jgi.p|Nanoce1779_2|589696, mRNA_5603 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|589696
Unique NamemRNA_5603
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length619
Alignment locationscaffold_11:88820..89438 +

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Properties
Property NameValue
TranscriptId589782
TrackFilteredModels2
ProteinId589696
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:88820..89438 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589696gene_5603Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589696mRNA_5603-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5603CDS_5603Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5603 ID=mRNA_5603|Name=jgi.p|Nanoce1779_2|589696|organism=Nannochloropsis oceanica|type=mRNA|length=619bp
GAGGGAGGGAGGGAAGGTGGGGGTGTGAAGATTGCTACTCGTTGCTACTT
TTTCTATTCTCTTGACTAATACCTTCTCTCTCCCTCTTCTCTTCTCGACT
TTCTTCTCCGCCTCTCTCCTCCTACTCCCCCTATTCCCTCGTCGTCGTCG
TCTTCCTTTCTCTTGAACACCAGTACGGAGCAGGCGCCGGCTTGGGCGGC
GCGGGGGGCTACGGCGGCTACGCAGGCGCAGGAGCTGGTGGGGTGAGTAA
TATGGGTTATGGTTGTTGTAATATGGGTGATGATTATTGTAAGATGGATT
GTTCTGGGGTGGGAGTTGATGGCCCGGGGGCGTCACGGCATGGATGAGGG
TGGGAGTGGGGGAGGACATGGATGTGCGTGTGGGGGAGGGGTTTGCGATG
TCGTACTAGTGTTCGTGTCTGCCCCTGTGTTTGTATCTGTGTCTACCTAT
TTTTCTGTGTAGGTGTATGTGTATCTCAGAATCTGAGTCTGACTTTATGT
GTACGTGTGGGTGGGTGTGAGTGTCTAGATGGGTGTGGAGGGATTTCTTC
CCTTTTCTCGGTTTCCCCGTAACCTTCACCTTCAAGTACCTCCCCGCATT
CCCTCCCCCTCTCACCTCC
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protein sequence of jgi.p|Nanoce1779_2|589696

>mRNA_5603-protein ID=mRNA_5603-protein|Name=jgi.p|Nanoce1779_2|589696|organism=Nannochloropsis oceanica|type=polypeptide|length=68bp
MVVVIWVMIIVRWIVLGWELMARGRHGMDEGGSGGGHGCACGGGVCDVVL
VFVSAPVFVSVSTYFSV*
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mRNA from alignment at scaffold_11:88820..89438+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5603 ID=mRNA_5603|Name=jgi.p|Nanoce1779_2|589696|organism=Nannochloropsis oceanica|type=mRNA|length=619bp|location=Sequence derived from alignment at scaffold_11:88820..89438+ (Nannochloropsis oceanica)
GAGGGAGGGAGGGAAGGTGGGGGTGTGAAGATTGCTACTCGTTGCTACTT
TTTCTATTCTCTTGACTAATACCTTCTCTCTCCCTCTTCTCTTCTCGACT
TTCTTCTCCGCCTCTCTCCTCCTACTCCCCCTATTCCCTCGTCGTCGTCG
TCTTCCTTTCTCTTGAACACCAGTACGGAGCAGGCGCCGGCTTGGGCGGC
GCGGGGGGCTACGGCGGCTACGCAGGCGCAGGAGCTGGTGGGGTGAGTAA
TATGGGTTATGGTTGTTGTAATATGGGTGATGATTATTGTAAGATGGATT
GTTCTGGGGTGGGAGTTGATGGCCCGGGGGCGTCACGGCATGGATGAGGG
TGGGAGTGGGGGAGGACATGGATGTGCGTGTGGGGGAGGGGTTTGCGATG
TCGTACTAGTGTTCGTGTCTGCCCCTGTGTTTGTATCTGTGTCTACCTAT
TTTTCTGTGTAGGTGTATGTGTATCTCAGAATCTGAGTCTGACTTTATGT
GTACGTGTGGGTGGGTGTGAGTGTCTAGATGGGTGTGGAGGGATTTCTTC
CCTTTTCTCGGTTTCCCCGTAACCTTCACCTTCAAGTACCTCCCCGCATT
CCCTCCCCCTCTCACCTCC
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Coding sequence (CDS) from alignment at scaffold_11:88820..89438+

>mRNA_5603 ID=mRNA_5603|Name=jgi.p|Nanoce1779_2|589696|organism=Nannochloropsis oceanica|type=CDS|length=204bp|location=Sequence derived from alignment at scaffold_11:88820..89438+ (Nannochloropsis oceanica)
ATGGTTGTTGTAATATGGGTGATGATTATTGTAAGATGGATTGTTCTGGG
GTGGGAGTTGATGGCCCGGGGGCGTCACGGCATGGATGAGGGTGGGAGTG
GGGGAGGACATGGATGTGCGTGTGGGGGAGGGGTTTGCGATGTCGTACTA
GTGTTCGTGTCTGCCCCTGTGTTTGTATCTGTGTCTACCTATTTTTCTGT
GTAG
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Synonyms
Publications