jgi.p|Nanoce1779_2|589540, mRNA_4549 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|589540
Unique NamemRNA_4549
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length745
Alignment locationscaffold_10:905850..906594 +

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Properties
Property NameValue
TranscriptId589626
TrackFilteredModels2
ProteinId589540
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:905850..906594 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589540gene_4549Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589540mRNA_4549-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4549CDS_4549Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4549 ID=mRNA_4549|Name=jgi.p|Nanoce1779_2|589540|organism=Nannochloropsis oceanica|type=mRNA|length=745bp
ACAGGCGAACAGTGCATGTCAGCCTCATCCACCTCGCCCGCCACTGCACG
CCTCGCCTCTCTCGCCGCACACCTTTCTCCTTCTTCTTCGTCTGTTACTA
CCAGTACTACAGCAACTATGAGCACTGCCCCCAAAAAGCGTTGCCCAATT
ACCTCCCACATCCTTGACACCACCCTTGGCAAACCCGCCCAAGGCGTCGC
CTTGCACCTCGAGCAAAAAAAAGCAGGACAAGGAGACACCGCTTCCTCTC
AATGGGTTGTGCTAGGGCATGGTCACACAAACGCTGATGGGCGGGTGGAG
ACTTTATTACCCACCAGCCATGTCTTGCAGTCGGGTGTGTATCGCATCAC
CTTCGACGTGGCCGCGTATTTCCGTGCGAGCAACACCAAGGCTTTTTACC
CCGAGGTGACAATTGTATTTGAGGTGGAGAGGCCTGAAGAACATTATCAT
GTGCCCTTATTAATCAACCCGTATGCGTACTCCACGTATCGGGGGAGTTA
GGAAAAATAAGAGGGGGAGAAGAAGGATATAGGAAAGCGACAGGGTGAGG
GTACATATATAGGATTTATTTGAGTAGGGGAAGAAGAGTGAGGGTGTACA
GAAGCACATCACACTTGAAGTGTGGCGAGAAAAGTATGGAAGAGACAGAA
ATAATACAGGAGGTTGCACGAGTTCAGAGGAACCGATACAAAGGGCTTAG
GGTAAGGGCAAGGGCGAGCTAAAAAAAATATTACGTGTCAAGTTT
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protein sequence of jgi.p|Nanoce1779_2|589540

>mRNA_4549-protein ID=mRNA_4549-protein|Name=jgi.p|Nanoce1779_2|589540|organism=Nannochloropsis oceanica|type=polypeptide|length=162bp
MSASSTSPATARLASLAAHLSPSSSSVTTSTTATMSTAPKKRCPITSHIL
DTTLGKPAQGVALHLEQKKAGQGDTASSQWVVLGHGHTNADGRVETLLPT
SHVLQSGVYRITFDVAAYFRASNTKAFYPEVTIVFEVERPEEHYHVPLLI
NPYAYSTYRGS*
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mRNA from alignment at scaffold_10:905850..906594+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4549 ID=mRNA_4549|Name=jgi.p|Nanoce1779_2|589540|organism=Nannochloropsis oceanica|type=mRNA|length=745bp|location=Sequence derived from alignment at scaffold_10:905850..906594+ (Nannochloropsis oceanica)
ACAGGCGAACAGTGCATGTCAGCCTCATCCACCTCGCCCGCCACTGCACG
CCTCGCCTCTCTCGCCGCACACCTTTCTCCTTCTTCTTCGTCTGTTACTA
CCAGTACTACAGCAACTATGAGCACTGCCCCCAAAAAGCGTTGCCCAATT
ACCTCCCACATCCTTGACACCACCCTTGGCAAACCCGCCCAAGGCGTCGC
CTTGCACCTCGAGCAAAAAAAAGCAGGACAAGGAGACACCGCTTCCTCTC
AATGGGTTGTGCTAGGGCATGGTCACACAAACGCTGATGGGCGGGTGGAG
ACTTTATTACCCACCAGCCATGTCTTGCAGTCGGGTGTGTATCGCATCAC
CTTCGACGTGGCCGCGTATTTCCGTGCGAGCAACACCAAGGCTTTTTACC
CCGAGGTGACAATTGTATTTGAGGTGGAGAGGCCTGAAGAACATTATCAT
GTGCCCTTATTAATCAACCCGTATGCGTACTCCACGTATCGGGGGAGTTA
GGAAAAATAAGAGGGGGAGAAGAAGGATATAGGAAAGCGACAGGGTGAGG
GTACATATATAGGATTTATTTGAGTAGGGGAAGAAGAGTGAGGGTGTACA
GAAGCACATCACACTTGAAGTGTGGCGAGAAAAGTATGGAAGAGACAGAA
ATAATACAGGAGGTTGCACGAGTTCAGAGGAACCGATACAAAGGGCTTAG
GGTAAGGGCAAGGGCGAGCTAAAAAAAATATTACGTGTCAAGTTT
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Coding sequence (CDS) from alignment at scaffold_10:905850..906594+

>mRNA_4549 ID=mRNA_4549|Name=jgi.p|Nanoce1779_2|589540|organism=Nannochloropsis oceanica|type=CDS|length=486bp|location=Sequence derived from alignment at scaffold_10:905850..906594+ (Nannochloropsis oceanica)
ATGTCAGCCTCATCCACCTCGCCCGCCACTGCACGCCTCGCCTCTCTCGC
CGCACACCTTTCTCCTTCTTCTTCGTCTGTTACTACCAGTACTACAGCAA
CTATGAGCACTGCCCCCAAAAAGCGTTGCCCAATTACCTCCCACATCCTT
GACACCACCCTTGGCAAACCCGCCCAAGGCGTCGCCTTGCACCTCGAGCA
AAAAAAAGCAGGACAAGGAGACACCGCTTCCTCTCAATGGGTTGTGCTAG
GGCATGGTCACACAAACGCTGATGGGCGGGTGGAGACTTTATTACCCACC
AGCCATGTCTTGCAGTCGGGTGTGTATCGCATCACCTTCGACGTGGCCGC
GTATTTCCGTGCGAGCAACACCAAGGCTTTTTACCCCGAGGTGACAATTG
TATTTGAGGTGGAGAGGCCTGAAGAACATTATCATGTGCCCTTATTAATC
AACCCGTATGCGTACTCCACGTATCGGGGGAGTTAG
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Synonyms
Publications