Properties
| Property Name | Value |
|---|
| TranscriptId | 589687 |
| Track | FilteredModels2 |
| ProteinId | 589601 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_11 | supercontig | scaffold_11:3334..5802 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5585 ID=mRNA_5585|Name=jgi.p|Nanoce1779_2|589601|organism=Nannochloropsis oceanica|type=mRNA|length=1548bp
TGGGCCTGTCGTTGGAGGAGGTGGGCGGGCTCTTGACGACGGTGGGAAAG
GCGTATCTGAAGAGGGGAGACACGGTGGGCGCAACTCGGATGGTGGGGGG
GATGGTAGGATGGGGGGTGAAGCCGATGATGGAAGTGTGCAACGACCTCT
TGCGGCAGCAGGGGAAGCAGGGGCGGGTGGAGGGAATGTTTCACACGCTG
GACCTGATGAGGGAGGGCGGGTTGCACCCGGACGCCGACTCGTACAACCA
CGTGGGGAATACTCTTGTTAAGTCCGTGGAATTCGTGGCCGGGGCGGTGA
GCATGGACACGCTGCCGGGGAGGGTATTGCCCGAGGTCTGCTTCATCGGT
CGGTCCAACGTCGGAAAGTCCAGCCTCTTGAACATGGTGTGCAACCGCAA
AGACCTCGCCTACGTCTCTAAACGCCCGGGTAAGACCCAGCAGTTTAATT
ACTTCCTCGTGAACGACAAGACCAAAAACAGCTTCTACATGGTCGATATC
CCCGGCATTGGTTATGCCAAGGTCCCCCTTACCGAGAAGAGCAAGTGGGC
TGCCTTCTTCGAGGCCTACCTCGCCCGCCGTCCCTCCCTCCGTGTCGTTT
TCCACCTCATCGACGCCCGCCACGGCCCCCTCGCTCAGGATGTGGCCACT
ATGCAAGCCATGCGAACCTCTCTCCGACCAGGCGTGCAGTACGTGGTCAT
CCTGACCAAGGCCGACAAGAAGGACGGTAAGGTCTCCCCTCTCCTCCAAC
AGCAAGTGGCCGACGCGCTCGACTCGTTTGATTTGAAGGAAACGACGCCG
GTGATTGCCACTAGTGCAGTCAACAGGCTGGGCCGGGATGAGGTGTGGAG
GTACCTCCGTCTGGCTGTCATCAAGGAGGGGAATTAAGGAGGGAGGAGGG
AACAAGAGGACGTTCCATTTCAATTTTTTCTACAAGGCGCGGAGCCGTTG
TTACGGGAAAAGCTGCCGTATATTCTCCGAACATCGCAGTGATTGACAAA
TTGATTCCCTTTCCGCAAAAGAAGGTGGAATGGCAAAACAAAATATGGCG
TGACTCCGACTCAAAAAAGAACTAAGAACAATGTCATGTACATGTAAGGT
TTGATTTAAGCTGCTTCAACGGTTGCCGATGGTATGTCTTGCGAGAGGGG
GAAGGCAAAGAGGAAAAGAGGAGCTCAAGGGCAACATCTTTTTGGCTTTC
TGTTTTTGATGAACACCTAGGGGGCCTGAATACGACCATTTACAGGCTCG
GAAGTATATCCGTCCTCGAAAGATTCGCCCCCACAGCTTTGACGTGATTT
TTGACGGAGAACTGCAGAAATCAGATCGCGTCGACAGGTCTTGTCTTCTT
TGTTTAGAATGTAACCCAAGGGGCTGTATCGACGCTTGCGGGGACCTTGA
AACATCCTCTTTCCATTGTTACTTGTCTCCCAACATTATGTGGTGGTCGT
CGTTCCGCTCCTCCCCCAATGAGGGGTCGGAACGCTGAGGGGGCGTTTGT
CTCAAGGGCCTTCTCTCGAGGCTTCCCACAATATCACCACGAATAACC back to topprotein sequence of jgi.p|Nanoce1779_2|589601 >mRNA_5585-protein ID=mRNA_5585-protein|Name=jgi.p|Nanoce1779_2|589601|organism=Nannochloropsis oceanica|type=polypeptide|length=266bp
MVGGMVGWGVKPMMEVCNDLLRQQGKQGRVEGMFHTLDLMREGGLHPDAD
SYNHVGNTLVKSVEFVAGAVSMDTLPGRVLPEVCFIGRSNVGKSSLLNMV
CNRKDLAYVSKRPGKTQQFNYFLVNDKTKNSFYMVDIPGIGYAKVPLTEK
SKWAAFFEAYLARRPSLRVVFHLIDARHGPLAQDVATMQAMRTSLRPGVQ
YVVILTKADKKDGKVSPLLQQQVADALDSFDLKETTPVIATSAVNRLGRD
EVWRYLRLAVIKEGN* back to topmRNA from alignment at scaffold_11:3334..5802- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5585 ID=mRNA_5585|Name=jgi.p|Nanoce1779_2|589601|organism=Nannochloropsis oceanica|type=mRNA|length=2469bp|location=Sequence derived from alignment at scaffold_11:3334..5802- (Nannochloropsis oceanica)
TGGGCCTGTCGTTGGAGGAGGTGGGCGGGCTCTTGACGACGGTGGGAAAG
GCGTATCTGAAGAGGGGAGACACGGTGGGCGCAACTCGGATGGTGGGGGG
GATGGTAGGATGGGGGGTGAAGCCGATGATGGAAGTGTGCAACGACCTCT
TGCGGCAGCAGGGGAAGCAGGGGCGGGTGGAGGGAATGTTTCACACGCTG
GACCTGATGAGGGAGGGCGGGTTGCACCCGGACGCCGACTCGTACAACCA
CGTGGGGAATACTCTTGTTAAGTCCGTGGAATTCGTGGCCGGGGCGGTGA
GCATGGACACGCTGCCGGGGAGGGTATTGCCCGAGGTAGGGAGGGAGGGC
GGGGGGGGAGGGAGGGGGAAGCGTCTCGTTCAATCAGTCTTATATTCTAT
CCTTGCTTCAATTCCTTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTAGGT
CTGCTTCATCGGTCGGTCCAACGTCGGAAAGTCCAGCCTCTTGAACATGG
TACGTCCGTCATCAGCACCACAACCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTTCCTTCCTTCCTTCCTCCCTCTCTTCCTTCCTT
CCTTCCTCCCTCCCTTCCTCTTTCTCTTCCTTCCTTCCTCCCTCTCTTCC
TTCCTCCCTCCTTCCCTTCCTTCCTCCCTCTTCCTCCCTCCCTCTCTTCC
ATCCTCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCCCTCCCTCC
CTTCCCCCCTCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTTCCTCT
CTCTCTCTCCCTTCCTTCCTCTCTCATTCCCTCTCTCTCTCCCTTCCTTC
CTCTCTCATTCCCTCCCTCTCTTCCTTCCCTTCCTTTCCCCCTCATTGCT
TCTCTTTCTTTCTTCCTTCCCCCCTTCCTCCCTTCCTCCCTTCCTCCGTC
TCTCCCTCCCTCCCTTCCATCCCCCCCTCCTTAGGTGTGCAACCGCAAAG
ACCTCGCCTACGTCTCTAAACGCCCGGGTAAGACCCAGCAGTTTAATTAC
TTCCTCGTGAACGACAAGACCAAAAACAGCTTCTACATGGTCGATATCCC
CGGCATTGGTTATGCCAAGGTAAGTGATGAGGGGGGAGGCGAGGGAGGGA
GGGAGGGAGGGAGAGAAGGAGAAAAAGCCCTTTCCTCCACTACATGCACC
TGTCTCCGCTCACTCTCCATTCCCTCCCTCCTTCCCTCCCTCCCTCCCTC
CTTCCCTCCCTCCCCCCTCCTCTAGGTCCCCCTTACCGAGAAGAGCAAGT
GGGCTGCCTTCTTCGAGGCCTACCTCGCCCGCCGTCCCTCCCTCCGTGTC
GTTTTCCACCTCATCGACGCCCGCCACGGCCCCCTCGCTCAGGATGTGGC
CACTATGCAAGCCATGCGAACCTCTCTCCGACCAGGTACAAGCACTCCTT
CCCTCCCTCCCTCCTGCCCTCCATGACTGCCTCGCGTATGGCCCCGAGTC
GAATTGCTTCCATCGATTTCCTTCCCTTCGAACTCACCATGAGCCCACAG
CACGAGCCACCCCCTCCCTCCTCTTCTCTTTCCTTCCCTCCCTCTCTTAC
AGGCGTGCAGTACGTGGTCATCCTGACCAAGGCCGACAAGAAGGACGGTA
AGGTCTCCCCTCTCCTCCAACAGCAAGTGGCCGACGCGCTCGACTCGTTT
GATTTGAAGGAAACGACGCCGGTGATTGCCACTAGTGCAGTCAACAGGCT
GGGCCGGGATGAGGTGTGGAGGTACCTCCGTCTGGCTGTCATCAAGGAGG
GGAATTAAGGAGGGAGGAGGGAACAAGAGGACGTTCCATTTCAATTTTTT
CTACAAGGCGCGGAGCCGTTGTTACGGGAAAAGCTGCCGTATATTCTCCG
AACATCGCAGTGATTGACAAATTGATTCCCTTTCCGCAAAAGAAGGTGGA
ATGGCAAAACAAAATATGGCGTGACTCCGACTCAAAAAAGAACTAAGAAC
AATGTCATGTACATGTAAGGTTTGATTTAAGCTGCTTCAACGGTTGCCGA
TGGTATGTCTTGCGAGAGGGGGAAGGCAAAGAGGAAAAGAGGAGCTCAAG
GGCAACATCTTTTTGGCTTTCTGTTTTTGATGAACACCTAGGGGGCCTGA
ATACGACCATTTACAGGCTCGGAAGTATATCCGTCCTCGAAAGATTCGCC
CCCACAGCTTTGACGTGATTTTTGACGGAGAACTGCAGAAATCAGATCGC
GTCGACAGGTCTTGTCTTCTTTGTTTAGAATGTAACCCAAGGGGCTGTAT
CGACGCTTGCGGGGACCTTGAAACATCCTCTTTCCATTGTTACTTGTCTC
CCAACATTATGTGGTGGTCGTCGTTCCGCTCCTCCCCCAATGAGGGGTCG
GAACGCTGAGGGGGCGTTTGTCTCAAGGGCCTTCTCTCGAGGCTTCCCAC
AATATCACCACGAATAACC back to topCoding sequence (CDS) from alignment at scaffold_11:3334..5802- >mRNA_5585 ID=mRNA_5585|Name=jgi.p|Nanoce1779_2|589601|organism=Nannochloropsis oceanica|type=CDS|length=3990bp|location=Sequence derived from alignment at scaffold_11:3334..5802- (Nannochloropsis oceanica)
GCGTGCAGTACGTGGTCATCCTGACCAAGGCCGACAAGAAGGACGGTAAG
GTCTCCCCTCTCCTCCAACAGCAAGTGGCCGACGCGCTCGACTCGTTTGA
TTTGAAGGAAACGACGCCGGTGATTGCCACTAGTGCAGTCAACAGGCTGG
GCCGGGATGAGGTGTGGAGGTACCTCCGTCTGGCTGTCATCAAGGAGGGG
AATTAAGTCCCCCTTACCGAGAAGAGCAAGTGGGCTGCCTTCTTCGAGGC
CTACCTCGCCCGCCGTCCCTCCCTCCGTGTCGTTTTCCACCTCATCGACG
CCCGCCACGGCCCCCTCGCTCAGGATGTGGCCACTATGCAAGCCATGCGA
ACCTCTCTCCGACCAGGTGTGCAACCGCAAAGACCTCGCCTACGTCTCTA
AACGCCCGGGTAAGACCCAGCAGTTTAATTACTTCCTCGTGAACGACAAG
ACCAAAAACAGCTTCTACATGGTCGATATCCCCGGCATTGGTTATGCCAA
GGTCTGCTTCATCGGTCGGTCCAACGTCGGAAAGTCCAGCCTCTTGAACA
TGATGGTGGGGGGGATGGTAGGATGGGGGGTGAAGCCGATGATGGAAGTG
TGCAACGACCTCTTGCGGCAGCAGGGGAAGCAGGGGCGGGTGGAGGGAAT
GTTTCACACGCTGGACCTGATGAGGGAGGGCGGGTTGCACCCGGACGCCG
ACTCGTACAACCACGTGGGGAATACTCTTGTTAAGTCCGTGGAATTCGTG
GCCGGGGCGGTGAGCATGGACACGCTGCCGGGGAGGGTATTGCCCGAGGC
GTGCAGTACGTGGTCATCCTGACCAAGGCCGACAAGAAGGACGGTAAGGT
CTCCCCTCTCCTCCAACAGCAAGTGGCCGACGCGCTCGACTCGTTTGATT
TGAAGGAAACGACGCCGGTGATTGCCACTAGTGCAGTCAACAGGCTGGGC
CGGGATGAGGTGTGGAGGTACCTCCGTCTGGCTGTCATCAAGGAGGGGAA
TTAAGTCCCCCTTACCGAGAAGAGCAAGTGGGCTGCCTTCTTCGAGGCCT
ACCTCGCCCGCCGTCCCTCCCTCCGTGTCGTTTTCCACCTCATCGACGCC
CGCCACGGCCCCCTCGCTCAGGATGTGGCCACTATGCAAGCCATGCGAAC
CTCTCTCCGACCAGGTGTGCAACCGCAAAGACCTCGCCTACGTCTCTAAA
CGCCCGGGTAAGACCCAGCAGTTTAATTACTTCCTCGTGAACGACAAGAC
CAAAAACAGCTTCTACATGGTCGATATCCCCGGCATTGGTTATGCCAAGG
TCTGCTTCATCGGTCGGTCCAACGTCGGAAAGTCCAGCCTCTTGAACATG
ATGGTGGGGGGGATGGTAGGATGGGGGGTGAAGCCGATGATGGAAGTGTG
CAACGACCTCTTGCGGCAGCAGGGGAAGCAGGGGCGGGTGGAGGGAATGT
TTCACACGCTGGACCTGATGAGGGAGGGCGGGTTGCACCCGGACGCCGAC
TCGTACAACCACGTGGGGAATACTCTTGTTAAGTCCGTGGAATTCGTGGC
CGGGGCGGTGAGCATGGACACGCTGCCGGGGAGGGTATTGCCCGAGGCGT
GCAGTACGTGGTCATCCTGACCAAGGCCGACAAGAAGGACGGTAAGGTCT
CCCCTCTCCTCCAACAGCAAGTGGCCGACGCGCTCGACTCGTTTGATTTG
AAGGAAACGACGCCGGTGATTGCCACTAGTGCAGTCAACAGGCTGGGCCG
GGATGAGGTGTGGAGGTACCTCCGTCTGGCTGTCATCAAGGAGGGGAATT
AAGTCCCCCTTACCGAGAAGAGCAAGTGGGCTGCCTTCTTCGAGGCCTAC
CTCGCCCGCCGTCCCTCCCTCCGTGTCGTTTTCCACCTCATCGACGCCCG
CCACGGCCCCCTCGCTCAGGATGTGGCCACTATGCAAGCCATGCGAACCT
CTCTCCGACCAGGTGTGCAACCGCAAAGACCTCGCCTACGTCTCTAAACG
CCCGGGTAAGACCCAGCAGTTTAATTACTTCCTCGTGAACGACAAGACCA
AAAACAGCTTCTACATGGTCGATATCCCCGGCATTGGTTATGCCAAGGTC
TGCTTCATCGGTCGGTCCAACGTCGGAAAGTCCAGCCTCTTGAACATGAT
GGTGGGGGGGATGGTAGGATGGGGGGTGAAGCCGATGATGGAAGTGTGCA
ACGACCTCTTGCGGCAGCAGGGGAAGCAGGGGCGGGTGGAGGGAATGTTT
CACACGCTGGACCTGATGAGGGAGGGCGGGTTGCACCCGGACGCCGACTC
GTACAACCACGTGGGGAATACTCTTGTTAAGTCCGTGGAATTCGTGGCCG
GGGCGGTGAGCATGGACACGCTGCCGGGGAGGGTATTGCCCGAGGCGTGC
AGTACGTGGTCATCCTGACCAAGGCCGACAAGAAGGACGGTAAGGTCTCC
CCTCTCCTCCAACAGCAAGTGGCCGACGCGCTCGACTCGTTTGATTTGAA
GGAAACGACGCCGGTGATTGCCACTAGTGCAGTCAACAGGCTGGGCCGGG
ATGAGGTGTGGAGGTACCTCCGTCTGGCTGTCATCAAGGAGGGGAATTAA
GTCCCCCTTACCGAGAAGAGCAAGTGGGCTGCCTTCTTCGAGGCCTACCT
CGCCCGCCGTCCCTCCCTCCGTGTCGTTTTCCACCTCATCGACGCCCGCC
ACGGCCCCCTCGCTCAGGATGTGGCCACTATGCAAGCCATGCGAACCTCT
CTCCGACCAGGTGTGCAACCGCAAAGACCTCGCCTACGTCTCTAAACGCC
CGGGTAAGACCCAGCAGTTTAATTACTTCCTCGTGAACGACAAGACCAAA
AACAGCTTCTACATGGTCGATATCCCCGGCATTGGTTATGCCAAGGTCTG
CTTCATCGGTCGGTCCAACGTCGGAAAGTCCAGCCTCTTGAACATGATGG
TGGGGGGGATGGTAGGATGGGGGGTGAAGCCGATGATGGAAGTGTGCAAC
GACCTCTTGCGGCAGCAGGGGAAGCAGGGGCGGGTGGAGGGAATGTTTCA
CACGCTGGACCTGATGAGGGAGGGCGGGTTGCACCCGGACGCCGACTCGT
ACAACCACGTGGGGAATACTCTTGTTAAGTCCGTGGAATTCGTGGCCGGG
GCGGTGAGCATGGACACGCTGCCGGGGAGGGTATTGCCCGAGGCGTGCAG
TACGTGGTCATCCTGACCAAGGCCGACAAGAAGGACGGTAAGGTCTCCCC
TCTCCTCCAACAGCAAGTGGCCGACGCGCTCGACTCGTTTGATTTGAAGG
AAACGACGCCGGTGATTGCCACTAGTGCAGTCAACAGGCTGGGCCGGGAT
GAGGTGTGGAGGTACCTCCGTCTGGCTGTCATCAAGGAGGGGAATTAAGT
CCCCCTTACCGAGAAGAGCAAGTGGGCTGCCTTCTTCGAGGCCTACCTCG
CCCGCCGTCCCTCCCTCCGTGTCGTTTTCCACCTCATCGACGCCCGCCAC
GGCCCCCTCGCTCAGGATGTGGCCACTATGCAAGCCATGCGAACCTCTCT
CCGACCAGGTGTGCAACCGCAAAGACCTCGCCTACGTCTCTAAACGCCCG
GGTAAGACCCAGCAGTTTAATTACTTCCTCGTGAACGACAAGACCAAAAA
CAGCTTCTACATGGTCGATATCCCCGGCATTGGTTATGCCAAGGTCTGCT
TCATCGGTCGGTCCAACGTCGGAAAGTCCAGCCTCTTGAACATGATGGTG
GGGGGGATGGTAGGATGGGGGGTGAAGCCGATGATGGAAGTGTGCAACGA
CCTCTTGCGGCAGCAGGGGAAGCAGGGGCGGGTGGAGGGAATGTTTCACA
CGCTGGACCTGATGAGGGAGGGCGGGTTGCACCCGGACGCCGACTCGTAC
AACCACGTGGGGAATACTCTTGTTAAGTCCGTGGAATTCGTGGCCGGGGC
GGTGAGCATGGACACGCTGCCGGGGAGGGTATTGCCCGAG back to top
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