jgi.p|Nanoce1779_2|591790, mRNA_5226 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|591790
Unique Name	mRNA_5226
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1205
Alignment location	scaffold_12:771923..773264 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	591876
Track	FilteredModels2
ProteinId	591790

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:771923..773264 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591790	gene_5226	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591790	mRNA_5226-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5226	CDS_5226	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:771923..773264+
coding sequence from alignment at scaffold_12:771923..773264+

mRNA sequence

>mRNA_5226 ID=mRNA_5226|Name=jgi.p|Nanoce1779_2|591790|organism=Nannochloropsis oceanica|type=mRNA|length=1205bp
CATGGAAGCGACTCGCGCACAGACCGTGTTGGTGGGAGGGGGGGTGAGCA
AGTCGGTTGAAGACGAGGCGGAGGCGGAGGCGGAGGAGGAGGGAGGGCCA
GGGAGCTTGTCGTCGTCCTTTGTGGTCCTTGTTTGTGAGGTTTCCTTAGT
ATCGGTGTGCTGCTGCTGCTGCTGATTCTGTTGCTGTTCTTGTTGCCGCT
GTTGTTCTTGCTCTTTCTGAAGGTGCAGCAGCTCTGCGTCTGTAAAGGGG
ATGCTCCTATCTTGAAACTGCTGCTGCTGATGCTGCTGTTGTTTCTCTTT
CTGCTGCTCTGTGATGTCGAGCTTGGATAGCAGGAGCAAGGCACTCTCCT
CTTTGAAATGGCTGCGGCACGTGCCCTCGTCCTTCTCCGCCTGAATGGAT
TCCTCCTCCCTCCCTTGCTGCTGCTTCTGCTTGTTTTTCAGGGGGTGGAA
CTCGTGGTCCTTATCACCGTTGCACCCACCGACGCCCCCTCCCAAGAAAT
AAAACACGCCACCTGTGTCCTGTTTAGGGTGGTACTTGCGACCACGACGT
CCGGGAGACAGACAAGCACAGACCCGTCTAGTCGATACCTGATGGAAAGG
GGGGGGAGGAAAGGGGAGGGTGGGAGTGTGAGGAACGACGTGGAGTAGGT
TTGACAGGTGCCCAATTACGGGATCTATGCTCTCCTGCTGCAGGGCGTAA
GCGCGCGTAAGATGTGAGTGTGGATTATGCTTGCGGTGGGTAGAAAGGTA
AAAGTAATTGACATGGATCTCTGGTCTCGTCTCCGTATGTTTCACAAAGC
TAGCTACCTCATCAAAAGAACTGGAGCCGGAGCTATTGTATAACGTGGAG
GAGTCACTCAAGGAGGACGAGCAGTGGGACGACGCTGCTTCATCCACCTC
TAAGGCCTCGTGCCTTCGAAGACCAGGCGCTCCTCCTGGTGCAGCATGCT
CATCGCGGCCGGTCAAAAGGGCGCGCTCGACGCAAGCCATATTGTCAGTA
CAAAATTTAAGTACCAGCCGGCGATTGGTACCAAAAATGCGCAAAAGAAC
GCGACACGAAGCAGGGAGCTCGTCTAGACAACGTTTTGCGTGTTGCTGTG
TGGCGTAAGGCAGTGCAACTCTTAGTGGCGAGCACGACGATTCCCCTGTT
CCGATCTTTGGTGGGTTGAAGGACAAAGGAAAACTGGGGCAGTGCCTGCA
GCTGT

protein sequence of jgi.p|Nanoce1779_2|591790

>mRNA_5226-protein ID=mRNA_5226-protein|Name=jgi.p|Nanoce1779_2|591790|organism=Nannochloropsis oceanica|type=polypeptide|length=97bp
MAAARALVLLRLNGFLLPPLLLLLLVFQGVELVVLITVAPTDAPSQEIKH
ATCVLFRVVLATTTSGRQTSTDPSSRYLMERGGRKGEGGSVRNDVE*

mRNA from alignment at scaffold_12:771923..773264+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5226 ID=mRNA_5226|Name=jgi.p|Nanoce1779_2|591790|organism=Nannochloropsis oceanica|type=mRNA|length=1342bp|location=Sequence derived from alignment at scaffold_12:771923..773264+ (Nannochloropsis oceanica)
CATGGAAGCGACTCGCGCACAGACCGTGTTGGTGGGAGGGGGGGTGAGCA
AGTCGGTTGAAGACGAGGCGGAGGCGGAGGCGGAGGAGGAGGGAGGGCCA
GGGAGCTTGTCGTCGTCCTTTGTGGTCCTTGTTTGTGAGGTTTCCTTAGT
ATCGGTGTGCTGCTGCTGCTGCTGATTCTGTTGCTGTTCTTGTTGCCGCT
GTTGTTCTTGCTCTTTCTGAAGGTGCAGCAGCTCTGCGTCTGTAAAGGGG
ATGCTCCTATCTTGAAACTGCTGCTGCTGATGCTGCTGTTGTTTCTCTTT
CTGCTGCTCTGTGATGTCGAGCTTGGATAGCAGGAGCAAGGCACTCTCCT
CTTTGAAATGGCTGCGGCACGTGCCCTCGTCCTTCTCCGCCTGAATGGAT
TCCTCCTCCCTCCCTTGCTGCTGCTTCTGCTTGTTTTTCAGGGGGTGGAA
CTCGTGGTCCTTATCACCGTTGCACCCACCGACGCCCCCTCCCAAGAAAT
AAAACACGCCACCTGTGTCCTGTTTAGGGTGGTACTTGCGACCACGACGT
CCGGGAGACAGACAAGCACAGACCCGTCTAGTCGATACCTGATGGAAAGG
GGGGGGAGGAAAGGGGAGGGTGGGAGTGTGAGGAACGACGTGGAGTAGGT
TTGACAGGTGCCCAATTACGGGATCTATGCTCTCCTGCTGCAGGGCGTAA
GCGCGCGTAAGATGTGAGTGTGGATTATGCTTGCGGTGGGTAGAAAGGTA
AAAGTAATTGACATGGATCTCTGGTCTCGTCTCCGTATGTTTCACAAAGC
TAGCTACCTCATCAAAAGAACTGGAGCCGGAGCTATTGTATAACGTGGAG
GAGTCACTCAAGGAGGACGAGCAGTGGGACGACGCTGCTTCATCCACCTC
TAAGGCCTCGTGCCTTCGAAGACCAGGCGCTCCTCCTGGTGCAGCATGCT
CATCGCGGCCGGTCAAAAGGGCGCGCTCGACGCAAGCCATATTGTCAGTA
CAAAATTTAAGTACCAGCCGGCGATTGGTACCAAAAATGCGCAAAAGAAC
GCGACACGAAGCAGGGAGCTCGTCTAGACAACGTTTTGCGTGTTGCTTGA
CGTGTGGGAGGAAGGAAAAAAGGGAAGCCCGGAGAAAGGGGGAGGCAATT
AGCCAAACACGAGGCGACACGAGAGAGGAGAACGGTTCCTCTTGGGACAT
TGAGATGAGACAGCGATGATTATTCTTCGTACCTGTGTGGCGTAAGGCAG
TGCAACTCTTAGTGGCGAGCACGACGATTCCCCTGTTCCGATCTTTGGTG
GGTTGAAGGACAAAGGAAAACTGGGGCAGTGCCTGCAGCTGT

Coding sequence (CDS) from alignment at scaffold_12:771923..773264+

>mRNA_5226 ID=mRNA_5226|Name=jgi.p|Nanoce1779_2|591790|organism=Nannochloropsis oceanica|type=CDS|length=291bp|location=Sequence derived from alignment at scaffold_12:771923..773264+ (Nannochloropsis oceanica)
ATGGCTGCGGCACGTGCCCTCGTCCTTCTCCGCCTGAATGGATTCCTCCT
CCCTCCCTTGCTGCTGCTTCTGCTTGTTTTTCAGGGGGTGGAACTCGTGG
TCCTTATCACCGTTGCACCCACCGACGCCCCCTCCCAAGAAATAAAACAC
GCCACCTGTGTCCTGTTTAGGGTGGTACTTGCGACCACGACGTCCGGGAG
ACAGACAAGCACAGACCCGTCTAGTCGATACCTGATGGAAAGGGGGGGGA
GGAAAGGGGAGGGTGGGAGTGTGAGGAACGACGTGGAGTAG

Synonyms

Publications