jgi.p|Nanoce1779_2|70404, mRNA_5550 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|70404
Unique NamemRNA_5550
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length498
Alignment locationscaffold_13:705827..706324 +

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Properties
Property NameValue
TranscriptId70490
TrackFilteredModels2
ProteinId70404
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:705827..706324 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|70404gene_5550Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|70404mRNA_5550-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5550CDS_5550Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5550 ID=mRNA_5550|Name=jgi.p|Nanoce1779_2|70404|organism=Nannochloropsis oceanica|type=mRNA|length=498bp
ACGCGTTCCTACGTGTGTAGTGTAGGTAGGTAGGCGGGTGCGGAGGGCGA
GGGTTAGGACGGCGGCATTCATGACATTCTTCAAGCAGACGAAACAAAAG
GCATGGGACAAAATGCAATGGACTGTGCTGCTCAGGGCTGGTCGCTGATG
GTTGTGATGGTGAGCGTGGCGTGGCATATTGTGGGCAGTCGGAAAAATGG
TGCATGCATGGTGCTTGGGCGTGAGTATCCGCCCGCGCGTTTGTTTGCAC
GCCAGAGGCATCCGGCGCCAGGCACCAATCCATTGATCAGCCTCCCAGTC
ACTCCTGGGGTGTTCCCCCCCCCCCTTGAGTTGTGTCCAGCAAGCAGAGC
AGGGAAGAAAGAGATGGTACGGTTCATCAAATCCGTTGCCATTTGAAAAG
AGCTCACGCTGCGGGAGGGTCGGAGGGAGACCACAATAATCGTAACCGCA
TCATCAAATCACTTCCCACAACAAAGTCAAGACTTTCGACTCCGTTCG
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protein sequence of jgi.p|Nanoce1779_2|70404

>mRNA_5550-protein ID=mRNA_5550-protein|Name=jgi.p|Nanoce1779_2|70404|organism=Nannochloropsis oceanica|type=polypeptide|length=98bp
MGQNAMDCAAQGWSLMVVMVSVAWHIVGSRKNGACMVLGREYPPARLFAR
QRHPAPGTNPLISLPVTPGVFPPPLELCPASRAGKKEMVRFIKSVAI*
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mRNA from alignment at scaffold_13:705827..706324+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5550 ID=mRNA_5550|Name=jgi.p|Nanoce1779_2|70404|organism=Nannochloropsis oceanica|type=mRNA|length=498bp|location=Sequence derived from alignment at scaffold_13:705827..706324+ (Nannochloropsis oceanica)
ACGCGTTCCTACGTGTGTAGTGTAGGTAGGTAGGCGGGTGCGGAGGGCGA
GGGTTAGGACGGCGGCATTCATGACATTCTTCAAGCAGACGAAACAAAAG
GCATGGGACAAAATGCAATGGACTGTGCTGCTCAGGGCTGGTCGCTGATG
GTTGTGATGGTGAGCGTGGCGTGGCATATTGTGGGCAGTCGGAAAAATGG
TGCATGCATGGTGCTTGGGCGTGAGTATCCGCCCGCGCGTTTGTTTGCAC
GCCAGAGGCATCCGGCGCCAGGCACCAATCCATTGATCAGCCTCCCAGTC
ACTCCTGGGGTGTTCCCCCCCCCCCTTGAGTTGTGTCCAGCAAGCAGAGC
AGGGAAGAAAGAGATGGTACGGTTCATCAAATCCGTTGCCATTTGAAAAG
AGCTCACGCTGCGGGAGGGTCGGAGGGAGACCACAATAATCGTAACCGCA
TCATCAAATCACTTCCCACAACAAAGTCAAGACTTTCGACTCCGTTCG
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Coding sequence (CDS) from alignment at scaffold_13:705827..706324+

>mRNA_5550 ID=mRNA_5550|Name=jgi.p|Nanoce1779_2|70404|organism=Nannochloropsis oceanica|type=CDS|length=294bp|location=Sequence derived from alignment at scaffold_13:705827..706324+ (Nannochloropsis oceanica)
ATGGGACAAAATGCAATGGACTGTGCTGCTCAGGGCTGGTCGCTGATGGT
TGTGATGGTGAGCGTGGCGTGGCATATTGTGGGCAGTCGGAAAAATGGTG
CATGCATGGTGCTTGGGCGTGAGTATCCGCCCGCGCGTTTGTTTGCACGC
CAGAGGCATCCGGCGCCAGGCACCAATCCATTGATCAGCCTCCCAGTCAC
TCCTGGGGTGTTCCCCCCCCCCCTTGAGTTGTGTCCAGCAAGCAGAGCAG
GGAAGAAAGAGATGGTACGGTTCATCAAATCCGTTGCCATTTGA
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Synonyms
Publications