jgi.p|Nanoce1779_2|589286, mRNA_4488 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|589286
Unique NamemRNA_4488
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1568
Alignment locationscaffold_10:723092..724776 -

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Properties
Property NameValue
TranscriptId589372
TrackFilteredModels2
ProteinId589286
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:723092..724776 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589286gene_4488Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589286mRNA_4488-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4488CDS_4488Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4488 ID=mRNA_4488|Name=jgi.p|Nanoce1779_2|589286|organism=Nannochloropsis oceanica|type=mRNA|length=1568bp
AGAGCTCCACACGTACCGTCTAGGGCAGCGGGGACCAAGCCCCGACCTTT
ATTCCTCGACTACGCATTCATCTTCGTTCCTGCCCGCACCGGCGTCAAGA
TGCCTACAGTGAACTGCAACTCGACGCTGCTGCTTCCACGGAGGAGAAAA
TTCCTGTACATGCGTCCACTGCTGCTCCTTGCGCTGCTCCCTTTCGCCGC
TCTTATTCTTCTTCCTGTACAGCTGGCCACGGCCTCTTTCTTGACGGGAG
CATTTCTAAGCGGACCACGGGGTTGTCTAGGTAAAAAGGTCTCGAGCCTC
CTCTCCTCTGTTCGACCTGCTGGTACCTTCCCCTCCACCGCGCTGTCCTT
CACTAAAACACCTGTGACGATTACCAACGTATGTGCCGAGACATCAAGGA
TATCAAAAGGTCAGCTACAGGGGCCACGCGGTGCGCTCTCTCATCTGGCC
CTAACCAGCTTGCCGGAGTTTGCGGCGTATTCGGCCAACGCGGGGAGAGG
GTTGTGGACTAACTCAGCACTGGCCATCCTAGGAATGGCATTGAAACAAC
GATGGTTGACCTCGTGGGGATTGTTGCATGCCTGGGTGCTTGGGGTGTCA
CTATGGACGACGCTGGGCTGGCGGGGCTGGGCCTTGTGTGTGTTCTATTT
GGTGTTTGGGTCGCTTGTCACCAAGGTGAAGCAGGCGGAGAAGGAGGCGT
TGGGCATCGCGGAGAAACGGGGCGGAGCAAGAGGACCAGAGAATGTTTGG
GGATCAGCGGCAGCGGGCACGCTGTGCGCTATCGCCACCCTCTTTCTTCC
CACCTGGATCCCCATCCTTCTCATCGGGTATGTTGCTTCGCTCGCCACCA
AGCTGTCCGACACTTTCGCAAGTGAGATTGGCAAGGCCTACGGGAAACGA
ACTTTCCTTATCACGACGCTCAAGCCCGTTCCTCCTGGCACGGAGGGCGC
CGTCAGTCTAGAAGGCACCGTGGCGGGCGTGATGGGTTCTATTCTCATGG
CTGGGGCGGGGGTAGGGTTGAAGTTGATGAGCTTGAATGCTGTCCCGCTC
GTGTTGGTGGCCGCCTTCGTGGCTACGAATGTCGAGAGCCTCCTGGGGGC
GAGTCTGCAGAATGAACGGCACCCGTGGGCGACGAACGAGTTCATCAACT
TTTTGAACACCTTGATCGGTAGTGCGGTTGGTATTGCCTTGGCGGTCTCA
TTAAGAGTGCTGGTGTGACTGACATGCATCACAGGGAGAGAATAGGAAAG
AGAGAAAGTAAGGAAATTGGGTACAAGAGGGAAGGATCGAAGTGCTTCGC
ACCACAAGCCTGGAGAAGCAAGGCAAGGAACAAGGAAGAGTACGCGAGAC
GAACTAAATAAAGAGATAGATACCAAAAACTATTTCCAATGGTCACGATG
CGTCCGAAACAACAAAGCGATGGAAAGGCTTTGGCAGTTTTCTTGGGGTT
GTTGGATGCCTGAGAGTCAAAAGAAATGGTCAGTGGGCAAGACTCCGGAG
AGTGACAAACCCAATGATACACACAGACAGACAAATTTTCAATAAAATTC
GTGTGTGCATCACGAAAA
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protein sequence of jgi.p|Nanoce1779_2|589286

>mRNA_4488-protein ID=mRNA_4488-protein|Name=jgi.p|Nanoce1779_2|589286|organism=Nannochloropsis oceanica|type=polypeptide|length=373bp
MPTVNCNSTLLLPRRRKFLYMRPLLLLALLPFAALILLPVQLATASFLTG
AFLSGPRGCLGKKVSSLLSSVRPAGTFPSTALSFTKTPVTITNVCAETSR
ISKGQLQGPRGALSHLALTSLPEFAAYSANAGRGLWTNSALAILGMALKQ
RWLTSWGLLHAWVLGVSLWTTLGWRGWALCVFYLVFGSLVTKVKQAEKEA
LGIAEKRGGARGPENVWGSAAAGTLCAIATLFLPTWIPILLIGYVASLAT
KLSDTFASEIGKAYGKRTFLITTLKPVPPGTEGAVSLEGTVAGVMGSILM
AGAGVGLKLMSLNAVPLVLVAAFVATNVESLLGASLQNERHPWATNEFIN
FLNTLIGSAVGIALAVSLRVLV*
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mRNA from alignment at scaffold_10:723092..724776-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4488 ID=mRNA_4488|Name=jgi.p|Nanoce1779_2|589286|organism=Nannochloropsis oceanica|type=mRNA|length=1685bp|location=Sequence derived from alignment at scaffold_10:723092..724776- (Nannochloropsis oceanica)
AGAGCTCCACACGTACCGTCTAGGGCAGCGGGGACCAAGCCCCGACCTTT
ATTCCTCGACTACGCATTCATCTTCGTTCCTGCCCGCACCGGCGTCAAGA
TGCCTACAGTGAACTGCAACTCGACGCTGCTGCTTCCACGGAGGAGAAAA
TTCCTGTACATGCGTCCACTGCTGCTCCTTGCGCTGCTCCCTTTCGCCGC
TCTTATTCTTCTTCCTGTACAGCTGGCCACGGCCTCTTTCTTGACGGGAG
CATTTCTAAGCGGACCACGGGGTTGTCTAGGTAAAAAGGTCTCGAGCCTC
CTCTCCTCTGTTCGACCTGCTGGTACCTTCCCCTCCACCGCGCTGTCCTT
CACTAAAACACCTGTGACGATTACCAACGTATGTGCCGAGACATCAAGGA
TATCAAAAGGTCAGCTACAGGGGCCACGCGGTGCGCTCTCTCATCTGGCC
CTAACCAGCTTGCCGGAGTTTGCGGCGTATTCGGCCAACGCGGGGAGAGG
GTTGTGGACTAACTCAGCACTGGCCATCCTAGGAATGGCATTGAAACAAC
GATGGTTGACCTCGTGGGGATTGTTGCATGCCTGGGTGCTTGGGGTGTCA
CTATGGACGACGCTGGGCTGGCGGGGCTGGGCCTTGTGTGTGTTCTATTT
GGTGTTTGGGTCGCTTGTCACCAAGGTGAAGCAGGCGGAGAAGGAGGCGT
TGGGCATCGCGGAGAAACGGGGCGGAGCAAGAGGACCAGAGAATGTTTGG
GGATCAGCGGCAGCGGTAGGTTTTGTTTTGTGTCTGGCGGGAAGATCAAG
GAGGACCTCGAGTCATATTTTGCAACCCATTCACCCAGTCACCCTGTGAA
ACATACATGTGTGTGTATGTATTTATATACAGGGCACGCTGTGCGCTATC
GCCACCCTCTTTCTTCCCACCTGGATCCCCATCCTTCTCATCGGGTATGT
TGCTTCGCTCGCCACCAAGCTGTCCGACACTTTCGCAAGTGAGATTGGCA
AGGCCTACGGGAAACGAACTTTCCTTATCACGACGCTCAAGCCCGTTCCT
CCTGGCACGGAGGGCGCCGTCAGTCTAGAAGGCACCGTGGCGGGCGTGAT
GGGTTCTATTCTCATGGCTGGGGCGGGGGTAGGGTTGAAGTTGATGAGCT
TGAATGCTGTCCCGCTCGTGTTGGTGGCCGCCTTCGTGGCTACGAATGTC
GAGAGCCTCCTGGGGGCGAGTCTGCAGAATGAACGGCACCCGTGGGCGAC
GAACGAGTTCATCAACTTTTTGAACACCTTGATCGGTAGTGCGGTTGGTA
TTGCCTTGGCGGTCTCATTAAGAGTGCTGGTGTGACTGACATGCATCACA
GGGAGAGAATAGGAAAGAGAGAAAGTAAGGAAATTGGGTACAAGAGGGAA
GGATCGAAGTGCTTCGCACCACAAGCCTGGAGAAGCAAGGCAAGGAACAA
GGAAGAGTACGCGAGACGAACTAAATAAAGAGATAGATACCAAAAACTAT
TTCCAATGGTCACGATGCGTCCGAAACAACAAAGCGATGGAAAGGCTTTG
GCAGTTTTCTTGGGGTTGTTGGATGCCTGAGAGTCAAAAGAAATGGTCAG
TGGGCAAGACTCCGGAGAGTGACAAACCCAATGATACACACAGACAGACA
AATTTTCAATAAAATTCGTGTGTGCATCACGAAAA
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Coding sequence (CDS) from alignment at scaffold_10:723092..724776-

>mRNA_4488 ID=mRNA_4488|Name=jgi.p|Nanoce1779_2|589286|organism=Nannochloropsis oceanica|type=CDS|length=2238bp|location=Sequence derived from alignment at scaffold_10:723092..724776- (Nannochloropsis oceanica)
GGCACGCTGTGCGCTATCGCCACCCTCTTTCTTCCCACCTGGATCCCCAT
CCTTCTCATCGGGTATGTTGCTTCGCTCGCCACCAAGCTGTCCGACACTT
TCGCAAGTGAGATTGGCAAGGCCTACGGGAAACGAACTTTCCTTATCACG
ACGCTCAAGCCCGTTCCTCCTGGCACGGAGGGCGCCGTCAGTCTAGAAGG
CACCGTGGCGGGCGTGATGGGTTCTATTCTCATGGCTGGGGCGGGGGTAG
GGTTGAAGTTGATGAGCTTGAATGCTGTCCCGCTCGTGTTGGTGGCCGCC
TTCGTGGCTACGAATGTCGAGAGCCTCCTGGGGGCGAGTCTGCAGAATGA
ACGGCACCCGTGGGCGACGAACGAGTTCATCAACTTTTTGAACACCTTGA
TCGGTAGTGCGGTTGGTATTGCCTTGGCGGTCTCATTAAGAGTGCTGGTG
TGAATGCCTACAGTGAACTGCAACTCGACGCTGCTGCTTCCACGGAGGAG
AAAATTCCTGTACATGCGTCCACTGCTGCTCCTTGCGCTGCTCCCTTTCG
CCGCTCTTATTCTTCTTCCTGTACAGCTGGCCACGGCCTCTTTCTTGACG
GGAGCATTTCTAAGCGGACCACGGGGTTGTCTAGGTAAAAAGGTCTCGAG
CCTCCTCTCCTCTGTTCGACCTGCTGGTACCTTCCCCTCCACCGCGCTGT
CCTTCACTAAAACACCTGTGACGATTACCAACGTATGTGCCGAGACATCA
AGGATATCAAAAGGTCAGCTACAGGGGCCACGCGGTGCGCTCTCTCATCT
GGCCCTAACCAGCTTGCCGGAGTTTGCGGCGTATTCGGCCAACGCGGGGA
GAGGGTTGTGGACTAACTCAGCACTGGCCATCCTAGGAATGGCATTGAAA
CAACGATGGTTGACCTCGTGGGGATTGTTGCATGCCTGGGTGCTTGGGGT
GTCACTATGGACGACGCTGGGCTGGCGGGGCTGGGCCTTGTGTGTGTTCT
ATTTGGTGTTTGGGTCGCTTGTCACCAAGGTGAAGCAGGCGGAGAAGGAG
GCGTTGGGCATCGCGGAGAAACGGGGCGGAGCAAGAGGACCAGAGAATGT
TTGGGGATCAGCGGCAGCGGGCACGCTGTGCGCTATCGCCACCCTCTTTC
TTCCCACCTGGATCCCCATCCTTCTCATCGGGTATGTTGCTTCGCTCGCC
ACCAAGCTGTCCGACACTTTCGCAAGTGAGATTGGCAAGGCCTACGGGAA
ACGAACTTTCCTTATCACGACGCTCAAGCCCGTTCCTCCTGGCACGGAGG
GCGCCGTCAGTCTAGAAGGCACCGTGGCGGGCGTGATGGGTTCTATTCTC
ATGGCTGGGGCGGGGGTAGGGTTGAAGTTGATGAGCTTGAATGCTGTCCC
GCTCGTGTTGGTGGCCGCCTTCGTGGCTACGAATGTCGAGAGCCTCCTGG
GGGCGAGTCTGCAGAATGAACGGCACCCGTGGGCGACGAACGAGTTCATC
AACTTTTTGAACACCTTGATCGGTAGTGCGGTTGGTATTGCCTTGGCGGT
CTCATTAAGAGTGCTGGTGTGAATGCCTACAGTGAACTGCAACTCGACGC
TGCTGCTTCCACGGAGGAGAAAATTCCTGTACATGCGTCCACTGCTGCTC
CTTGCGCTGCTCCCTTTCGCCGCTCTTATTCTTCTTCCTGTACAGCTGGC
CACGGCCTCTTTCTTGACGGGAGCATTTCTAAGCGGACCACGGGGTTGTC
TAGGTAAAAAGGTCTCGAGCCTCCTCTCCTCTGTTCGACCTGCTGGTACC
TTCCCCTCCACCGCGCTGTCCTTCACTAAAACACCTGTGACGATTACCAA
CGTATGTGCCGAGACATCAAGGATATCAAAAGGTCAGCTACAGGGGCCAC
GCGGTGCGCTCTCTCATCTGGCCCTAACCAGCTTGCCGGAGTTTGCGGCG
TATTCGGCCAACGCGGGGAGAGGGTTGTGGACTAACTCAGCACTGGCCAT
CCTAGGAATGGCATTGAAACAACGATGGTTGACCTCGTGGGGATTGTTGC
ATGCCTGGGTGCTTGGGGTGTCACTATGGACGACGCTGGGCTGGCGGGGC
TGGGCCTTGTGTGTGTTCTATTTGGTGTTTGGGTCGCTTGTCACCAAGGT
GAAGCAGGCGGAGAAGGAGGCGTTGGGCATCGCGGAGAAACGGGGCGGAG
CAAGAGGACCAGAGAATGTTTGGGGATCAGCGGCAGCG
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Synonyms
Publications