jgi.p|Nanoce1779_2|528557, mRNA_5672 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|528557
Unique NamemRNA_5672
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length270
Alignment locationscaffold_11:287298..287567 +

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Properties
Property NameValue
TranscriptId528643
TrackFilteredModels2
ProteinId528557
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:287298..287567 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|528557gene_5672Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|528557mRNA_5672-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5672CDS_5672Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5672 ID=mRNA_5672|Name=jgi.p|Nanoce1779_2|528557|organism=Nannochloropsis oceanica|type=mRNA|length=270bp
GTCAAGGACCCCGCACGCCTTGAAAGCGAGATTCTTCCTAAATATTTCCG
TCACTCCCGCTTTCAATCCCTGGTCCGTCAACTCAACTTTTACGACTTTA
AGAAGATCAGGTATGCCTTCCATTTCCTTCTTCCTTCCTTTCCTTCCTCC
CTGCCCCGCTCCCTCCTCCTTCCCTCCTCCCTGCCCCGCTCCCTCCTTCC
CTCCCTTCCTCCCTCTCTCCCTAACACAACGTATCGGAGCCCTTTTGCAT
GCGCCAGTGAATGGCACTAA
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protein sequence of jgi.p|Nanoce1779_2|528557

>mRNA_5672-protein ID=mRNA_5672-protein|Name=jgi.p|Nanoce1779_2|528557|organism=Nannochloropsis oceanica|type=polypeptide|length=90bp
VKDPARLESEILPKYFRHSRFQSLVRQLNFYDFKKIRYAFHFLLPSFPSS
LPRSLLLPSSLPRSLLPSLPPSLPNTTYRSPFACASEWH*
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mRNA from alignment at scaffold_11:287298..287567+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5672 ID=mRNA_5672|Name=jgi.p|Nanoce1779_2|528557|organism=Nannochloropsis oceanica|type=mRNA|length=270bp|location=Sequence derived from alignment at scaffold_11:287298..287567+ (Nannochloropsis oceanica)
GTCAAGGACCCCGCACGCCTTGAAAGCGAGATTCTTCCTAAATATTTCCG
TCACTCCCGCTTTCAATCCCTGGTCCGTCAACTCAACTTTTACGACTTTA
AGAAGATCAGGTATGCCTTCCATTTCCTTCTTCCTTCCTTTCCTTCCTCC
CTGCCCCGCTCCCTCCTCCTTCCCTCCTCCCTGCCCCGCTCCCTCCTTCC
CTCCCTTCCTCCCTCTCTCCCTAACACAACGTATCGGAGCCCTTTTGCAT
GCGCCAGTGAATGGCACTAA
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Coding sequence (CDS) from alignment at scaffold_11:287298..287567+

>mRNA_5672 ID=mRNA_5672|Name=jgi.p|Nanoce1779_2|528557|organism=Nannochloropsis oceanica|type=CDS|length=270bp|location=Sequence derived from alignment at scaffold_11:287298..287567+ (Nannochloropsis oceanica)
GTCAAGGACCCCGCACGCCTTGAAAGCGAGATTCTTCCTAAATATTTCCG
TCACTCCCGCTTTCAATCCCTGGTCCGTCAACTCAACTTTTACGACTTTA
AGAAGATCAGGTATGCCTTCCATTTCCTTCTTCCTTCCTTTCCTTCCTCC
CTGCCCCGCTCCCTCCTCCTTCCCTCCTCCCTGCCCCGCTCCCTCCTTCC
CTCCCTTCCTCCCTCTCTCCCTAACACAACGTATCGGAGCCCTTTTGCAT
GCGCCAGTGAATGGCACTAA
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Synonyms
Publications