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Properties
| Property Name | Value |
|---|
| TranscriptId | 590989 |
| Track | FilteredModels2 |
| ProteinId | 590903 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_12 | supercontig | scaffold_12:99865..102882 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4948 ID=mRNA_4948|Name=jgi.p|Nanoce1779_2|590903|organism=Nannochloropsis oceanica|type=mRNA|length=2374bp
ACAGGAGAGCCCAAAACGAGCTCGCGGCATTATATGATGGGAGAAAGCAT
ACCCACAATCGGGTTCGAGGAGGCTAGCCAGGAGTTGCTCTCCTCCAGCT
ATAACGCGTCACCATTGTACCATTCCTCGATGATGCGGACACACAGCTCC
GTAAAGGAGCACACGCAGCCTCCTGGTGGCCTTTCGACAATGCTGACGGA
CCTACCTCCTAGTGTTCTATCGCTACTCCTCAACATCATCTTGATTTTCC
TGACCATCTACCTAAGCAATGCCTCGGACTACCTGCGGGACATCGTTCAT
AAGAATCCAAATCTGAGGTTTCGCTTTCTGCTTCGCCTAGTGAGCGACAT
GCCCGAGAGCACCATCGCTGTGGCCGGTGGCATGCTCTTGGGCCTTTTGC
TCTCCAAAAGCTTTCATATTCGAACACAGTTTTCCCAGGAGGTCTTTTTC
TACTTGATCCTTCCGCCTATCATTTTCTACCAAGGCTACTCGCTGAAGAA
ACGAAATTTCTTCCGGTTCTTCCACTACATATTTACGCTGGGAGTAGTTG
GCACAATTATCAACATGGGTGTGGTGGCCATCTGTCTCGTGTCTCTCAAC
AAGGCTTGGTTAGCGCTCGGCCTGCCCCTGGTGGGGTGGGACGACGCAAG
CAGGCACCAGGCCCTGGGCATGGACGACATCCTTCTCCTTTCCTCAGTGC
TCAGCTCCGCCGACGAAGTGGCAGCCCTAGCCATGGTCAATAAGAACCAG
CACCCGAAGTTGAGTGCCTTGCTTTTTGGCGAAGGCGTGCTAAACGATGC
CGTCTCCATCCTTCTCTTCCGGTCCGTGCTCAAGGGCGATGCCGAGTCGA
GCCTTTACGCAGTCACTGTGGCTTGGACAGCCCTCTTTCTCCTCTTCTCC
TCCACTCTTGTGGGGCTGGCCGTGGGCCTTTGTATTTCTCGTCTGCTCAA
GGTGAACACCGGCCTCAACAACCACCCAACCCGTCAGACCATTATCATCG
TTCTGGGGTGCTACGTCTCCTACGCCCTCGCGGAGCTCCTGAACATCAAT
GGGGTACTGTCCGTGTTTGTCTGCGGTATCATCTTCTCACACTTTGCCTG
GCATTCCCTTGCTCCAGAAGCGAAGATCGGCACGGTAAGAATTTTGGTTT
AATAGACTTGAAAGGTAGTAAGGAGGGTAGATATGGTGATCCCCATGCAC
CTGCGCTTTCTGCCCGCTCGGTTTGGTCTTGTTTTCCATGGAGAAAGCTT
TCCCTCTTCAGTAGATTCAGCTGAAGTTCAAGGTTTTCGGTAGCTCGCTC
CTCCAATTCGCGTCTATCTGCCTCCTTTCCATCACACATCAAATTGCACA
CAGGCTATCTTTTCTCGCGCCTTGTCGCAGATCGCCGAAATCTACTCCTT
CACGGCTTTAGGGCTTAGTGTCTATCGCTTCCAAACCAGCGATTTCTCTT
TCCGTTACCTCTGTATCTCTTTCCTTGCCATGGCCCTTGCGCGAGCGGTT
GTGGTGTTCGGGCTTTTCGGGTTAGCCATGTATTTTGACCGAAAGCACAT
GTTCAAGGAGGCATGGAAGGACCAGCTCGTTTTATTTGGGGCGGGGCTTG
TGAGGGGCGCAATTACGTGGGCGCAGGCCTTGCAGCTACCAGGAGGCAAT
CGGCGGGTCCTTATCTCCACCACTCTTCAAGTCATCTCCATCACGCTTGT
AGTAGTAGGTGGGGCCCTACCATCCCTGCTTCGAGCCCTGGGCATGGGTG
AAACCGAATCTCTTGACCCGGGCGAGATGGAAGGAGTAACCGAGGCAGTC
ACCTGCAGTGCCTATGACGTGGAAGGGGAAGACTTGCCGAATAGCAGCAG
CATTGGTGATTTTCAGGACGCAATGCCCTTTCTCTCACATACAGCCTCGT
CGGAAGACGTCCGCCCGCTCCTTCTCAGCAATCACAGTAGTCTGAGCAGC
AACGGTGGGGGTAGCATTCGAGTGGTCAAGCAGCAGCAGCAGCAGCAGTT
GGACCCCTTTCCTGACGCGCCCCCCCGTCTACGACGGCCGGGGGAAGAGG
CGACATTGTTGGACGAGAGCTGGGTGGTGGATGGGAGCCGCGTATTCGAG
GGACGGGTGCACAGAATGTGGGCTGGGATTGACGAGGCTTTGAAGCCTTT
CTTTGGGGGCCGCAGTCGTTTACCGACTTTCCACGGCTCGTATGTGAGCT
ACAGTAATAACACTGGGGGGAGCTATGCGAGGAGCAGCGGTGCGAGCCTC
ATAACAGTCCGTCCGGGTCATGAAGGGTACGGCACTTTGGCTGCTTTACC
GCCATCGGCAGCAGCAACAGCAACAATGGCAGAATTAGCTGTTGCTGCAG
CAGCAGCAGCAAGAGCAGGAGGAG back to topprotein sequence of jgi.p|Nanoce1779_2|590903 >mRNA_4948-protein ID=mRNA_4948-protein|Name=jgi.p|Nanoce1779_2|590903|organism=Nannochloropsis oceanica|type=polypeptide|length=373bp
MMGESIPTIGFEEASQELLSSSYNASPLYHSSMMRTHSSVKEHTQPPGGL
STMLTDLPPSVLSLLLNIILIFLTIYLSNASDYLRDIVHKNPNLRFRFLL
RLVSDMPESTIAVAGGMLLGLLLSKSFHIRTQFSQEVFFYLILPPIIFYQ
GYSLKKRNFFRFFHYIFTLGVVGTIINMGVVAICLVSLNKAWLALGLPLV
GWDDASRHQALGMDDILLLSSVLSSADEVAALAMVNKNQHPKLSALLFGE
GVLNDAVSILLFRSVLKGDAESSLYAVTVAWTALFLLFSSTLVGLAVGLC
ISRLLKVNTGLNNHPTRQTIIIVLGCYVSYALAELLNINGVLSVFVCGII
FSHFAWHSLAPEAKIGTVRILV* back to topmRNA from alignment at scaffold_12:99865..102882- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4948 ID=mRNA_4948|Name=jgi.p|Nanoce1779_2|590903|organism=Nannochloropsis oceanica|type=mRNA|length=3018bp|location=Sequence derived from alignment at scaffold_12:99865..102882- (Nannochloropsis oceanica)
ACAGGAGAGCCCAAAACGAGCTCGCGGCATTATATGATGGGAGAAAGCAT
ACCCACAATCGGGTTCGAGGAGGCTAGCCAGGAGTTGCTCTCCTCCAGCT
ATAACGCGTCACCATTGTACCATTCCTCGATGATGCGGACACACAGCTCC
GTAAAGGAGCACACGCAGCCTCCTGGTGGCCTTTCGACAATGCTGACGGA
CCTACCTCCTAGTGTTCTATCGCTACTCCTCAACATCATCTTGATTTTCC
TGACCATCTACCTAAGCAATGCCTCGGACTACCTGCGGGACATCGTTCAT
AAGGTAGGTTTTCGATCCAGCCGCGTTAGTGCGGCAACAATCCGCCAAGC
TTTGGTCCCGAATCGTCTTATCAGTTGTGGATTTCCAGGATGTGTGTGCG
TGGGAGTGGTGCTCATGTCTCTGCCCTCCCCGCCCAGGGCGGGGCCATTG
TCAAGCATTAATTTTTGTGTGTGTGCGGGGCGGGACGTCCACACGTAGAA
ATTTTTCAGAAGGTGTAGCTGGATCCCATCGCCATACGCATTTGTTGCGG
TCGCCAAATGAATCCGCTCAGATATATCCCCTCTTCCCGTTTCCCTGTAC
TGACAGAATCCAAATCTGAGGTTTCGCTTTCTGCTTCGCCTAGTGAGCGA
CATGCCCGAGAGCACCATCGCTGTGGCCGGTGGCATGCTCTTGGGCCTTT
TGCTCTCCAAAAGCTTTCATATTCGAACACAGTTTTCCCAGGAGGTCTTT
TTCTACTTGATCCTTCCGCCTATCATTTTCTACCAAGGGTAAGTGGAAGG
GAGACATGCGATGAAGGCGGGAGTACCCATAAAGGGCAATTACTAGTAAT
GTAGCCTTTTTTCATCGTTGGTTCGAAGAAAAAGAGACGCGTTGATAGAG
AAAGGCGCTTTCGAGTGAAAAGAAGTCACCGACGCTCTCCTCTCCTTTCC
AACAACTGTTCCCATCATCTCAGCTACTCGCTGAAGAAACGAAATTTCTT
CCGGTTCTTCCACTACATATTTACGCTGGGAGTAGTTGGCACAATTATCA
ACATGGGTGTGGTGGCCATCTGTCTCGTGTCTCTCAACAAGGCTTGGTTA
GCGCTCGGCCTGCCCCTGGTGGGGTGGGACGACGCAAGCAGGCACCAGGC
CCTGGGCATGGACGACATCCTTCTCCTTTCCTCAGTGCTCAGCTCCGCCG
ACGAAGTGGCAGCCCTAGCCATGGTCAATAAGAACCAGCACCCGAAGTTG
AGTGCCTTGCTTTTTGGCGAAGGCGTGCTAAACGATGCCGTCTCCATCCT
TCTCTTCCGGTCCGTGCTCAAGGGCGATGCCGAGTCGAGCCTTTACGCAG
TCACTGTGGCTTGGACAGCCCTCTTTCTCCTCTTCTCCTCCACTCTTGTG
GGGCTGGCCGTGGGCCTTTGTATTTCTCGTCTGCTCAAGGTGAACACCGG
CCTCAACAACCACCCAACCCGTCAGACCATTATCATCGTTCTGGGGTGCT
ACGTCTCCTACGCCCTCGCGGAGCTCCTGAACATCAATGGGGTACTGTCC
GTGTTTGTCTGCGGTATCATCTTCTCACACTTTGCCTGGCATTCCCTTGC
TCCAGAAGCGAAGATCGGCACGGTAAGAATTTTGGTTTAATAGACTTGAA
AGGTAGTAAGGAGGGTAGATATGGTGATCCCCATGCACCTGCGCTTTCTG
CCCGCTCGGTTTGGTCTTGTTTTCCATGGAGAAAGCTTTCCCTCTTCAGT
AGATTCAGCTGAAGTTCAAGGTTTTCGGTAGCTCGCTCCTCCAATTCGCG
TCTATCTGCCTCCTTTCCATCACACATCAAATTGCACACAGGCTATCTTT
TCTCGCGCCTTGTCGCAGATCGCCGAAATCTACTCCTTCACGGCTTTAGG
GCTTAGTGTCTATCGCTTCCAAACCAGCGATTTCTCTTTCCGTTACCTCT
GTATCTCTTTCCTTGCCATGGCCCTTGCGCGAGCGGTTGTGGTGTTCGGG
CTTTTCGGGTTAGCCATGTATTTTGACCGAAAGCACATGTTCAAGGAGGC
ATGGAAGGACCAGCTCGTTTTATTTGGGGCGGGGCTTGTGAGGGGCGCAA
TTACGTGGGCGCAGGTACGCATGTTATTTTGATAAGCGGTGCAGGGGGCT
ACGGTCGTATCCCTGTGTGCCTGCGCTGCAGGTGCACCTCACGGAAGTGT
TTTTCCTGTCCTGTTTCCCTTTGATATTCCAATCCTCGCTCATCTCACCC
TTTCCTATCCGTAAATGCAGGCCTTGCAGCTACCAGGAGGCAATCGGCGG
GTCCTTATCTCCACCACTCTTCAAGTCATCTCCATCACGCTTGTAGTAGT
AGGTGGGGCCCTACCATCCCTGCTTCGAGCCCTGGGCATGGGTGAAACCG
AATCTCTTGACCCGGGCGAGATGGAAGGAGTAACCGAGGCAGTCACCTGC
AGTGCCTATGACGTGGAAGGGGAAGACTTGCCGAATAGCAGCAGCATTGG
TGATTTTCAGGACGCAATGCCCTTTCTCTCACATACAGCCTCGTCGGAAG
ACGTCCGCCCGCTCCTTCTCAGCAATCACAGTAGTCTGAGCAGCAACGGT
GGGGGTAGCATTCGAGTGGTCAAGCAGCAGCAGCAGCAGCAGTTGGACCC
CTTTCCTGACGCGCCCCCCCGTCTACGACGGCCGGGGGAAGAGGCGACAT
TGTTGGACGAGAGCTGGGTGGTGGATGGGAGCCGCGTATTCGAGGGACGG
GTGCACAGAATGTGGGCTGGGATTGACGAGGCTTTGAAGCCTTTCTTTGG
GGGCCGCAGTCGTTTACCGACTTTCCACGGCTCGTATGTGAGCTACAGTA
ATAACACTGGGGGGAGCTATGCGAGGAGCAGCGGTGCGAGCCTCATAACA
GTCCGTCCGGGTCATGAAGGGTACGGCACTTTGGCTGCTTTACCGCCATC
GGCAGCAGCAACAGCAACAATGGCAGAATTAGCTGTTGCTGCAGCAGCAG
CAGCAAGAGCAGGAGGAG back to topCoding sequence (CDS) from alignment at scaffold_12:99865..102882- >mRNA_4948 ID=mRNA_4948|Name=jgi.p|Nanoce1779_2|590903|organism=Nannochloropsis oceanica|type=CDS|length=3357bp|location=Sequence derived from alignment at scaffold_12:99865..102882- (Nannochloropsis oceanica)
CTACTCGCTGAAGAAACGAAATTTCTTCCGGTTCTTCCACTACATATTTA
CGCTGGGAGTAGTTGGCACAATTATCAACATGGGTGTGGTGGCCATCTGT
CTCGTGTCTCTCAACAAGGCTTGGTTAGCGCTCGGCCTGCCCCTGGTGGG
GTGGGACGACGCAAGCAGGCACCAGGCCCTGGGCATGGACGACATCCTTC
TCCTTTCCTCAGTGCTCAGCTCCGCCGACGAAGTGGCAGCCCTAGCCATG
GTCAATAAGAACCAGCACCCGAAGTTGAGTGCCTTGCTTTTTGGCGAAGG
CGTGCTAAACGATGCCGTCTCCATCCTTCTCTTCCGGTCCGTGCTCAAGG
GCGATGCCGAGTCGAGCCTTTACGCAGTCACTGTGGCTTGGACAGCCCTC
TTTCTCCTCTTCTCCTCCACTCTTGTGGGGCTGGCCGTGGGCCTTTGTAT
TTCTCGTCTGCTCAAGGTGAACACCGGCCTCAACAACCACCCAACCCGTC
AGACCATTATCATCGTTCTGGGGTGCTACGTCTCCTACGCCCTCGCGGAG
CTCCTGAACATCAATGGGGTACTGTCCGTGTTTGTCTGCGGTATCATCTT
CTCACACTTTGCCTGGCATTCCCTTGCTCCAGAAGCGAAGATCGGCACGG
TAAGAATTTTGGTTTAAAATCCAAATCTGAGGTTTCGCTTTCTGCTTCGC
CTAGTGAGCGACATGCCCGAGAGCACCATCGCTGTGGCCGGTGGCATGCT
CTTGGGCCTTTTGCTCTCCAAAAGCTTTCATATTCGAACACAGTTTTCCC
AGGAGGTCTTTTTCTACTTGATCCTTCCGCCTATCATTTTCTACCAAGGA
TGATGGGAGAAAGCATACCCACAATCGGGTTCGAGGAGGCTAGCCAGGAG
TTGCTCTCCTCCAGCTATAACGCGTCACCATTGTACCATTCCTCGATGAT
GCGGACACACAGCTCCGTAAAGGAGCACACGCAGCCTCCTGGTGGCCTTT
CGACAATGCTGACGGACCTACCTCCTAGTGTTCTATCGCTACTCCTCAAC
ATCATCTTGATTTTCCTGACCATCTACCTAAGCAATGCCTCGGACTACCT
GCGGGACATCGTTCATAAGCTACTCGCTGAAGAAACGAAATTTCTTCCGG
TTCTTCCACTACATATTTACGCTGGGAGTAGTTGGCACAATTATCAACAT
GGGTGTGGTGGCCATCTGTCTCGTGTCTCTCAACAAGGCTTGGTTAGCGC
TCGGCCTGCCCCTGGTGGGGTGGGACGACGCAAGCAGGCACCAGGCCCTG
GGCATGGACGACATCCTTCTCCTTTCCTCAGTGCTCAGCTCCGCCGACGA
AGTGGCAGCCCTAGCCATGGTCAATAAGAACCAGCACCCGAAGTTGAGTG
CCTTGCTTTTTGGCGAAGGCGTGCTAAACGATGCCGTCTCCATCCTTCTC
TTCCGGTCCGTGCTCAAGGGCGATGCCGAGTCGAGCCTTTACGCAGTCAC
TGTGGCTTGGACAGCCCTCTTTCTCCTCTTCTCCTCCACTCTTGTGGGGC
TGGCCGTGGGCCTTTGTATTTCTCGTCTGCTCAAGGTGAACACCGGCCTC
AACAACCACCCAACCCGTCAGACCATTATCATCGTTCTGGGGTGCTACGT
CTCCTACGCCCTCGCGGAGCTCCTGAACATCAATGGGGTACTGTCCGTGT
TTGTCTGCGGTATCATCTTCTCACACTTTGCCTGGCATTCCCTTGCTCCA
GAAGCGAAGATCGGCACGGTAAGAATTTTGGTTTAAAATCCAAATCTGAG
GTTTCGCTTTCTGCTTCGCCTAGTGAGCGACATGCCCGAGAGCACCATCG
CTGTGGCCGGTGGCATGCTCTTGGGCCTTTTGCTCTCCAAAAGCTTTCAT
ATTCGAACACAGTTTTCCCAGGAGGTCTTTTTCTACTTGATCCTTCCGCC
TATCATTTTCTACCAAGGATGATGGGAGAAAGCATACCCACAATCGGGTT
CGAGGAGGCTAGCCAGGAGTTGCTCTCCTCCAGCTATAACGCGTCACCAT
TGTACCATTCCTCGATGATGCGGACACACAGCTCCGTAAAGGAGCACACG
CAGCCTCCTGGTGGCCTTTCGACAATGCTGACGGACCTACCTCCTAGTGT
TCTATCGCTACTCCTCAACATCATCTTGATTTTCCTGACCATCTACCTAA
GCAATGCCTCGGACTACCTGCGGGACATCGTTCATAAGCTACTCGCTGAA
GAAACGAAATTTCTTCCGGTTCTTCCACTACATATTTACGCTGGGAGTAG
TTGGCACAATTATCAACATGGGTGTGGTGGCCATCTGTCTCGTGTCTCTC
AACAAGGCTTGGTTAGCGCTCGGCCTGCCCCTGGTGGGGTGGGACGACGC
AAGCAGGCACCAGGCCCTGGGCATGGACGACATCCTTCTCCTTTCCTCAG
TGCTCAGCTCCGCCGACGAAGTGGCAGCCCTAGCCATGGTCAATAAGAAC
CAGCACCCGAAGTTGAGTGCCTTGCTTTTTGGCGAAGGCGTGCTAAACGA
TGCCGTCTCCATCCTTCTCTTCCGGTCCGTGCTCAAGGGCGATGCCGAGT
CGAGCCTTTACGCAGTCACTGTGGCTTGGACAGCCCTCTTTCTCCTCTTC
TCCTCCACTCTTGTGGGGCTGGCCGTGGGCCTTTGTATTTCTCGTCTGCT
CAAGGTGAACACCGGCCTCAACAACCACCCAACCCGTCAGACCATTATCA
TCGTTCTGGGGTGCTACGTCTCCTACGCCCTCGCGGAGCTCCTGAACATC
AATGGGGTACTGTCCGTGTTTGTCTGCGGTATCATCTTCTCACACTTTGC
CTGGCATTCCCTTGCTCCAGAAGCGAAGATCGGCACGGTAAGAATTTTGG
TTTAAAATCCAAATCTGAGGTTTCGCTTTCTGCTTCGCCTAGTGAGCGAC
ATGCCCGAGAGCACCATCGCTGTGGCCGGTGGCATGCTCTTGGGCCTTTT
GCTCTCCAAAAGCTTTCATATTCGAACACAGTTTTCCCAGGAGGTCTTTT
TCTACTTGATCCTTCCGCCTATCATTTTCTACCAAGGATGATGGGAGAAA
GCATACCCACAATCGGGTTCGAGGAGGCTAGCCAGGAGTTGCTCTCCTCC
AGCTATAACGCGTCACCATTGTACCATTCCTCGATGATGCGGACACACAG
CTCCGTAAAGGAGCACACGCAGCCTCCTGGTGGCCTTTCGACAATGCTGA
CGGACCTACCTCCTAGTGTTCTATCGCTACTCCTCAACATCATCTTGATT
TTCCTGACCATCTACCTAAGCAATGCCTCGGACTACCTGCGGGACATCGT
TCATAAG back to top
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