jgi.p|Nanoce1779_2|630249, mRNA_4376 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|630249
Unique Name	mRNA_4376
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1232
Alignment location	scaffold_10:433769..436264 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	630335
Track	FilteredModels2
ProteinId	630249

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:433769..436264 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|630249	gene_4376	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|630249	mRNA_4376-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4376	CDS_4376	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:433769..436264+
coding sequence from alignment at scaffold_10:433769..436264+

mRNA sequence

>mRNA_4376 ID=mRNA_4376|Name=jgi.p|Nanoce1779_2|630249|organism=Nannochloropsis oceanica|type=mRNA|length=1232bp
ACAGGCACTGAAGGCTTGTGGTTTTGCCAAAATATGGGCTCCCCAAGAGG
AGGAATCGTCTCCACCGCAGGTTGCAGCACGAAGACGAACAACAGCAGTC
GACGACGGACCAGCTTCATGGTGCTGCTCCTGGTGATCGTGGGGGCCGTG
CTGACAACAACACAAGCAAGACCAGCTGCAGATGTGGGGAGCAGCAGGCC
ACCATCTTCTACAGCGGCCAGGAAACGCGCAGCATTGCTCAAGGCCACCT
CAAGTAGCAAGAAGAAGCAGCCCAAACGCGACGACGAAGATGAATCAACA
GGCTCTTCCAAGCTCGACCGCATGCCAATAGTCGCCGCTGCCGCCAAGCG
CAGCAAAAAACGTCGTTCTTCCTCCGCCTCCCTAGAAGAGGACGACCCGG
ATGTCATCCCTTTCTTGGCCAGCACTCGCGTTAAACGTGGAAGTGCCCTC
ACTTCTTCCGGTGCTGGTGGAGTATTGGCCACCCTCGCTAAGAGGGCAGG
CAAGGCATTGGTGGCTTCTTCTGCCTTTCGCTTCGTTGCAGAAGAGAAGC
TGTTTGAGACGGTCATCGGTATGCTCGCCTACCGGGTCGCATTCCAATGG
AGCAAAGACACCACGGCCTTGAAGAAGGCTCGGTTGTTATTCACGTTGTA
CATATGCTTGTATTTGGGTGCCCTGCTATATTCTAGACAGCAGGCTATCG
AGCTGCAGGACACACGAACATTGAAGGTAGCGGCCATGCCAGCCATGCTT
TCTTCCTTCTTCGACGTGGCAAAGAAGCTGAAAAAGGGCGAGGGGATGGG
AGAAGCCGGAGTCGGTGGTCTTATGGGAGGCCTGCAGGGACTGGCTTCCC
CACAAGAGAAGGAGATGACGTTTAAGGAGTATGATTTGGGACAGGTCAAG
AGCGCCCTGGACCGTTTTTCCATGTTCTTGGTGGGGATGACGTTTTTGCA
TTTCAAGATGAAGAACACGTACATGATTATGTACTGGGGGTGCAAGGACA
AGGAATGGGGGCCTGTGCATAACAATGGTAAGAAGAACAAGGCGAAGGAG
GCGAAGGAGGAGAGAATGAATAGGGATAAGAACAAGCTTGCTTCATCGAT
AAATTGGAGAATTTTAAAAACGTGAGGACGTGAGGGATGGCGAGGGAAAA
ATAAGAAATAACGTCTCAGCTTTGATTGCCCCACGCAGATTAGGATCCTT
CCCGCCAAAAGAAACAACGACTCGAAGAAAAG

protein sequence of jgi.p|Nanoce1779_2|630249

>mRNA_4376-protein ID=mRNA_4376-protein|Name=jgi.p|Nanoce1779_2|630249|organism=Nannochloropsis oceanica|type=polypeptide|length=364bp
MGSPRGGIVSTAGCSTKTNNSSRRRTSFMVLLLVIVGAVLTTTQARPAAD
VGSSRPPSSTAARKRAALLKATSSSKKKQPKRDDEDESTGSSKLDRMPIV
AAAAKRSKKRRSSSASLEEDDPDVIPFLASTRVKRGSALTSSGAGGVLAT
LAKRAGKALVASSAFRFVAEEKLFETVIGMLAYRVAFQWSKDTTALKKAR
LLFTLYICLYLGALLYSRQQAIELQDTRTLKVAAMPAMLSSFFDVAKKLK
KGEGMGEAGVGGLMGGLQGLASPQEKEMTFKEYDLGQVKSALDRFSMFLV
GMTFLHFKMKNTYMIMYWGCKDKEWGPVHNNGKKNKAKEAKEERMNRDKN
KLASSINWRILKT*

mRNA from alignment at scaffold_10:433769..436264+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4376 ID=mRNA_4376|Name=jgi.p|Nanoce1779_2|630249|organism=Nannochloropsis oceanica|type=mRNA|length=2496bp|location=Sequence derived from alignment at scaffold_10:433769..436264+ (Nannochloropsis oceanica)
ACAGGCACTGAAGGCTTGTGGTTTTGCCAAAATATGGGCTCCCCAAGAGG
AGGAATCGTCTCCACCGCAGGTTGCAGCACGAAGACGAACAACAGCAGTC
GACGACGGACCAGCTTCATGGTGCTGCTCCTGGTGATCGTGGGGGCCGTG
CTGACAACAACACAAGCAAGACCAGCTGCAGATGTGGGGAGCAGCAGGCC
ACCATCTTCTACAGCGGCCAGGAAACGCGCAGCATTGCTCAAGGCCACCT
CAAGTAGCAAGGTGAGTATGGGGAGATATGACGCACATTTTTGGGTGAAA
AGGATGCCAACCTGATGAGACAGGAATGCTCGAGATGATAGAGATGAGCG
CGAGCAAGCTTTCTGCCTCGGATGATTGGGTCGTCCAGCAGTTGCGTCAC
GAGCCTCGAATGCCTGGTGCAGGCATGAATGTTCGTTCTCACGCTATGGC
TCACTTCTCTTTCCACCGCTACTTGTTTCTATACTTTGTTATCCCATCTA
TGATGCCTTCAATTGCTTGTACATGTTGATAACTACTTGCTTTGGCGGGA
TCGGTGTTTCTCAGCGCTCCAGGAGGCGCGCCACACTTGCGCTTCTGACT
TCCCACCACCATCCCATTGCCTAGCTAACTCCTTTTCCCTCTCCCCCCGT
CGTATTCGCAGAAGAAGCAGCCCAAACGCGACGACGAAGATGAATCAACA
GGCTCTTCCAAGCTCGACCGCATGCCAATAGTCGCCGCTGCCGCCAAGCG
CAGCAAAAAACGTCGTTCTTCCTCCGCCTCCCTAGAAGAGGACGACCCGG
ATGTCATCCCTTTCTTGGCCAGCACTCGCGTTAAACGTGGAAGTGCCCTC
ACTTCTTCCGGTGCTGGTGGAGTATTGGCCACCCTCGCTAAGAGGGCAGG
CAAGGCATTGGTGGCTTCTTCTGCCTTTCGCTTCGTTGCAGAAGAGAAGC
TGTTTGAGACGGTCATCGGTATGCTCGCCTACCGGGTCGCATTCCAATGG
AGCAAAGACACCACGGCCTTGAAGAAGGCTCGGTTGTTATTCACGTTGTA
CATATGCTTGTATTTGGGTGCCCTGCTATATTCTAGACAGCAGGCTATCG
AGCTGCAGGACACACGAACATTGAAGGTAGCGGCCATGCCAGCCATGCTT
TCTTCCTTCTTCGACGTGGCAAAGAAGCTGAAAAAGGGCGAGGGGATGGG
AGAAGCCGGAGTCGGTGGTCTTATGGGAGGCCTGCAGGGACTGGCTTCCC
CACAAGAGAAGGAGATGACGTTTAAGGAGTATGATTTGGGACAGGTCAAG
AGCGCCCTGGACCGTTTTTCCATGTTCTTGGTGGGGATGACGTTTTTGCA
TTTCAAGATGAAGAACACGTACATGATTATGTACTGGGGGTGCGTCTGTT
TGTGTTTGTCCCTCCCTTCACCCTCCCTCCCTCCCTCCCTCCCTCTCTCT
CCCTTCCTTCCCCCATGCTCTCCTTCATCCATCCCTCTCCCTCCATCCTC
CCCTCTTGCCTTCCATGTGAGATCGGTCCGTCCTCTCACACCTCATCCTA
TTTTCCTTCCTTACTCCCCCCTTCATCTTAGAATCCTCGGGCCTATCATG
ATGCTGCGCGAGCCATTGTTTCAAGTACATATTTTTGGGATGGAGGAAAC
GGGAATAAGGCTGAGGCCATTTGGGCCGAAGGACGAGCCTGAGGAAGTGG
AGGATGGGGAGGGGGAGGAAGGTGGGGAGGAGGGGGCAGAGACGGTCAAG
GGGGAAGGAGGAGATGAGGAGGGGAGGGGGGACGAAGAGGCAGGGGAGGA
AGCGGAGCCCGGGGCAACGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGG
AAGTTGAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAGGAGGGA
GAAGAAATAGAAGAGGAAGACATAGGAGAAGAGCTAGAGGAGGAGGTGGT
TGAAGTGGAGGAGGAGGACGAGGGGGAAGAGGAGGAGAAAGAAGAAGAAG
AAGAAGAGGAAGTCCCCGTTCGAAATAAGGCGGAGGGGGGCGAAGGGAAG
GAGGGTGACATTGCGAGTGATCATGCCCTGAAGGAGCACCCGGGGCAATT
CCGGGTGAAGAAATTGGAGGAAGACGTGCATCCCCATGCGGGGGACAAGA
AGAGTGATATGACCCCGTCGGAGTTTTGTGTGGAGAAGGAGGAGTAGGGA
GAGAGGGAGGGAGGGAGGGAGGGAGGGCACAGGACGGTCTGTTTTTGTTT
TTTTAAGAAGGACAAGGAATGGGGGCCTGTGCATAACAATGGTAAGAAGA
ACAAGGCGAAGGAGGCGAAGGAGGAGAGAATGAATAGGGATAAGAACAAG
CTTGCTTCATCGATAAATTGGAGAATTTTAAAAACGTGAGGACGTGAGGG
ATGGCGAGGGAAAAATAAGAAATAACGTCTCAGCTTTGATTGCCCCACGC
AGATTAGGATCCTTCCCGCCAAAAGAAACAACGACTCGAAGAAAAG

Coding sequence (CDS) from alignment at scaffold_10:433769..436264+

>mRNA_4376 ID=mRNA_4376|Name=jgi.p|Nanoce1779_2|630249|organism=Nannochloropsis oceanica|type=CDS|length=3276bp|location=Sequence derived from alignment at scaffold_10:433769..436264+ (Nannochloropsis oceanica)
ATGGGCTCCCCAAGAGGAGGAATCGTCTCCACCGCAGGTTGCAGCACGAA
GACGAACAACAGCAGTCGACGACGGACCAGCTTCATGGTGCTGCTCCTGG
TGATCGTGGGGGCCGTGCTGACAACAACACAAGCAAGACCAGCTGCAGAT
GTGGGGAGCAGCAGGCCACCATCTTCTACAGCGGCCAGGAAACGCGCAGC
ATTGCTCAAGGCCACCTCAAGTAGCAAGAAGAAGCAGCCCAAACGCGACG
ACGAAGATGAATCAACAGGCTCTTCCAAGCTCGACCGCATGCCAATAGTC
GCCGCTGCCGCCAAGCGCAGCAAAAAACGTCGTTCTTCCTCCGCCTCCCT
AGAAGAGGACGACCCGGATGTCATCCCTTTCTTGGCCAGCACTCGCGTTA
AACGTGGAAGTGCCCTCACTTCTTCCGGTGCTGGTGGAGTATTGGCCACC
CTCGCTAAGAGGGCAGGCAAGGCATTGGTGGCTTCTTCTGCCTTTCGCTT
CGTTGCAGAAGAGAAGCTGTTTGAGACGGTCATCGGTATGCTCGCCTACC
GGGTCGCATTCCAATGGAGCAAAGACACCACGGCCTTGAAGAAGGCTCGG
TTGTTATTCACGTTGTACATATGCTTGTATTTGGGTGCCCTGCTATATTC
TAGACAGCAGGCTATCGAGCTGCAGGACACACGAACATTGAAGGTAGCGG
CCATGCCAGCCATGCTTTCTTCCTTCTTCGACGTGGCAAAGAAGCTGAAA
AAGGGCGAGGGGATGGGAGAAGCCGGAGTCGGTGGTCTTATGGGAGGCCT
GCAGGGACTGGCTTCCCCACAAGAGAAGGAGATGACGTTTAAGGAGTATG
ATTTGGGACAGGTCAAGAGCGCCCTGGACCGTTTTTCCATGTTCTTGGTG
GGGATGACGTTTTTGCATTTCAAGATGAAGAACACGTACATGATTATGTA
CTGGGGGTGCAAGGACAAGGAATGGGGGCCTGTGCATAACAATGGTAAGA
AGAACAAGGCGAAGGAGGCGAAGGAGGAGAGAATGAATAGGGATAAGAAC
AAGCTTGCTTCATCGATAAATTGGAGAATTTTAAAAACGTGAATGGGCTC
CCCAAGAGGAGGAATCGTCTCCACCGCAGGTTGCAGCACGAAGACGAACA
ACAGCAGTCGACGACGGACCAGCTTCATGGTGCTGCTCCTGGTGATCGTG
GGGGCCGTGCTGACAACAACACAAGCAAGACCAGCTGCAGATGTGGGGAG
CAGCAGGCCACCATCTTCTACAGCGGCCAGGAAACGCGCAGCATTGCTCA
AGGCCACCTCAAGTAGCAAGAAGAAGCAGCCCAAACGCGACGACGAAGAT
GAATCAACAGGCTCTTCCAAGCTCGACCGCATGCCAATAGTCGCCGCTGC
CGCCAAGCGCAGCAAAAAACGTCGTTCTTCCTCCGCCTCCCTAGAAGAGG
ACGACCCGGATGTCATCCCTTTCTTGGCCAGCACTCGCGTTAAACGTGGA
AGTGCCCTCACTTCTTCCGGTGCTGGTGGAGTATTGGCCACCCTCGCTAA
GAGGGCAGGCAAGGCATTGGTGGCTTCTTCTGCCTTTCGCTTCGTTGCAG
AAGAGAAGCTGTTTGAGACGGTCATCGGTATGCTCGCCTACCGGGTCGCA
TTCCAATGGAGCAAAGACACCACGGCCTTGAAGAAGGCTCGGTTGTTATT
CACGTTGTACATATGCTTGTATTTGGGTGCCCTGCTATATTCTAGACAGC
AGGCTATCGAGCTGCAGGACACACGAACATTGAAGGTAGCGGCCATGCCA
GCCATGCTTTCTTCCTTCTTCGACGTGGCAAAGAAGCTGAAAAAGGGCGA
GGGGATGGGAGAAGCCGGAGTCGGTGGTCTTATGGGAGGCCTGCAGGGAC
TGGCTTCCCCACAAGAGAAGGAGATGACGTTTAAGGAGTATGATTTGGGA
CAGGTCAAGAGCGCCCTGGACCGTTTTTCCATGTTCTTGGTGGGGATGAC
GTTTTTGCATTTCAAGATGAAGAACACGTACATGATTATGTACTGGGGGT
GCAAGGACAAGGAATGGGGGCCTGTGCATAACAATGGTAAGAAGAACAAG
GCGAAGGAGGCGAAGGAGGAGAGAATGAATAGGGATAAGAACAAGCTTGC
TTCATCGATAAATTGGAGAATTTTAAAAACGTGAATGGGCTCCCCAAGAG
GAGGAATCGTCTCCACCGCAGGTTGCAGCACGAAGACGAACAACAGCAGT
CGACGACGGACCAGCTTCATGGTGCTGCTCCTGGTGATCGTGGGGGCCGT
GCTGACAACAACACAAGCAAGACCAGCTGCAGATGTGGGGAGCAGCAGGC
CACCATCTTCTACAGCGGCCAGGAAACGCGCAGCATTGCTCAAGGCCACC
TCAAGTAGCAAGAAGAAGCAGCCCAAACGCGACGACGAAGATGAATCAAC
AGGCTCTTCCAAGCTCGACCGCATGCCAATAGTCGCCGCTGCCGCCAAGC
GCAGCAAAAAACGTCGTTCTTCCTCCGCCTCCCTAGAAGAGGACGACCCG
GATGTCATCCCTTTCTTGGCCAGCACTCGCGTTAAACGTGGAAGTGCCCT
CACTTCTTCCGGTGCTGGTGGAGTATTGGCCACCCTCGCTAAGAGGGCAG
GCAAGGCATTGGTGGCTTCTTCTGCCTTTCGCTTCGTTGCAGAAGAGAAG
CTGTTTGAGACGGTCATCGGTATGCTCGCCTACCGGGTCGCATTCCAATG
GAGCAAAGACACCACGGCCTTGAAGAAGGCTCGGTTGTTATTCACGTTGT
ACATATGCTTGTATTTGGGTGCCCTGCTATATTCTAGACAGCAGGCTATC
GAGCTGCAGGACACACGAACATTGAAGGTAGCGGCCATGCCAGCCATGCT
TTCTTCCTTCTTCGACGTGGCAAAGAAGCTGAAAAAGGGCGAGGGGATGG
GAGAAGCCGGAGTCGGTGGTCTTATGGGAGGCCTGCAGGGACTGGCTTCC
CCACAAGAGAAGGAGATGACGTTTAAGGAGTATGATTTGGGACAGGTCAA
GAGCGCCCTGGACCGTTTTTCCATGTTCTTGGTGGGGATGACGTTTTTGC
ATTTCAAGATGAAGAACACGTACATGATTATGTACTGGGGGTGCAAGGAC
AAGGAATGGGGGCCTGTGCATAACAATGGTAAGAAGAACAAGGCGAAGGA
GGCGAAGGAGGAGAGAATGAATAGGGATAAGAACAAGCTTGCTTCATCGA
TAAATTGGAGAATTTTAAAAACGTGA

Synonyms

Publications