jgi.p|Nanoce1779_2|590675, mRNA_5882 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590675
Unique NamemRNA_5882
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length645
Alignment locationscaffold_11:825611..826255 +

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Properties
Property NameValue
TranscriptId590761
TrackFilteredModels2
ProteinId590675
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:825611..826255 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590675gene_5882Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590675mRNA_5882-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5882CDS_5882Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5882 ID=mRNA_5882|Name=jgi.p|Nanoce1779_2|590675|organism=Nannochloropsis oceanica|type=mRNA|length=645bp
CAGCCGTGCGTGAATTTAAGTTTTTGTCATGCATTTATTTGATTTAGCGT
CATGCATTGACTTGTGTGTTCTTCAAACGCGCTCCCTGACCCTTAAACAC
AACGCCCGTTTACTTTTCCTCTCTCTTGATGTATTTCTTTGTTTCCTCTT
ATATCCACCATTTCGTTCTTCGTCTTTTTGTTTCCTTCCTTTTTTTAAAA
TATTTTTTTCCTTTCTTTTTTCTTTAACTCTTTCGTTCATTTCTGTATTT
GTTTACTTCGTTTCTGGACCTCATTTCTCCTTGGCTCCTCTACACATTAC
ATCTACAAGACGGAGGGAGGGAGGAAAGGAGGAAGGCAAGGAGGGCGGAA
GGGAAATCAAGAAGCACCCTCCGCTTCAAAAGTAGTCAAAGAGCATCCTC
CCCTTCGCCGCGTCCGCTTCACCAACACCTCGGACATAGGGACACGCTCA
CATGTCAGTCATCAATTATTTTGAATTTCAATAATTCAAATTTGAATGGA
TAGGGAGAAGCACTGAGGCGGACCCTCATCACCGATGACACATCCCCGAT
GATAACCTCCTCCCCCCCCCCTGAAGCTTTTTTCCGTCAACGACTGCGGC
CGCCGTTACCTATCGTGCCGCGCCCCGGTCCCTGCCCCTCGGCCC
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protein sequence of jgi.p|Nanoce1779_2|590675

>mRNA_5882-protein ID=mRNA_5882-protein|Name=jgi.p|Nanoce1779_2|590675|organism=Nannochloropsis oceanica|type=polypeptide|length=119bp
MHLFDLASCIDLCVLQTRSLTLKHNARLLFLSLDVFLCFLLYPPFRSSSF
CFLPFFKIFFSFLFSLTLSFISVFVYFVSGPHFSLAPLHITSTRRREGGK
EEGKEGGREIKKHPPLQK*
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mRNA from alignment at scaffold_11:825611..826255+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5882 ID=mRNA_5882|Name=jgi.p|Nanoce1779_2|590675|organism=Nannochloropsis oceanica|type=mRNA|length=645bp|location=Sequence derived from alignment at scaffold_11:825611..826255+ (Nannochloropsis oceanica)
CAGCCGTGCGTGAATTTAAGTTTTTGTCATGCATTTATTTGATTTAGCGT
CATGCATTGACTTGTGTGTTCTTCAAACGCGCTCCCTGACCCTTAAACAC
AACGCCCGTTTACTTTTCCTCTCTCTTGATGTATTTCTTTGTTTCCTCTT
ATATCCACCATTTCGTTCTTCGTCTTTTTGTTTCCTTCCTTTTTTTAAAA
TATTTTTTTCCTTTCTTTTTTCTTTAACTCTTTCGTTCATTTCTGTATTT
GTTTACTTCGTTTCTGGACCTCATTTCTCCTTGGCTCCTCTACACATTAC
ATCTACAAGACGGAGGGAGGGAGGAAAGGAGGAAGGCAAGGAGGGCGGAA
GGGAAATCAAGAAGCACCCTCCGCTTCAAAAGTAGTCAAAGAGCATCCTC
CCCTTCGCCGCGTCCGCTTCACCAACACCTCGGACATAGGGACACGCTCA
CATGTCAGTCATCAATTATTTTGAATTTCAATAATTCAAATTTGAATGGA
TAGGGAGAAGCACTGAGGCGGACCCTCATCACCGATGACACATCCCCGAT
GATAACCTCCTCCCCCCCCCCTGAAGCTTTTTTCCGTCAACGACTGCGGC
CGCCGTTACCTATCGTGCCGCGCCCCGGTCCCTGCCCCTCGGCCC
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Coding sequence (CDS) from alignment at scaffold_11:825611..826255+

>mRNA_5882 ID=mRNA_5882|Name=jgi.p|Nanoce1779_2|590675|organism=Nannochloropsis oceanica|type=CDS|length=357bp|location=Sequence derived from alignment at scaffold_11:825611..826255+ (Nannochloropsis oceanica)
ATGCATTTATTTGATTTAGCGTCATGCATTGACTTGTGTGTTCTTCAAAC
GCGCTCCCTGACCCTTAAACACAACGCCCGTTTACTTTTCCTCTCTCTTG
ATGTATTTCTTTGTTTCCTCTTATATCCACCATTTCGTTCTTCGTCTTTT
TGTTTCCTTCCTTTTTTTAAAATATTTTTTTCCTTTCTTTTTTCTTTAAC
TCTTTCGTTCATTTCTGTATTTGTTTACTTCGTTTCTGGACCTCATTTCT
CCTTGGCTCCTCTACACATTACATCTACAAGACGGAGGGAGGGAGGAAAG
GAGGAAGGCAAGGAGGGCGGAAGGGAAATCAAGAAGCACCCTCCGCTTCA
AAAGTAG
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Synonyms
Publications