCCTTGAATTCGTAGGTCAGGAC
TTGACGTCTAATAAAGAACGTCACACCTCGACTTCCTACTTTACCATGGA
GCGAATTCTGCATGGGGGCTTCACGGGCTTCTTGCTGTTCAACACCCTCT
ATAACTACTTCTACTGCGTCATGACCTCCCCTGGCACCCCCTCCACTCCA
CACCCTCCATCACAACCCATCACAACCACCAGCACTACCTCTCTCTACGA
AGAGAGCAGCAGTAGTCTCTCCCACGCGGTTGACGACGCAACTGCCGCAG
GGGCGGCGCAAGCCTGTCTTATGGCTGCGAACAGCACTGGGGGTGTTGAC
CCCAAAACGTACGGGTTCTGTAAAAAATGCCGGATCCCCCGCCCGCCCCG
TGCGCACCACTGCCATGTTTGCAAGCACTGCGTATTGGGGATGGACCATC
ATTGTCCTTGGGTTGGTCAGTGTGTCGGGTATTTTAATTATCGTTACTTC
GTGCTATTTATGGCTTATTTGTGGACAGCGTGTCTATATGGTACTCTATT
GCTAGCCCGTCCTTTCCTTGGAATGGTGTATGGGACTGGAGGTGGGAGTA
GGCCACGCATGCCTGTCATTATCGGTCCATTGGCCTCTGCGAGATCGGCG
ATTATTTTTACGTTCGTCTTGTCTCTGTCGGTGGGTCTGGCCCTGTCGGG
GTTATTGGGGTGGCATCTGTTTTTGATATCGACGGGACAGACCACGATTG
AATTTTACATCAACAAAGCACGGAGAGAGCGAGCGAGGCTAAGAGGGGGC
TCTTACACCAACCCATATGATATGGGGTTCAGAAAAAATTGGCAGCAGGT
GTTAGGAACTGAATTATCGTTGTGGAGGGCCGTGCTGCCTTCTAGTAGGT
TGCCTCCGCCGATGCGATATAGAGGGGGATGGGAAAGGGAAGAAGGCAAG
GAGGATTTTGAACAAGAGGTAGAGTTGGGGATGATGGAAGGTTTGGAGGA
AGGGAGGGAGGAGGAGCGGGGGATAAAGGATTCTCGGAGAGGAGGAAGAA
GGGAGGGAGAGAGGAGGGAAGGGGTGACAGCAGGGGCTGGGGGGGGACGA
AATCGAGGACGGAGAAGGAGTGGGGGAGAGGGTGCTGAAATGGGAGAAGG
AGAGCGAGACTTGTCTTATGTGATAGTGTAA
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Synonyms
Publications