jgi.p|Nanoce1779_2|671252, mRNA_5092 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|671252
Unique Name	mRNA_5092
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1448
Alignment location	scaffold_12:431295..432907 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	671338
Track	FilteredModels2
ProteinId	671252

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:431295..432907 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|671252	gene_5092	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|671252	mRNA_5092-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5092	CDS_5092	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:431295..432907+
coding sequence from alignment at scaffold_12:431295..432907+

mRNA sequence

>mRNA_5092 ID=mRNA_5092|Name=jgi.p|Nanoce1779_2|671252|organism=Nannochloropsis oceanica|type=mRNA|length=1448bp
GTGTCGTGAAGACGCTGCATGCGCTCGTCTTCCATGGTCAAGTAGGCTTA
GCTGCTGGTGTAGAGGCCGCTGATCGAGCTGTGAATTGTGTGCGTTGTTG
CGTGTGTTGGAAACGGTGAGACTTCGTGAGAATTTTAAGTAGACTCACGC
CAATGCTCTTGGAGGGTGAAGGGTCGCTCAAGTGCGTGTTTGTATCACGC
AAAAGGGGGAGGAATAAGAAGCAATGCGGGCCATGTGCATTGCTTGGTGG
AGGAAGGTCTCCACTGGCAAGTGATCGCCGTCTTATGCATCAAACCCCTT
AAGCCTAGTAAACACAACGGGCATCGGGCTCATCACCATGGTACATACAG
GCACAAATATCTGGAGACTGCCGTGGGATGGTCATTGCGCTTACTTTTGG
TTTCTTGTTGGTAGCTTGCATCGAAACCTTCCCAACCACTCTGCACCCAC
TCCCTCTCTTCCTTCATTCATCAAAATAAGGATACCAACACCCTTTGACC
CACCCTTCACCTTCCAGGGCACACAATGCGACCCCCCATGCATCGGGGTG
GTGGTCGTGGACCTCCGGGGCGCGGCGGTGGAGGTTTCCGGGGCGGACGA
GGCGGTGGCGGCGGTGGACGTTATGGTCCCGGTCGAGGCTATGATGAGGG
CCCTCCGGAGCAAGTGGTGGAGGCCGGGTCGTTCATGCACGAGGTTGAGG
GCGAGATGCTCATCAAGCTGACCAATGAAAACATTCCTTATTTCAACGCC
GGGATTTTTTTGGAAAACAAGACGCGGGTGGGGAAGGTGGAGGAGGTATT
GGGGCCCATTAATCAGGTGTATTTCACTGTTAAACCGGACTCTGGCGTGT
CTGCCAAATCTTTCAAGCCTGATGACAAGGTCTACATTGGCACCGATAAA
CTCTTGCCCCTTGCCCGCTTTACAAGCAGTGGTGGTGGAGGAGGAAGAGG
AGGCGGACGAGGAGGAGGACGAGGAGGAGGACGAGGTGGGGGAAGGGGGG
GGGTTGGCGCGGCGCGTGGTGGCGGTTTCGGGGGAAGGGGAGGAGGGAGG
GGGTTCGGAGGAGGAAGGAGCTTTGGAGGGGGAGGTAGGGGAGGAGGGTT
TTCATCACGGGGACGGGGGCCGCCGCGAGGTGGAGGGTTTAGGGGAGGCG
GGGGAAGGGGTCGGTTTTAAGCGAGAAAAAGGATGGTATTTATGTGTGTA
TGTGTGCGTGAGTGTACGCAGCCGAGTGAGGAGGCGTGACAAGCCAGAGA
GAAATGAGATACAGGGATTGAGAAAATGAAGGGGAAAAGAGAGTGTGTGC
ATGATGCAGCTTGTGGCCTCCGTGTATTTAAAGAAGCATGACCCCACAAA
AAGACATGCCAAAAAAATGAAGTAAAACGAGCAGGATACTTAAAAACTGC
CTTGGTGTGACGCCACATTATTCTTAAGAATTTACAGTCTTTTTACAC

protein sequence of jgi.p|Nanoce1779_2|671252

>mRNA_5092-protein ID=mRNA_5092-protein|Name=jgi.p|Nanoce1779_2|671252|organism=Nannochloropsis oceanica|type=polypeptide|length=215bp
MRPPMHRGGGRGPPGRGGGGFRGGRGGGGGGRYGPGRGYDEGPPEQVVEA
GSFMHEVEGEMLIKLTNENIPYFNAGIFLENKTRVGKVEEVLGPINQVYF
TVKPDSGVSAKSFKPDDKVYIGTDKLLPLARFTSSGGGGGRGGGRGGGRG
GGRGGGRGGVGAARGGGFGGRGGGRGFGGGRSFGGGGRGGGFSSRGRGPP
RGGGFRGGGGRGRF*

mRNA from alignment at scaffold_12:431295..432907+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5092 ID=mRNA_5092|Name=jgi.p|Nanoce1779_2|671252|organism=Nannochloropsis oceanica|type=mRNA|length=1613bp|location=Sequence derived from alignment at scaffold_12:431295..432907+ (Nannochloropsis oceanica)
GTGTCGTGAAGACGCTGCATGCGCTCGTCTTCCATGGTCAAGTAGGCTTA
GCTGCTGGTGTAGAGGCCGCTGATCGAGCTGTGAATTGTGTGCGTTGTTG
CGTGTGTTGGAAACGGTGAGACTTCGTGAGAATTTTAAGTAGACTCACGC
CAATGCTCTTGGAGGGTGAAGGGTCGCTCAAGTGCGTGTTTGTATCACGC
AAAAGGGGGAGGAATAAGAAGCAATGCGGGCCATGTGCATTGCTTGGTGG
AGGAAGGTCTCCACTGGCAAGTGATCGCCGTCTTATGCATCAAACCCCTT
AAGCCTAGTAAACACAACGGGCATCGGGCTCATCACCATGGTACATACAG
GCACAAATATCTGGAGACTGCCGTGGGATGGTCATTGCGCTTACTTTTGG
TTTCTTGTTGGTAGCTTGCATCGAAACCTTCCCAACCACTCTGCACCCAC
TCCCTCTCTTCCTTCATTCATCAAAATAAGGATACCAACACCCTTTGACC
CACCCTTCACCTTCCAGGGCACACAATGCGACCCCCCATGCATCGGGGTG
GTGGTCGTGGACCTCCGGGGCGCGGCGGTGGAGGTTTCCGGGGCGGACGA
GGTAAGCTATTTAATTGTCAACCTACCCCCATCCCCCTGCCCCTCCCCCA
TCCCTCTTCCCCTATCCTCATCCCCCTCCTTCTATCCCCCTTTCCTTCCC
CTTCTCATCTCTTTTTCTGGCTTCCTCTACCCCATCTCTTTTTTTTGGCT
TCCTCTACACCAATAGGCGGTGGCGGCGGTGGACGTTATGGTCCCGGTCG
AGGCTATGATGAGGGCCCTCCGGAGCAAGTGGTGGAGGCCGGGTCGTTCA
TGCACGAGGTTGAGGGCGAGATGCTCATCAAGCTGACCAATGAAAACATT
CCTTATTTCAACGCCGGGATTTTTTTGGAAAACAAGACGCGGGTGGGGAA
GGTGGAGGAGGTATTGGGGCCCATTAATCAGGTGTATTTCACTGTTAAAC
CGGACTCTGGCGTGTCTGCCAAATCTTTCAAGCCTGATGACAAGGTCTAC
ATTGGCACCGATAAACTCTTGCCCCTTGCCCGCTTTACAAGCAGTGGTGG
TGGAGGAGGAAGAGGAGGCGGACGAGGAGGAGGACGAGGAGGAGGACGAG
GTGGGGGAAGGGGGGGGGTTGGCGCGGCGCGTGGTGGCGGTTTCGGGGGA
AGGGGAGGAGGGAGGGGGTTCGGAGGAGGAAGGAGCTTTGGAGGGGGAGG
TAGGGGAGGAGGGTTTTCATCACGGGGACGGGGGCCGCCGCGAGGTGGAG
GGTTTAGGGGAGGCGGGGGAAGGGGTCGGTTTTAAGCGAGAAAAAGGATG
GTATTTATGTGTGTATGTGTGCGTGAGTGTACGCAGCCGAGTGAGGAGGC
GTGACAAGCCAGAGAGAAATGAGATACAGGGATTGAGAAAATGAAGGGGA
AAAGAGAGTGTGTGCATGATGCAGCTTGTGGCCTCCGTGTATTTAAAGAA
GCATGACCCCACAAAAAGACATGCCAAAAAAATGAAGTAAAACGAGCAGG
ATACTTAAAAACTGCCTTGGTGTGACGCCACATTATTCTTAAGAATTTAC
AGTCTTTTTACAC

Coding sequence (CDS) from alignment at scaffold_12:431295..432907+

>mRNA_5092 ID=mRNA_5092|Name=jgi.p|Nanoce1779_2|671252|organism=Nannochloropsis oceanica|type=CDS|length=1290bp|location=Sequence derived from alignment at scaffold_12:431295..432907+ (Nannochloropsis oceanica)
ATGCGACCCCCCATGCATCGGGGTGGTGGTCGTGGACCTCCGGGGCGCGG
CGGTGGAGGTTTCCGGGGCGGACGAGGCGGTGGCGGCGGTGGACGTTATG
GTCCCGGTCGAGGCTATGATGAGGGCCCTCCGGAGCAAGTGGTGGAGGCC
GGGTCGTTCATGCACGAGGTTGAGGGCGAGATGCTCATCAAGCTGACCAA
TGAAAACATTCCTTATTTCAACGCCGGGATTTTTTTGGAAAACAAGACGC
GGGTGGGGAAGGTGGAGGAGGTATTGGGGCCCATTAATCAGGTGTATTTC
ACTGTTAAACCGGACTCTGGCGTGTCTGCCAAATCTTTCAAGCCTGATGA
CAAGGTCTACATTGGCACCGATAAACTCTTGCCCCTTGCCCGCTTTACAA
GCAGTGGTGGTGGAGGAGGAAGAGGAGGCGGACGAGGAGGAGGACGAGGA
GGAGGACGAGGTGGGGGAAGGGGGGGGGTTGGCGCGGCGCGTGGTGGCGG
TTTCGGGGGAAGGGGAGGAGGGAGGGGGTTCGGAGGAGGAAGGAGCTTTG
GAGGGGGAGGTAGGGGAGGAGGGTTTTCATCACGGGGACGGGGGCCGCCG
CGAGGTGGAGGGTTTAGGGGAGGCGGGGGAAGGGGTCGGTTTTAAATGCG
ACCCCCCATGCATCGGGGTGGTGGTCGTGGACCTCCGGGGCGCGGCGGTG
GAGGTTTCCGGGGCGGACGAGGCGGTGGCGGCGGTGGACGTTATGGTCCC
GGTCGAGGCTATGATGAGGGCCCTCCGGAGCAAGTGGTGGAGGCCGGGTC
GTTCATGCACGAGGTTGAGGGCGAGATGCTCATCAAGCTGACCAATGAAA
ACATTCCTTATTTCAACGCCGGGATTTTTTTGGAAAACAAGACGCGGGTG
GGGAAGGTGGAGGAGGTATTGGGGCCCATTAATCAGGTGTATTTCACTGT
TAAACCGGACTCTGGCGTGTCTGCCAAATCTTTCAAGCCTGATGACAAGG
TCTACATTGGCACCGATAAACTCTTGCCCCTTGCCCGCTTTACAAGCAGT
GGTGGTGGAGGAGGAAGAGGAGGCGGACGAGGAGGAGGACGAGGAGGAGG
ACGAGGTGGGGGAAGGGGGGGGGTTGGCGCGGCGCGTGGTGGCGGTTTCG
GGGGAAGGGGAGGAGGGAGGGGGTTCGGAGGAGGAAGGAGCTTTGGAGGG
GGAGGTAGGGGAGGAGGGTTTTCATCACGGGGACGGGGGCCGCCGCGAGG
TGGAGGGTTTAGGGGAGGCGGGGGAAGGGGTCGGTTTTAA

Synonyms

Publications